ProteoWizard
cv.hpp
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1 //
2 // $Id: cv.hpp 3916 2012-08-27 17:52:21Z chambm $
3 //
4 //
5 // Darren Kessner <darren@proteowizard.org>
6 //
7 // Copyright 2007 Spielberg Family Center for Applied Proteomics
8 // Cedars-Sinai Medical Center, Los Angeles, California 90048
9 //
10 // Licensed under the Apache License, Version 2.0 (the "License");
11 // you may not use this file except in compliance with the License.
12 // You may obtain a copy of the License at
13 //
14 // http://www.apache.org/licenses/LICENSE-2.0
15 //
16 // Unless required by applicable law or agreed to in writing, software
17 // distributed under the License is distributed on an "AS IS" BASIS,
18 // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19 // See the License for the specific language governing permissions and
20 // limitations under the License.
21 //
22 // This file was generated by cvgen.
23 //
24 // Do not edit this file! Your changes will be lost next time cvgen is run -
25 // see pwiz/scripts/misc/update_cv.bat for info on how that works.
26 // Instead, edit cvgen.cpp itself, or the cv.inl include file if adding static
27 // code or data.
28 //
29 
30 
31 #ifndef _CV_HPP_
32 #define _CV_HPP_
33 
34 
35 #include <string>
36 #include <vector>
37 #include <map>
39 
40 
41 // [psi-ms.obo]
42 #define _PSI_MS_OBO_
43 // format-version: 1.2
44 // data-version: 3.30.0
45 // date: 06:08:2012 08:01
46 // saved-by: Gerhard Mayer
47 // auto-generated-by: OBO-Edit 2.2
48 // import: http://unit-ontology.googlecode.com/svn/trunk/unit.obo
49 // default-namespace: MS
50 // remark: namespace: MS
51 // remark: version: 3.30.0
52 // remark: release date: 2012-08-06
53 // remark: coverage: Mass spectrometer output files and spectra interpretation
54 // remark: creator: Matt Chambers <matt.chambers <-at-> vanderbilt.edu>
55 // remark: creator: Andreas Bertsch <bertsch <-at-> informatik.uni-tuebingen.de>
56 // remark: creator: Marius Kallhardt <Marius.Kallhardt <-at-> bdal.de>
57 // remark: creator: Eric Deutsch <edeutsch <-at-> systemsbiology.org>
58 // remark: creator: Fredrik Levander <fredrik.levander <-at-> immun.lth.se>
59 // remark: creator: Gerhard Mayer <mayerg97 <-at-> rub.de>
60 // remark: publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group
61 // remark: When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html.
62 //
63 // [unimod.obo]
64 #define _UNIMOD_OBO_
65 // format-version: 1.2
66 // date: 2012:08:03 09:20
67 //
68 // [unit.obo]
69 #define _UNIT_OBO_
70 // format-version: 1.2
71 // date: 12:10:2011 11:21
72 // saved-by: George Gkoutos
73 // auto-generated-by: OBO-Edit 2.1-beta13
74 // subsetdef: unit_group_slim "unit group slim"
75 // subsetdef: unit_slim "unit slim"
76 // default-namespace: unit.ontology
77 // namespace-id-rule: * UO:$sequence(7,0,9999999)$
78 // import: http://purl.obolibrary.org/obo/pato.obo
79 //
80 
81 
82 namespace pwiz {
83 namespace cv {
84 
85 
86 /// enumeration of controlled vocabulary (CV) terms, generated from OBO file(s)
87 enum PWIZ_API_DECL CVID
88 {
90 
91  /// Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass Spectrometry Vocabularies.
93 
94  /// sample number: A reference number relevant to the sample under study.
95  MS_sample_number = 1000001,
96 
97  /// sample name: A reference string relevant to the sample under study.
98  MS_sample_name = 1000002,
99 
100  /// sample state: The chemical phase of a pure sample, or the state of a mixed sample.
101  MS_sample_state = 1000003,
102 
103  /// sample mass: Total mass of sample used.
104  MS_sample_mass = 1000004,
105 
106  /// sample volume: Total volume of solution used.
107  MS_sample_volume = 1000005,
108 
109  /// sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used.
111 
112  /// inlet type: The nature of the sample inlet.
113  MS_inlet_type = 1000007,
114 
115  /// ionization type: The method by which gas phase ions are generated from the sample.
117 
118  /// ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer.
120 
121  /// analyzer type: The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted.
122  MS_analyzer_type = 1000010,
123 
124  /// mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height.
