# Generated by roxygen2: do not edit by hand

export(ORA_hypergeometric)
export(cluster_dynamics)
export(compare_dynamics)
export(compare_metabolites)
export(diagnostics_dynamics)
export(estimates_dynamics)
export(fit_dynamics_model)
export(get_ORA_annotations)
export(heatmap_dynamics)
export(heatmap_metabolites)
export(plot_ORA)
export(plot_PPC)
export(plot_cluster)
export(plot_diagnostics)
export(plot_estimates)
import(Rcpp)
import(SummarizedExperiment)
import(dplyr)
import(ggplot2)
import(methods)
import(patchwork)
import(stringr)
import(tidyr)
importFrom(KEGGREST,
  keggGet,
  keggList
)
importFrom(RcppParallel,RcppParallelLibs)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,rowData)
importFrom(ape,
  as.phylo,
  is.rooted,
  prop.clades
)
importFrom(dynamicTreeCut,cutreeDynamic)
importFrom(rlang,as_name)
importFrom(rstan,
  sampling,
  summary
)
importFrom(rstantools,rstan_config)
importFrom(stats,
  as.dist,
  dist,
  hclust,
  median,
  na.omit,
  quantile,
  rhyper,
  runif,
  setNames
)
importFrom(utils,combn)
useDynLib(MetaboDynamics)
