Package: packFinder
Type: Package
Title: de novo Annotation of Pack-TYPE Transposable Elements
Version: 1.23.0
Authors@R: c(
    person(given = "Jack", 
           family = "Gisby", 
           role = c("aut", "cre"), 
           email = "jackgisby@gmail.com",
           comment = c(ORCID = "0000-0003-0511-8123")), 
    person(given = "Marco", 
           family = "Catoni", 
           role = "aut", 
           email="m.catoni@bham.ac.uk",
           comment = c(ORCID = "0000-0002-3258-2522"))
    )
Description: Algorithm and tools for in silico pack-TYPE transposon
        discovery. Filters a given genome for properties unique to DNA
        transposons and provides tools for the investigation of
        returned matches. Sequences are input in DNAString format, and
        ranges are returned as a dataframe (in the format returned by
        as.dataframe(GRanges)).
License: GPL-2
Encoding: UTF-8
Depends: R (>= 4.1.0)
Imports: Biostrings, GenomicRanges, kmer, ape, methods, IRanges,
        S4Vectors
Suggests: biomartr, knitr, rmarkdown, testthat, dendextend, biocViews,
        BiocCheck, BiocStyle
RoxygenNote: 7.2.0
VignetteBuilder: knitr
URL: https://github.com/jackgisby/packFinder
BugReports: https://github.com/jackgisby/packFinder/issues
biocViews: Genetics, SequenceMatching, Annotation
Config/pak/sysreqs: libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:56:19 UTC
RemoteUrl: https://github.com/bioc/packFinder
RemoteRef: HEAD
RemoteSha: a517955dbab658fc97367c786e84b53704fb0b8d
NeedsCompilation: no
Packaged: 2026-03-04 07:28:18 UTC; root
Author: Jack Gisby [aut, cre] (ORCID: <https://orcid.org/0000-0003-0511-8123>),
  Marco Catoni [aut] (ORCID: <https://orcid.org/0000-0002-3258-2522>)
Maintainer: Jack Gisby <jackgisby@gmail.com>
Built: R 4.6.0; ; 2026-03-04 07:29:45 UTC; unix