126 
127  /// resolution measurement method: Which of the available standard measures is used to define whether two peaks are separate.
129 
130  /// resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z.
132 
133  /// accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.
134  MS_accuracy = 1000014,
135 
136  /// scan rate: Rate in Th/sec for scanning analyzers.
137  MS_scan_rate = 1000015,
138 
139  /// scan start time: The time that an analyzer started a scan, relative to the start of the MS run.
141 
142  /// Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum.
143  MS_Scan_Function = 1000017,
144 
145  /// scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low).
146  MS_scan_direction = 1000018,
147 
148  /// scan law: Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used.
149  MS_scan_law = 1000019,
150 
151  /// scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experiment.
153 
154  /// reflectron state: Status of the reflectron, turned on or off.
156 
157  /// TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer.
159 
160  /// isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion.
162 
163  /// final MS exponent: Final MS level achieved when performing PFF with the ion trap (e.g. MS E10).
165 
166  /// magnetic field strength: A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.
168 
169  /// B (magnetic field strength): A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.
171 
172  /// detector type: Type of detector used in the mass spectrometer.
173  MS_detector_type = 1000026,
174 
175  /// detector acquisition mode: Method by which detector signal is acquired by the data system.
177 
178  /// detector resolution: The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height.
180 
181  /// sampling frequency: The rate of signal sampling (measurement) with respect to time.
183 
184  /// vendor: Name of instrument vendor.
186 
187  /// instrument model: Instrument model name not including the vendor's name.
189 
190  /// customization: Free text description of a single customization made to the instrument; for several modifications, use several entries.
191  MS_customization = 1000032,
192 
193  /// deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution.
194  MS_deisotoping = 1000033,
195 
196  /// charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions.
198 
199  /// peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data.
200  MS_peak_picking = 1000035,
201 
202  /// scan mode: OBSOLETE.
204 
205  /// polarity: Terms to describe the polarity setting of the instrument.
206  MS_polarity = 1000037,
207 
208  /// minute: Acquisition time in minutes.
210 
211  /// second: Acquisition time in seconds.
213 
214  /// m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
215  MS_m_z = 1000040,
216 
217  /// mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
219 
220  /// Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
222 
223  /// thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
225 
226  /// charge state: The charge state of the ion, single or multiple and positive or negatively charged.
227  MS_charge_state = 1000041,
228 
229  /// z (charge state): The charge state of the ion, single or multiple and positive or negatively charged.
231 
232  /// peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum.
233  MS_peak_intensity = 1000042,
234 
235  /// intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors.
236  MS_intensity_unit = 1000043,
237 
238  /// dissociation method: Fragmentation method used for dissociation or fragmentation.
240 
241  /// collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion.
243 
244  /// energy unit: Energy units are represented in either eV or Joules.
246 
247  /// emulsion: State if the sample is in emulsion form.
248  MS_emulsion = 1000047,
249 
250  /// gas: State if the sample is in gaseous form.
251  MS_gas = 1000048,
252 
253  /// liquid: State if the sample is in liquid form.
254  MS_liquid = 1000049,
255 
256  /// solid: State if the sample is in solid form.
257  MS_solid = 1000050,
258 
259  /// solution: State if the sample is in solution form.
260  MS_solution = 1000051,
261 
262  /// suspension: State if the sample is in suspension form.
263  MS_suspension = 1000052,
264 
265  /// sample batch: Sample batch lot identifier.
266  MS_sample_batch = 1000053,
267 
268  /// chromatography: Chromatographic conditions used to obtain the sample.
269  MS_chromatography = 1000054,
270 
271  /// continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.
273 
274  /// CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.
276 
277  /// direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable probe.
278  MS_direct_inlet = 1000056,
279 
280  /// electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization source.
282 
283  /// flow injection analysis: Sample is directly injected or infused into the ionization source.
285 
286  /// inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction.
288 
289  /// infusion: The continuous flow of solution of a sample into the ionization source.
290  MS_infusion = 1000060,
291 
292  /// jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity.
293  MS_jet_separator = 1000061,
294 
295  /// membrane separator: A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane.
297 
298  /// moving belt: Continuous moving surface in the form of a belt which passes through an ionsource carrying analyte molecules.
299  MS_moving_belt = 1000063,
300 
301  /// moving wire: Continuous moving surface in the form of a wire which passes through an ionsource carrying analyte molecules.
302  MS_moving_wire = 1000064,
303 
304  /// open split: A division of flowing stream of liquid into two streams.
