BatchVaria-requirements
                        Requirements BatchVaria places on a
                        SummarizedExperiment
assayVariance           Total variance of each assay
availableCorrectionMethods
                        Available correction methods
availableVarianceMethods
                        Available variance profiling methods
basisProjection         Sample coordinates on a reference assay's
                        principal axes
basisRetention          Variance retained on a reference assay's
                        principal axes
compareCorrelations     Compare sample correlation structure across
                        assays
comparePCA              Compare PCA variance structure across assays
evaluateCorrections     Evaluate batch correction performance across
                        assays
exampleBatchVaria       Example BatchVaria dataset with batch and
                        biological effects
newVarianceSummary      Build a conforming variance summary
plotBasisProjection     Plot samples projected onto a reference assay's
                        basis
plotBatchEntropy        Plot batch mixing entropy
plotCorrelationChange   Plot correlation preservation after correction
plotPCATrajectory       Plot PCA correction trajectories
plotSampleDistance      Plot sample distance heatmap
plotVarianceComposition
                        Plot variance composition across model terms
plotVarianceDelta       Plot variance change relative to baseline
plotVarianceRadar       Radar plot of variance redistribution
profileVariance         Profile sources of variance in expression data
provenance              Report the analysis history recorded on an
                        object
recordVariance          Record variance decomposition results
registerCorrectionMethod
                        Register a batch correction method
registerVarianceEngine
                        Register a variance profiling engine
runCorrection           Apply batch correction to expression data
unregisterCorrectionMethod
                        Remove a registered batch correction method
unregisterVarianceEngine
                        Remove a registered variance profiling engine
varianceChange          Summarise variance change vs raw for a model
                        term
varianceDelta           Compute variance redistribution relative to
                        baseline
varianceHistory         Access variance profiling history
varianceResults         Retrieve variance decomposition results
varianceTable           Create variance summary tables
