Package: MGnifyR
Type: Package
Version: 1.7.1
Authors@R: 
    c(person(given = "Tuomas", family = "Borman", role = c("aut", "cre"),
             email = "tuomas.v.borman@utu.fi",
             comment = c(ORCID = "0000-0002-8563-8884")),
      person(given = "Ben", family = "Allen", role = c("aut"),
             email = "ben.allen@ncl.ac.uk"),
      person(given = "Leo", family = "Lahti", role = c("aut"),
             email = "leo.lahti@iki.fi",
             comment = c(ORCID = "0000-0001-5537-637X")))
Title: R interface to EBI MGnify metagenomics resource
Description: Utility package to facilitate integration and analysis of
        EBI MGnify data in R. The package can be used to import
        microbial data for instance into TreeSummarizedExperiment
        (TreeSE). In TreeSE format, the data is directly compatible
        with miaverse framework.
biocViews: Infrastructure, DataImport, Metagenomics, Microbiome,
        MicrobiomeData
License: Artistic-2.0 | file LICENSE
Encoding: UTF-8
Depends: R(>= 4.4.0), MultiAssayExperiment, TreeSummarizedExperiment,
        SummarizedExperiment, BiocGenerics
Imports: mia, ape, dplyr, httr, methods, plyr, reshape2, S4Vectors,
        urltools, utils
Suggests: biomformat, broom, ggplot2, knitr, rmarkdown, testthat, xml2,
        BiocStyle, miaViz, vegan, scater, phyloseq, magick
URL: https://github.com/EBI-Metagenomics/MGnifyR
BugReports: https://github.com/EBI-Metagenomics/MGnifyR/issues
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Collate: 'utils.R' 'MgnifyClient.R' 'AllGenerics.R' 'AllClasses.R'
        'AllAccessors.R' 'MGnifyR.R' 'deprecate.R' 'doQuery.R'
        'getData.R' 'getFile.R' 'getMetadata.R' 'getResult.R'
        'searchAnalysis.R'
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev make libgsl0-dev libharfbuzz-dev
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libwebp-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-01-09 08:37:59 UTC
RemoteUrl: https://github.com/bioc/MGnifyR
RemoteRef: HEAD
RemoteSha: 39804f5f3704628772abaf0822c0046cd7b47ae9
NeedsCompilation: no
Packaged: 2026-02-09 04:41:06 UTC; root
Author: Tuomas Borman [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8563-8884>),
  Ben Allen [aut],
  Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>)
Maintainer: Tuomas Borman <tuomas.v.borman@utu.fi>
Built: R 4.6.0; ; 2026-02-09 04:43:29 UTC; windows