305  MS_open_split = 1000065,
306 
307  /// particle beam: Method for generating ions from a solution of an analyte.
308  MS_particle_beam = 1000066,
309 
310  /// reservoir: A sample inlet method involving a reservoir.
311  MS_reservoir = 1000067,
312 
313  /// septum: A disc composed of a flexible material that seals the entrance to the reservoir. Can also be enterance to the vaccum chamber.
314  MS_septum = 1000068,
315 
316  /// thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample.
318 
319  /// atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.
321 
322  /// APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.
324 
325  /// chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.
327 
328  /// CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.
330 
331  /// Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
333 
334  /// EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
336 
337  /// electrospray ionization: A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.
339 
340  /// ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.
342 
343  /// fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.
345 
346  /// FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.
348 
349  /// matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.
351 
352  /// MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.
354 
355  /// negative ion mode: OBSOLETE.
357 
358  /// positive ion mode: OBSOLETE.
360 
361  /// axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer.
363 
364  /// fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.
366 
367  /// FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.
369 
370  /// magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z.
372 
373  /// quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.
374  MS_quadrupole = 1000081,
375 
376  /// quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
378 
379  /// Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
381 
382  /// QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
384 
385  /// Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
387 
388  /// radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer.
390 
391  /// time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.
392  MS_time_of_flight = 1000084,
393 
394  /// TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.
396 
397  /// baseline: An attribute of resolution when recording the detector response in absence of the analyte.
398  MS_baseline = 1000085,
399 
400  /// full width at half-maximum: A measure of resolution represented as width of the peak at half peak height.
402 
403  /// FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half peak height.
405 
406  /// ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the signal height.
408 
409  /// constant: When resolution is constant with respect to m/z.
410  MS_constant = 1000088,
411 
412  /// proportional: When resolution is proportional with respect to m/z.
413  MS_proportional = 1000089,
414 
415  /// mass scan: A variation of instrument where a selected mass is scanned.
416  MS_mass_scan = 1000090,
417 
418  /// selected ion detection: Please see Single Ion Monitoring.
420 
421  /// decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers.
423 
424  /// increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers.
426 
427  /// exponential: The mass scan is done in exponential mode.
428  MS_exponential = 1000094,
429 
430  /// linear: The mass scan is done in linear mode.
431  MS_linear = 1000095,
432 
433  /// quadratic: The mass scan is done in quadratic mode.
434  MS_quadratic = 1000096,
435 
436  /// constant neutral mass loss: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
438 
439  /// multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring.
441 
442  /// multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
444 
445  /// MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring.
447 
448  /// precursor ion scan: The specific scan function or process that will record a precursor ion spectrum.
450 
451  /// product ion scan: The specific scan function or process that records product ion spectrum.
453 
454  /// single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum.
456 
457  /// single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
459 
460  /// None ??: None.
462 
463  /// reflectron off: Reflectron is off.
464  MS_reflectron_off = 1000105,
465 
466  /// reflectron on: Reflectron is on.
467  MS_reflectron_on = 1000106,
468 
469  /// channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
470  MS_channeltron = 1000107,
471 
472  /// Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
474 
475  /// conversion dynode electron multiplier: A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected.
477 
478  /// conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier.
480 
481  /// daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
482  MS_daly_detector = 1000110,
483 
484  /// Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
486 
487  /// electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.
489 
490  /// EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.
492 
493  /// faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device.
494  MS_faraday_cup = 1000112,
495 
496  /// focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.
498 
499  /// microchannel plate detector: A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.
501 
502  /// multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.
504 
505  /// multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers.
507 
508  /// photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.
510 
511  /// PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.
513 
514  /// analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.
516 
517  /// ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.
519 
520  /// pulse counting: Definition to do.
521  MS_pulse_counting = 1000118,
522 
523  /// time-digital converter: A device for converting a signal of sporadic pluses into a digital representation of their time indices.
525 
526  /// TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital representation of their time indices.
528 
529  /// transient recorder: A detector acquisition mode used for detecting transient signals.
531 
532  /// AB SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as \"Applied Biosystems|MDS SCIEX\".
534 
535  /// Bruker Daltonics instrument model: Bruker Daltonics instrument model.
537 
538  /// IonSpec instrument model: IonSpec corporation instrument model.
540 
541  /// Shimadzu instrument model: Shimadzu corporation instrument model.
543 
544  /// Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model.
546 
547  /// Waters instrument model: Waters Corporation instrument model.
549 
550  /// centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.
552 
553  /// Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.
