Supervised Non-negative Matrix Factorization for Dimensional Reduction in Single-Cell Analysis

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Documentation for package ‘CellMentor’ version 0.99.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

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CellMentor-package	CellMentor: Cell-Type Aware Dimensionality Reduction for Single-Cell RNA-Seq
CellMentor	CellMentor: Cell-Type Aware Dimensionality Reduction for Single-Cell RNA-Seq
cm_annotation	Access cell annotations from a CellMentor object
cm_rank	Access the rank of a CellMentor object
CreateCSFNMFobject	Create CSFNMF Object for Cell Type Analysis
data_matrix	Access the query (data) matrix from a RefDataList object
H	Access the H matrix
h.baron_dataset	Load Baron Human Pancreas Dataset
matrices	Access the RefDataList from a CSFNMF object
muraro_dataset	Load Muraro Pancreas Dataset
obj_toy	Tiny prebuilt CSFNMF object for accessors (optional)
project_data	Project Data onto NMF Basis Matrix
qry_matrix_toy	Tiny toy matrices and labels for runnable examples
ref_celltype_toy	Tiny toy matrices and labels for runnable examples
ref_matrix	Access the reference matrix from a RefDataList object
ref_matrix_toy	Tiny toy matrices and labels for runnable examples
W	Access the W matrix