Package: CCAFE
Type: Package
Title: Case Control Allele Frequency Estimation
Version: 1.3.0
Authors@R: c(person("Hayley", "Wolff", email = "hayley.wolff@cuanschutz.edu", role = c("cre", "aut")))
Description: Functions to reconstruct case and control AFs from summary
        statistics. One function uses OR, NCase, NControl, and
        SE(log(OR)). The second function uses OR, NCase, NControl, and
        AF for the whole sample.
License: GPL-3
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
Imports: dplyr, VariantAnnotation
Depends: R (>= 4.4.0)
Suggests: testthat (>= 3.0.0), rmarkdown, markdown, knitr, tidyverse,
        DescTools, cowplot, BiocStyle, GenomicRanges,
        SummarizedExperiment, S4Vectors, IRanges
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://github.com/wolffha/CCAFE/
BugReports: https://github.com/wolffha/CCAFE/issues
biocViews: GenomeWideAssociation, ComparativeGenomics, Genetics,
        Preprocessing, SNP, Software, WholeGenome
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:35:24 UTC
RemoteUrl: https://github.com/bioc/CCAFE
RemoteRef: HEAD
RemoteSha: 2736f800563da42629e546c91848a4381aa5188e
NeedsCompilation: no
Packaged: 2026-02-08 09:07:16 UTC; root
Author: Hayley Wolff [cre, aut]
Maintainer: Hayley Wolff <hayley.wolff@cuanschutz.edu>
Built: R 4.6.0; ; 2026-02-08 09:09:15 UTC; windows