555 
556  /// profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
558 
559  /// continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
561 
562  /// Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
564 
565  /// negative scan: Polarity of the scan is negative.
566  MS_negative_scan = 1000129,
567 
568  /// positive scan: Polarity of the scan is positive.
569  MS_positive_scan = 1000130,
570 
571  /// number of counts: The number of counted events observed in one or a group of elements of a detector.
573 
574  /// percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity.
576 
577  /// collision-induced dissociation: The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
579 
580  /// CID (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
582 
583  /// CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
585 
586  /// collision activated dissociation (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
588 
589  /// plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
591 
592  /// PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
594 
595  /// post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.
597 
598  /// PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.
600 
601  /// surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface.
603 
604  /// SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a surface.
606 
607  /// electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J.
609 
610  /// eV (electron volt): A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J.
612 
613  /// percent collision energy: Collision energy required to fragment an ion represented as a percent value.
615 
616  /// 4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.
617  MS_4000_QTRAP = 1000139,
618 
619  /// 4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.
621 
622  /// apex IV: Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
623  MS_apex_IV = 1000141,
624 
625  /// apex Q: Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
626  MS_apex_Q = 1000142,
627 
628  /// API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.
629  MS_API_150EX = 1000143,
630 
631  /// API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.
632  MS_API_150EX_Prep = 1000144,
633 
634  /// API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.
635  MS_API_2000 = 1000145,
636 
637  /// API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.
638  MS_API_3000 = 1000146,
639 
640  /// API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.
641  MS_API_4000 = 1000147,
642 
643  /// autoflex II: Bruker Daltonics' autoflex II: MALDI TOF.
644  MS_autoflex_II = 1000148,
645 
646  /// autoflex TOF/TOF: Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF.
648 
649  /// Auto Spec Ultima NT: Waters AutoSpec Ultima NT MS.
651 
652  /// BioTOF II: Bruker Daltonics' BioTOF II: ESI TOF.
653  MS_BioTOF_II = 1000151,
654 
655  /// BioTOF-Q: Bruker Daltonics' BioTOF-Q: ESI Q-TOF.
656  MS_BioTOF_Q = 1000152,
657 
658  /// DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.
660 
661  /// DELTAplusXP: ThermoFinnigan DELTAplusXP MS.
662  MS_DELTAplusXP = 1000154,
663 
664  /// ELEMENT2: ThermoFinnigan ELEMENT2 MS.
665  MS_ELEMENT2 = 1000155,
666 
667  /// esquire 4000: Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
668  MS_esquire_4000 = 1000156,
669 
670  /// esquire 6000: Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
671  MS_esquire_6000 = 1000157,
672 
673  /// explorer: IonSpec Explorer MS.
674  MS_explorer = 1000158,
675 
676  /// GCT: Waters GCT MS.
677  MS_GCT = 1000159,
678 
679  /// HCT: Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI.
680  MS_HCT = 1000160,
681 
682  /// HCTplus: Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.
683  MS_HCTplus = 1000161,
684 
685  /// HiRes ESI: IonSpec HiResESI MS.
686  MS_HiRes_ESI = 1000162,
687 
688  /// HiRes MALDI: IonSpec HiResMALDI MS.
689  MS_HiRes_MALDI = 1000163,
690 
691  /// IsoPrime: Waters IsoPrime MS.
692  MS_IsoPrime = 1000164,
693 
694  /// IsoProbe: Waters IsoProbe MS.
695  MS_IsoProbe = 1000165,
696 
697  /// IsoProbe T: Waters IsoProbe T MS.
698  MS_IsoProbe_T = 1000166,
699 
700  /// LCQ Advantage: ThermoFinnigan LCQ Advantage MS.
701  MS_LCQ_Advantage = 1000167,
702 
703  /// LCQ Classic: ThermoFinnigan LCQ Classic MS.
704  MS_LCQ_Classic = 1000168,
705 
706  /// LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.
708 
709  /// M@LDI L: Waters MALDI L MS.
710  MS_M_LDI_L = 1000170,
711 
712  /// M@LDI LR: Waters MALDI LR MS.
713  MS_M_LDI_LR = 1000171,
714 
715  /// MAT253: ThermoFinnigan MAT253 MS.
716  MS_MAT253 = 1000172,
717 
718  /// MAT900XP: ThermoFinnigan MAT900XP MS.
719  MS_MAT900XP = 1000173,
720 
721  /// MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.
722  MS_MAT900XP_Trap = 1000174,
723 
724  /// MAT95XP: ThermoFinnigan MAT95XP MS.
