GOSemSim-package | Gene Ontology-based Sematic Similarity Measures |
buildGOmap | buildGOmap |
clusterSim | Semantic Similarity Between Two Gene Clusters |
combineScores | combining similarity matrix to similarity score |
geneSim | Semantic Similarity Between two Genes |
GO | Information content of GO terms |
godata | godata |
GOSemSim | Gene Ontology-based Sematic Similarity Measures |
GOSemSimDATA-class | Class "GOSemSimDATA" This class stores IC and gene to go mapping for semantic similarity measurement |
goSim | Semantic Similarity Between Two GO Terms |
gotbl | Information content of GO terms |
go_term_table | Information content of GO terms |
infoContentMethod | information content based methods |
load_OrgDb | load_OrgDb |
mclusterSim | Pairwise Semantic Similarities for a List of Gene Clusters |
mgeneSim | Pairwise Semantic Similarity for a List of Genes |
mgoSim | Semantic Similarity Between two GO terms lists |
parse_gff | read.gaf |
read.blast2go | read.blast2go |
read.gaf | read.gaf |
show-method | Class "GOSemSimDATA" This class stores IC and gene to go mapping for semantic similarity measurement |
tcss_cutoff | determine the topological cutoff for TCSS method |
termSim | termSim |
wangMethod_internal | wangMethod |