R: Analysis of high-throughput sequencing data processed by restriction enzyme digestion

# Analysis of high-throughput sequencing data processed by restriction enzyme digestion

## Documentation for package ‘REDseq’ version 1.59.0

- DESCRIPTION file
- User guides, package vignettes and other documentation

## Help Pages

REDseq-package | REDseq
assignSeq2REsite | Assign mapped sequence tags to corresponding restriction enzyme (RE) cut sites
binom.test.REDseq | Binomial test for REDseq dataset
buildREmap | Build a genome wide cut site map for a Restriction Enzyme (RE)
compareREDseq | Compare two RED Sequencing Dataset
distanceHistSeq2RE | Plot the distance distribution from sequence to the associated RE sites
example.assignedREDseq | an example assigned REDseq dataset
example.map | an example REmap dataset
example.REDseq | an example sequencing dataset from a restoration enzyme digestion (RED) experiment
plotCutDistribution | plot cut frequencies of RE sites along a given chromosome
REDseq | REDseq
summarizeByRE | Output count/weight summary by restriction enzyme cut site ID (REid)
summarizeBySeq | Output count/weight summary by sequences