725  MS_MAT95XP = 1000175,
726 
727  /// MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.
728  MS_MAT95XP_Trap = 1000176,
729 
730  /// microflex: Bruker Daltonics' microflex: MALDI TOF.
731  MS_microflex = 1000177,
732 
733  /// microTOF LC: Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI.
734  MS_microTOF_LC = 1000178,
735 
736  /// neptune: ThermoFinnigan NEPTUNE MS.
737  MS_neptune = 1000179,
738 
739  /// NG-5400: Waters NG-5400 MS.
740  MS_NG_5400 = 1000180,
741 
742  /// OMEGA: IonSpec OMEGA MS.
743  MS_OMEGA = 1000181,
744 
745  /// OMEGA-2001: IonSpec OMEGA-2001 MS.
746  MS_OMEGA_2001 = 1000182,
747 
748  /// OmniFlex: Bruker Daltonics' OmniFlex: MALDI TOF.
749  MS_OmniFlex = 1000183,
750 
751  /// Platform ICP: Waters Platform ICP MS.
752  MS_Platform_ICP = 1000184,
753 
754  /// PolarisQ: ThermoFinnigan PolarisQ MS.
755  MS_PolarisQ = 1000185,
756 
757  /// proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.
759 
760  /// Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.
761  MS_Q_TRAP = 1000187,
762 
763  /// Q-Tof micro: Waters Q-Tof micro MS.
764  MS_Q_Tof_micro = 1000188,
765 
766  /// Q-Tof ultima: Waters Q-Tof Ultima MS.
767  MS_Q_Tof_ultima = 1000189,
768 
769  /// QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.
770  MS_QSTAR = 1000190,
771 
772  /// quattro micro: Waters Quattro micro MS.
773  MS_quattro_micro = 1000191,
774 
775  /// Quattro UItima: Waters Quattro Uitima MS.
776  MS_Quattro_UItima = 1000192,
777 
778  /// Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.
779  MS_Surveyor_MSQ = 1000193,
780 
781  /// SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.
782  MS_SymBiot_I = 1000194,
783 
784  /// SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.
785  MS_SymBiot_XVI = 1000195,
786 
787  /// TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.
788  MS_TEMPUS_TOF = 1000196,
789 
790  /// TRACE DSQ: ThermoFinnigan TRACE DSQ MS.
791  MS_TRACE_DSQ = 1000197,
792 
793  /// TRITON: ThermoFinnigan TRITON MS.
794  MS_TRITON = 1000198,
795 
796  /// TSQ Quantum: ThermoFinnigan TSQ Quantum MS.
797  MS_TSQ_Quantum = 1000199,
798 
799  /// ultima: IonSpec Ultima MS.
800  MS_ultima = 1000200,
801 
802  /// ultraflex: Bruker Daltonics' ultraflex: MALDI TOF.
803  MS_ultraflex = 1000201,
804 
805  /// ultraflex TOF/TOF: Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF.
807 
808  /// Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.
809  MS_Voyager_DE_PRO = 1000203,
810 
811  /// Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.
812  MS_Voyager_DE_STR = 1000204,
813 
814  /// selected ion monitoring: The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
816 
817  /// Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
819 
820  /// SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
822 
823  /// selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.
825 
826  /// SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.
828 
829  /// accurate mass: An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition.
830  MS_accurate_mass = 1000207,
831 
832  /// average mass: The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance.
833  MS_average_mass = 1000208,
834 
835  /// appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.
837 
838  /// AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.
840 
841  /// base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.
842  MS_base_peak = 1000210,
843 
844  /// BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.
846 
847  /// OBSOLETE charge number: OBSOLETE. The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state.
849 
850  /// z (OBSOLETE charge number): OBSOLETE. The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state.
852 
853  /// dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg.
855 
856  /// Da (dalton): A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg.
858 
859  /// electron affinity: The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.
861 
862  /// EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.
864 
865  /// electron energy obsolete: The potential difference through which electrons are accelerated before they are used to bring about electron ionization.
867 
868  /// exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom.
869  MS_exact_mass = 1000215,
870 
871  /// field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields.
873 
874  /// FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic fields.
876 
877  /// ionization cross section: A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule.
879 
880  /// ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
882 
883  /// ionization energy: The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.
885 
886  /// IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.
888 
889  /// isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.
891 
892  /// IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.
894 
895  /// magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to qv B where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer.
897 
898  /// mass defect: The difference between the monoisotipic and nominal mass of a molecule or atom.
