fromOrthogroups         Read Orthologues results as a list This
                        function is under-development.
geneClusterPattern-package
                        Plot conserved gene pattern cross multiple
                        species
geneOrderScore          Calculate the gene order score
getGeneCluster          calculate the gene cluster
getGeneRank             Get the gene position orders
getHomologGeneList      Get the gene positions for homologs
getHomologListForOrthoFinder
                        Get the gene position orders for output of
                        OrthoFinder
grangesFromEnsemblIDs   create a GRanges object by given ensembl gene
                        ids
guessSpecies            Guess the species
homologsFromEnsemblIDs
                        retrieve a homologs by given ensembl gene ids
orthologPairsFromOrthoFinder
                        Read orthoFinder Orthologues results as a list
                        Read orthoFinder Orthologues results as a list
                        for each pair of orthologs.
plotGeneClusterPatterns
                        plot gene patters for given ids
pruningSequences        Drop non-standard chromosomes Remove the
                        unwanted chromosomes from a list of GRanges
                        object.
