Plot conserved gene pattern across multiple species

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Documentation for package ‘geneClusterPattern’ version 0.99.2

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

geneClusterPattern-package	Plot conserved gene pattern cross multiple species
fromOrthogroups	Read Orthologues results as a list This function is under-development.
geneClusterPattern	Plot conserved gene pattern cross multiple species
geneOrderScore	Calculate the gene order score
getGeneCluster	calculate the gene cluster
getGeneRank	Get the gene position orders
getHomologGeneList	Get the gene positions for homologs
getHomologListForOrthoFinder	Get the gene position orders for output of OrthoFinder
grangesFromEnsemblIDs	create a GRanges object by given ensembl gene ids
guessSpecies	Guess the species
homologsFromEnsemblIDs	retrieve a homologs by given ensembl gene ids
orthologPairsFromOrthoFinder	Read orthoFinder Orthologues results as a list Read orthoFinder Orthologues results as a list for each pair of orthologs.
plotGeneClusterPatterns	plot gene patters for given ids
pruningSequences	Drop non-standard chromosomes Remove the unwanted chromosomes from a list of GRanges object.