Package: Rsubread
Version: 2.25.1
Date: 2025-12-18
Title: Mapping, quantification and variant analysis of sequencing data
Author: Wei Shi, Yang Liao and Gordon K Smyth with contributions from
        Jenny Dai
Maintainer: Wei Shi <wei.shi2@monash.edu>, Yang Liao
 <yang.liao@monash.edu> and Gordon K Smyth <smyth@wehi.edu.au>
Description: Alignment, quantification and analysis of RNA sequencing
        data (including both bulk RNA-seq and scRNA-seq) and DNA
        sequenicng data (including ATAC-seq, ChIP-seq, WGS, WES etc).
        Includes functionality for read mapping, read counting, SNP
        calling, structural variant detection and gene fusion
        discovery. Can be applied to all major sequencing techologies
        and to both short and long sequence reads.
URL: http://bioconductor.org/packages/Rsubread
License: GPL (>=3)
Imports: grDevices, stats, utils, Matrix
biocViews: Sequencing, Alignment, SequenceMatching, RNASeq, ChIPSeq,
        SingleCell, GeneExpression, GeneRegulation, Genetics,
        ImmunoOncology, SNP, GeneticVariability, Preprocessing,
        QualityControl, GenomeAnnotation, GeneFusionDetection,
        IndelDetection, VariantAnnotation, VariantDetection,
        MultipleSequenceAlignment
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-02-04 04:59:32 UTC
RemoteUrl: https://github.com/bioc/Rsubread
RemoteRef: HEAD
RemoteSha: dc26ab0b85ebf2b01670c9eaf5e5fec8b7e09c09
NeedsCompilation: yes
Packaged: 2026-02-05 04:23:58 UTC; root
Built: R 4.6.0; x86_64-w64-mingw32; 2026-02-05 04:26:02 UTC; windows
Archs: x64