899  MS_mass_defect = 1000222,
900 
901  /// mass number: The sum of the protons and neutrons in an atom, molecule or ion.
902  MS_mass_number = 1000223,
903 
904  /// molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules).
905  MS_molecular_mass = 1000224,
906 
907  /// monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element.
909 
910  /// molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.
912 
913  /// MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.
915 
916  /// multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are absorbed.
918 
919  /// MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons are absorbed.
921 
922  /// nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms.
923  MS_nitrogen_rule = 1000228,
924 
925  /// nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value.
926  MS_nominal_mass = 1000229,
927 
928  /// odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions.
930 
931  /// peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably.
932  MS_peak = 1000231,
933 
934  /// peak intensity: The height or area of a peak in a mass spectrum.
936 
937  /// proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.
939 
940  /// PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.
942 
943  /// mass resolving power: In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported.
945 
946  /// total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.
948 
949  /// TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.
951 
952  /// transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region.
953  MS_transmission = 1000236,
954 
955  /// unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.
957 
958  /// u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.
960 
961  /// accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.
963 
964  /// AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.
966 
967  /// atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.
969 
970  /// AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.
972 
973  /// atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at atmospheric pressure.
975 
976  /// API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas phase at atmospheric pressure.
978 
979  /// Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
981 
982  /// APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
984 
985  /// blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.
987 
988  /// BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.
990 
991  /// charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.
993 
994  /// CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.
996 
997  /// consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
999 
1000  /// CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1002 
1003  /// charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.
1005 
1006  /// CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.
1008 
1009  /// delayed extraction: The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.
1011 
1012  /// DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.
1014 
1015  /// desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporization of that sample.
1017 
1018  /// DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vaporization of that sample.
1020 
1021  /// direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.
1023 
1024  /// DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.
1026 
1027  /// direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.
1029 
1030  /// DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.
1032 
1033  /// electron capture dissociation: A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.
1035 
1036  /// ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.
1038 
1039  /// even-electron ion: An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.
1041 
1042  /// EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.
1044 
1045  /// electron-induced excitation in organics: The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.
1047 
1048  /// EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.
1050 
1051  /// electron multiplier: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.
1053 
1054  /// EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.
1056 
1057  /// electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
1059 
1060  /// ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
1062 
1063  /// flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.
1065 
1066  /// FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.
1068 
1069  /// high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.
1071 
1072  /// FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.
1074 
1075  /// field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.
1077 
1078  /// FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.
1080 
1081  /// field ionization: The removal of electrons from any species by interaction with a high electric field.
1083 
1084  /// FI (field ionization): The removal of electrons from any species by interaction with a high electric field.
1086 
1087  /// glow discharge ionization: The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.
1089 
1090  /// GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.
1092 
1093  /// ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.
1095 
1096  /// IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.
1098 
1099  /// ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas under the influence of an electric field.
1101 
1102  /// IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer gas under the influence of an electric field.
1104 
1105  /// infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.
1107 
1108  /// IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.
1110 
1111  /// isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.
1113 
1114  /// IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.
1116 
1117  /// ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combination.
1118  MS_ion_trap = 1000264,
1119 
1120  /// IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in combination.
1122 
1123  /// kinetic energy release distribution: Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.
1125 
1126  /// KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.
1128 
1129  /// Laser Desorption: The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1131 
1132  /// Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1134 
1135  /// LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1137 
1138  /// mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.
1140 
1141  /// MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.
1143 
1144  /// mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.
1146 
1147  /// MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.
1149 
1150  /// mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.
1152 
1153  /// MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.
1155 
1156  /// multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.
1158 
1159  /// MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.
1161 
1162  /// Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions.
1164 
1165  /// NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negative ions.
1167 
1168  /// neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.
1170 
1171  /// NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.
1173 
1174  /// photoionization: The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
1176 
1177  /// PI (photoionization): The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
1179 
1180  /// pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.
1182 
1183  /// PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.
1185 
1186  /// collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.
1188 
1189  /// q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.
1191 
1192  /// resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.
1194 
1195  /// REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.
1197 
1198  /// residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.
1200 
1201  /// RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.
1203 
1204  /// surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.
1206 
1207  /// SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.
1209 
1210  /// surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.
1212 
1213  /// SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.
1215 
1216  /// suface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1218 
1219  /// SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1221 
1222  /// selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.
1224 
1225  /// SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.
1227 
1228  /// sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.
1230 
1231  /// SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.
1233 
1234  /// Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.
