REDseq-package          REDseq
assignSeq2REsite        Assign mapped sequence tags to corresponding
                        restriction enzyme (RE) cut sites
binom.test.REDseq       Binomial test for REDseq dataset
buildREmap              Build a genome wide cut site map for a
                        Restriction Enzyme (RE)
compareREDseq           Compare two RED Sequencing Dataset
distanceHistSeq2RE      Plot the distance distribution from sequence to
                        the associated RE sites
example.REDseq          an example sequencing dataset from a
                        restoration enzyme digestion (RED) experiment
example.assignedREDseq
                        an example assigned REDseq dataset
example.map             an example REmap dataset
plotCutDistribution     plot cut frequencies of RE sites along a given
                        chromosome
summarizeByRE           Output count/weight summary by restriction
                        enzyme cut site ID (REid)
summarizeBySeq          Output count/weight summary by sequences
