GDCM: CreateRAWStorage.py

GDCM 3.2.11

CreateRAWStorage.py
"""
<uid value="1.2.840.10008.5.1.4.1.1.66" name="Raw Data Storage" type="SOP Class" part="PS 3.4" retired="false"/>
"""
import gdcm
import sys,os
if __name__ == "__main__":
r = gdcm.Reader()
# Will require Testing...
dataroot = gdcm.Testing.GetDataRoot()
filename = os.path.join( dataroot, '012345.002.050.dcm' )
r.SetFileName( filename )
r.Read()
f = r.GetFile()
ds = f.GetDataSet()
uid = "1.2.840.10008.5.1.4.1.1.66"
# f = gdcm.File()
# ds = f.GetDataSet()
de = gdcm.DataElement( gdcm.Tag(0x0008,0x0016) )
de.SetByteStringValue( uid )
vr = gdcm.VR( gdcm.VR.UI )
de.SetVR( vr )
ds.Replace( de )
ano = gdcm.Anonymizer()
ano.SetFile( r.GetFile() )
ano.RemovePrivateTags()
ano.RemoveGroupLength()
taglist = [
gdcm.Tag(0x0008,0x0008),
gdcm.Tag(0x0008,0x0022),
gdcm.Tag(0x0008,0x0032),
gdcm.Tag(0x0008,0x2111),
gdcm.Tag(0x0008,0x1150),
gdcm.Tag(0x0008,0x1155),
gdcm.Tag(0x0008,0x0100),
gdcm.Tag(0x0008,0x0102),
gdcm.Tag(0x0008,0x0104),
gdcm.Tag(0x0040,0xa170),
gdcm.Tag(0x0008,0x2112),
gdcm.Tag(0x0008,0x0100),
gdcm.Tag(0x0008,0x0102),
gdcm.Tag(0x0008,0x0104),
gdcm.Tag(0x0008,0x9215),
gdcm.Tag(0x0018,0x0010),
gdcm.Tag(0x0018,0x0022),
gdcm.Tag(0x0018,0x0050),
gdcm.Tag(0x0018,0x0060),
gdcm.Tag(0x0018,0x0088),
gdcm.Tag(0x0018,0x0090),
gdcm.Tag(0x0018,0x1040),
gdcm.Tag(0x0018,0x1100),
gdcm.Tag(0x0018,0x1110),
gdcm.Tag(0x0018,0x1111),
gdcm.Tag(0x0018,0x1120),
gdcm.Tag(0x0018,0x1130),
gdcm.Tag(0x0018,0x1150),
gdcm.Tag(0x0018,0x1151),
gdcm.Tag(0x0018,0x1152),
gdcm.Tag(0x0018,0x1160),
gdcm.Tag(0x0018,0x1190),
gdcm.Tag(0x0018,0x1210),
gdcm.Tag(0x0020,0x0012),
gdcm.Tag(0x0020,0x0032),
gdcm.Tag(0x0020,0x0037),
gdcm.Tag(0x0020,0x1041),
gdcm.Tag(0x0020,0x4000),
gdcm.Tag(0x0028,0x0002),
gdcm.Tag(0x0028,0x0004),
gdcm.Tag(0x0028,0x0010),
gdcm.Tag(0x0028,0x0011),
gdcm.Tag(0x0028,0x0030),
gdcm.Tag(0x0028,0x0100),
gdcm.Tag(0x0028,0x0101),
gdcm.Tag(0x0028,0x0102),
gdcm.Tag(0x0028,0x0103),
gdcm.Tag(0x0028,0x1052),
gdcm.Tag(0x0028,0x1053),
gdcm.Tag(0x0028,0x2110),
gdcm.Tag(0x0028,0x2112),
gdcm.Tag(0x7fe0,0x0010),
gdcm.Tag(0x0018,0x0020),
gdcm.Tag(0x0018,0x0021),
gdcm.Tag(0x0018,0x0023),
gdcm.Tag(0x0018,0x0025),
gdcm.Tag(0x0018,0x0080),
gdcm.Tag(0x0018,0x0081),
gdcm.Tag(0x0018,0x0083),
gdcm.Tag(0x0018,0x0084),
gdcm.Tag(0x0018,0x0085),
gdcm.Tag(0x0018,0x0086),
gdcm.Tag(0x0018,0x0087),
gdcm.Tag(0x0018,0x0091),
gdcm.Tag(0x0018,0x0093),
gdcm.Tag(0x0018,0x0094),
gdcm.Tag(0x0018,0x0095),
gdcm.Tag(0x0018,0x1088),
gdcm.Tag(0x0018,0x1090),
gdcm.Tag(0x0018,0x1094),
gdcm.Tag(0x0018,0x1250),
gdcm.Tag(0x0018,0x1251),
gdcm.Tag(0x0018,0x1310),
gdcm.Tag(0x0018,0x1312),
gdcm.Tag(0x0018,0x1314),
gdcm.Tag(0x0018,0x1315),
gdcm.Tag(0x0018,0x1316),
gdcm.Tag(0x0020,0x0110),
gdcm.Tag(0x0028,0x0120),
gdcm.Tag(0x0028,0x1050),
gdcm.Tag(0x0028,0x1051)
]
for tag in taglist:
#print tag
ano.Remove( tag )
# special handling
gen = gdcm.UIDGenerator()
ano.Replace( gdcm.Tag(0x0008,0x9123), gen.Generate() )
#ano.Empty( gdcm.Tag(0x0040,0x0555) )
#
# uid = gen.Generate()
# de.SetTag( gdcm.Tag(0x0008,0x0018) )
# de.SetByteStringValue( uid )
# ds.Insert( de )
# init FMI now:
#fmi = f.GetHeader()
#ts = gdcm.TransferSyntax()
#print ts
#fmi.SetDataSetTransferSyntax( ts ) # default
#print fmi.GetDataSetTransferSyntax()
#de.SetTag( gdcm.Tag(0x0002,0x0010) )
#uid = "1.2.840.10008.1.2"
#de.SetByteStringValue( uid )
#fmi.Insert( de )
# f.SetHeader( r.GetFile().GetHeader() )
writer = gdcm.Writer()
writer.SetFile( ano.GetFile() )
writer.SetFileName( "rawstorage.dcm" );
writer.Write()
gdcm::Anonymizer
Anonymizer.
Definition gdcmAnonymizer.h:78
gdcm::DataElement
Class to represent a Data Element either Implicit or Explicit.
Definition gdcmDataElement.h:59
gdcm::Reader
Reader ala DOM (Document Object Model).
Definition gdcmReader.h:54
gdcm::Tag
Class to represent a DICOM Data Element (Attribute) Tag (Group, Element).
Definition gdcmTag.h:39
gdcm::Testing::GetDataRoot
static const char * GetDataRoot()
Return the GDCM DATA ROOT.
gdcm::UIDGenerator
Class for generating unique UID.
Definition gdcmUIDGenerator.h:28
gdcm::VR
VR class.
Definition gdcmVR.h:55
gdcm::Writer
Writer ala DOM (Document Object Model).
Definition gdcmWriter.h:49