1236 
1237  /// SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.
1239 
1240  /// stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS/MS experiments.
1242 
1243  /// SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS/MS experiments.
1245 
1246  /// total ion current: The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.
1248 
1249  /// TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.
1251 
1252  /// time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.
1254 
1255  /// TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.
1257 
1258  /// time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.
1260 
1261  /// TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.
1263 
1264  /// cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged particles.
1265  MS_cyclotron = 1000288,
1266 
1267  /// double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam.
1269 
1270  /// hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry.
1272 
1273  /// linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap.
1275 
1276  /// mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate.
1278 
1279  /// mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of ions.
1281 
1282  /// mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z).
1283  MS_mass_spectrum = 1000294,
1284 
1285  /// mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians.
1287 
1288  /// nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians.
1290 
1291  /// paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected.
1293 
1294  /// prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path.
1296 
1297  /// quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term.
1298  MS_quistor = 1000299,
1299 
1300  /// reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time.
1301  MS_reflectron = 1000300,
1302 
1303  /// sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection.
1305 
1306  /// tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry.
1308 
1309  /// transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.
1311 
1312  /// accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.
1314 
1315  /// cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB.
1317 
1318  /// dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fields that vary with time.
1320 
1321  /// einzel lens: Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle.
1322  MS_einzel_lens = 1000307,
1323 
1324  /// electric field strength: The magnitude of the force per unit charge at a given point in space.
1326 
1327  /// first stability region: The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole.
1329 
1330  /// fringing field: The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element.
1332 
1333  /// kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field.
1335 
1336  /// mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.
1337  MS_mass_limit = 1000312,
1338 
1339  /// scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions.
1341 
1342  /// mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z values from an ion trap.
1344 
1345  /// mass selective instability: A method for selective ejection of ions according to their m/z value in an ion trap.
1347 
1348  /// mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer.
1350 
1351  /// orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage.
1353 
1354  /// resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it.
1356 
1357  /// space charge effect: The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time.
1359 
1360  /// static field: An electric or magnetic field that does not change in time.
1361  MS_static_field = 1000320,
1362 
1363  /// 2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained.
1365 
1366  /// charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z.
1368 
1369  /// constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement.
1371 
1372  /// constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment.
1374 
1375  /// Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that undergo a selected m/z increment.
1377 
1378  /// constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.
1380 
1381  /// constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.
1383 
1384  /// constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
1386 
1387  /// constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
1389 
1390  /// consecutive reaction monitoring: A type of MS/MS experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1392 
1393  /// e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions.
1395 
1396  /// linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum.
1397  MS_linked_scan = 1000329,
1398 
1399  /// linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors.
1401 
1402  /// Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors.
1404 
1405  /// Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended.
1407 
1408  /// Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan.
1410 
1411  /// MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time.
1412  MS_MS_MS_in_Time = 1000334,
1413 
1414  /// MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition.
1416 
1417  /// neutral loss: The loss of an uncharged species during a rearrangement process.
1418  MS_neutral_loss = 1000336,
1419 
1420  /// nth generation product ion: Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated.
1422 
1423  /// nth generation product ion scan: The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions.
1425 
1426  /// nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions.
1428 
1429  /// precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is not recommended.
1430  MS_precursor_ion = 1000340,
1431 
1432  /// precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z.
1434 
1435  /// product ion: An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated.
1436  MS_product_ion = 1000342,
1437 
1438  /// product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions.
1440 
1441  /// progeny ion: A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.
1442  MS_progeny_ion = 1000344,
1443 
1444  /// Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.
1446 
1447  /// array detector: Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector.
1449 
1450  /// conversion dynode: A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected.
1452 
1453  /// dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode.
1454  MS_dynode = 1000347,
1455 
1456  /// focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.
1458 
1459  /// ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier.
1461 
1462  /// point collector: A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially.
1464 
1465  /// postacceleration detector: A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector.
1467 
1468  /// secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go?
1470 
1471  /// adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules.
1472  MS_adduct_ion = 1000353,
1473 
1474  /// aromatic ion: A planar cyclic ion that obeys the Hckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure.
1475  MS_aromatic_ion = 1000354,
1476 
1477  /// analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+.
1478  MS_analog_ion = 1000355,
1479 
1480  /// anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.
1482 
1483  /// cationized molecule: An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used.
1485 
1486  /// cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-.
1487  MS_cluster_ion = 1000358,
1488 
1489  /// Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion.
