Package: GeDi
Title: Defining and visualizing the distances between different
        genesets
Version: 1.7.1
Date: 2025-11-26
Authors@R: 
    c(
        person(
            given = "Annekathrin", family = "Nedwed", role = c("aut", "cre"),
            email = "anneludt@uni-mainz.de", comment = c(ORCID = "0000-0002-2475-4945")),
        person(
            given = "Federico", family = "Marini", role = c("aut"), 
            email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
        )
    )
Description: The package provides different distances measurements to
        calculate the difference between genesets. Based on these
        scores the genesets are clustered and visualized as graph. This
        is all presented in an interactive Shiny application for easy
        usage.
Depends: R (>= 4.4.0)
Imports: Matrix, shiny, shinyWidgets, bs4Dash, rintrojs, utils, DT,
        dplyr, shinyBS, STRINGdb, igraph, visNetwork, shinycssloaders,
        fontawesome, grDevices, parallel, stats, ggplot2, plotly, expm,
        RColorBrewer, scales, readxl, ggdendro, ComplexHeatmap,
        BiocNeighbors, tm, wordcloud2, tools, BiocParallel,
        BiocFileCache, cluster, methods, circlize, proxyC, simona
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), DESeq2, mosdef,
        GeneTonic, htmltools, AnnotationDbi, macrophage, topGO,
        biomaRt, ReactomePA, clusterProfiler, BiocStyle, org.Hs.eg.db
License: MIT + file LICENSE
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/AnnekathrinSilvia/GeDi
BugReports: https://github.com/AnnekathrinSilvia/GeDi/issues
RoxygenNote: 7.3.3
Roxygen: list(markdown = TRUE)
Config/testthat/edition: 3
biocViews: GUI, GeneSetEnrichment, Software, Transcription, RNASeq,
        Visualization, Clustering, Pathways, ReportWriting, GO, KEGG,
        Reactome, ShinyApps
Config/pak/sysreqs: libglpk-dev make libicu-dev libpng-dev libxml2-dev
        libssl-dev perl zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-11-26 15:21:02 UTC
RemoteUrl: https://github.com/bioc/GeDi
RemoteRef: HEAD
RemoteSha: 896db8613ac6e84dc95131e80820ae8ab11d84e1
NeedsCompilation: no
Packaged: 2026-01-26 08:40:51 UTC; root
Author: Annekathrin Nedwed [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2475-4945>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Annekathrin Nedwed <anneludt@uni-mainz.de>
Built: R 4.6.0; ; 2026-01-26 08:45:23 UTC; windows
