# Generated by roxygen2: do not edit by hand

export(ALK_sequence)
export(EML4_ALK_analysis)
export(EML4_ALK_detection)
export(EML4_sequence)
export(break_position)
export(break_position_depth)
export(find_variants)
export(introns_ALK_EML4)
importFrom(BiocBaseUtils,isScalarCharacter)
importFrom(BiocBaseUtils,isScalarNumber)
importFrom(BiocGenerics,append)
importFrom(GenomicAlignments,cigar)
importFrom(GenomicAlignments,readGAlignments)
importFrom(GenomicAlignments,seqnames)
importFrom(GenomicAlignments,start)
importFrom(GenomicFeatures,intronsByTranscript)
importFrom(GenomicFeatures,transcriptsBy)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,mcols)
importFrom(IRanges,IRanges)
importFrom(IRanges,findOverlaps)
importFrom(Rsamtools,ScanBamParam)
importFrom(Rsamtools,scanBam)
importFrom(S4Vectors,isEmpty)
importFrom(S4Vectors,subjectHits)
importFrom(TxDb.Hsapiens.UCSC.hg38.knownGene,TxDb.Hsapiens.UCSC.hg38.knownGene)
