Package: HoloFoodR
Type: Package
Version: 1.7.0
Authors@R: 
    c(
    person(
        given = "Tuomas", family = "Borman", role = c("aut", "cre"),
        email = "tuomas.v.borman@utu.fi",
        comment = c(ORCID = "0000-0002-8563-8884")
        ),
    person(
        given = "Artur", family = "Sannikov", role = c("aut"),
        email = "arsann@utu.fi",
        comment = c(ORCID = "0000-0001-7765-123X")
        ),
    person(
        given = "Leo", family = "Lahti", role = c("aut"),
        email = "leo.lahti@iki.fi",
        comment = c(ORCID = "0000-0001-5537-637X")
        )
    )
Title: R interface to EBI HoloFood resource
Description: Utility package to facilitate integration and analysis of
        EBI HoloFood data in R. This package streamlines access to the
        resource, allowing for direct loading of data into formats
        optimized for downstream analytics.
biocViews: Software, Infrastructure, DataImport, Microbiome,
        MicrobiomeData
License: Artistic-2.0 | file LICENSE
Encoding: UTF-8
Depends: R(>= 4.4.0), MultiAssayExperiment, TreeSummarizedExperiment
Imports: dplyr, httr2, jsonlite, S4Vectors, stringi, stats,
        SummarizedExperiment, utils
Suggests: BiocStyle, DT, ggh4x, ggsignif, knitr, MGnifyR, mia, miaViz,
        MOFA2, patchwork, reticulate, rmarkdown, scater, shadowtext,
        testthat, UpSetR
URL: https://github.com/EBI-Metagenomics/HoloFoodR
BugReports: https://github.com/EBI-Metagenomics/HoloFoodR/issues
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 13:03:20 UTC
RemoteUrl: https://github.com/bioc/HoloFoodR
RemoteRef: HEAD
RemoteSha: 8cd3d4c75bf35ff7e00f77db1bdf77273899fd72
NeedsCompilation: no
Packaged: 2026-05-30 08:02:00 UTC; root
Author: Tuomas Borman [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8563-8884>),
  Artur Sannikov [aut] (ORCID: <https://orcid.org/0000-0001-7765-123X>),
  Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>)
Maintainer: Tuomas Borman <tuomas.v.borman@utu.fi>
Built: R 4.6.0; ; 2026-05-30 08:05:39 UTC; windows
