# Maximum Likelihood Decay Modeling of RNA Degradation Data

## Documentation for package ‘RNAdecay’ version 1.31.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

a_high | calculates bounds for modeled parameters
a_low | calculates bounds for modeled parameters
b_low | calculates bounds for modeled parameters
cols | Indexes column names of a data.frame matching multiple patterns (i.e., multigrep)
const_decay | exponential decay functions
decaying_decay | exponential decay functions
decay_data | Normalized RNA abundance RNA decay timecourse
decay_plot | decay_plot() function
groupings | Combinatorial groups matrix generator
group_map | model color map
hl_plot | hl_plot() function
models | Example double exponential decay modeling results
mod_optimization | model optimization for fitting exponential decay models to normalized data
plain_theme | a custom ggplot2 theme
results | Example double exponential decay modeling results
RPMs | RNA abundance reads per million over RNA decay timecourse