1491 
1492  /// diagnostic ion: A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives.
1494 
1495  /// dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+.
1496  MS_dimeric_ion = 1000361,
1497 
1498  /// distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion.
1499  MS_distonic_ion = 1000362,
1500 
1501  /// enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions.
1502  MS_enium_ion = 1000363,
1503 
1504  /// fragment ion: A product ion that results from the dissociation of a precursor ion.
1506 
1507  /// ion?: An atomic or molecular species having a net positive or negative electric charge.
1508  MS_ion_ = 1000365,
1509 
1510  /// Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue.
1512 
1513  /// Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer.
1515 
1516  /// metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection.
1518 
1519  /// molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion.
1520  MS_molecular_ion = 1000369,
1521 
1522  /// negative ion: An atomic or molecular species having a net negative electric charge.
1523  MS_negative_ion = 1000370,
1524 
1525  /// non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions.
1527 
1528  /// onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+.
1529  MS_onium_ion = 1000372,
1530 
1531  /// principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions.
1532  MS_principal_ion = 1000373,
1533 
1534  /// positive ion: An atomic or molecular species having a net positive electric charge.
1535  MS_positive_ion = 1000374,
1536 
1537  /// protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended.
1539 
1540  /// radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation.
1541  MS_radical_ion = 1000376,
1542 
1543  /// reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion.
1544  MS_reference_ion = 1000377,
1545 
1546  /// stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer.
1547  MS_stable_ion = 1000378,
1548 
1549  /// unstable ion: An ion with sufficient enerrgy to dissociate within the ion source.
1550  MS_unstable_ion = 1000379,
1551 
1552  /// adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state.
1554 
1555  /// associative ionization: An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron.
1557 
1558  /// atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
1560 
1561  /// autodetachment: The formation of a neutral when a negative ion in a disrtete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source.
1563 
1564  /// autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source.
1566 
1567  /// charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization.
1569 
1570  /// chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization.
1572 
1573  /// desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface.
1575 
1576  /// dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion.
1578 
1579  /// electron ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
1581 
1582  /// ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules.
1584 
1585  /// ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment among the products.
1587 
1588  /// ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
1590 
1591  /// laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material.
1593 
1594  /// liquid secondary ionization: The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization.
1596 
1597  /// membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source.
1599 
1600  /// microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanaoelectrospray.
1602 
1603  /// nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.
1605 
1606  /// nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.
1608 
1609  /// penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited.
1611 
1612  /// plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
1614 
1615  /// pre-ionization state: An electronic state capable of undergoing auto-Ionization.
1617 
1618  /// secondary ionization: The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions.
1620 
1621  /// soft ionization: The formation of gas-phase ions without extensive fragmentation.
1623 
1624  /// spark ionization: The formation of ions from a solid material by an intermittent electrical discharge.
1626 
1627  /// surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization.
1629 
1630  /// surface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1632 
1633  /// thermal ionization: The ionization of a neutral species through contact with a high temperature surface.
1635 
1636  /// vertical ionization: A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state.
1638 
1639  /// association reaction: The reaction of an ion with a neutral species in which the reactants combine to form a single ion.
1641 
1642  /// alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds.
1644 
1645  /// beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds.
1646  MS_beta_cleavage = 1000411,
1647 
1648  /// buffer gas: An inert gas used for collisional deactivation of internally excited ions.
1649  MS_buffer_gas = 1000412,
1650 
1651  /// charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation.
1653 
1654  /// charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion.
1656 
1657  /// charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion.
1659 
1660  /// charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion.
1662 
1663  /// charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species.
1665 
1666  /// collisional excitation: The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion.
1668 
1669  /// collision gas: An inert gas used for collisional excitation. The term target gas is not recommended.
1670  MS_collision_gas = 1000419,
1671 
1672  /// heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis.
1674 
1675  /// high energy collision: Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV.
1677 
1678  /// high-energy collision-induced dissociation: A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.
1680 
1681  /// HCD (high-energy collision-induced dissociation): A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.
1683 
1684  /// homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis.
1686 
1687  /// hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer.
1689 
1690  /// ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species.
1692 
1693  /// ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral.
1695 
1696  /// ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule.
1698 
1699  /// ion/neutral complex: A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions.
1701 
1702  /// ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants.
1704 
1705  /// ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product.
1707 
1708  /// kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account.
1710 
1711  /// low energy collisions: A collision between an ion and neutral species with translational energy approximately 1000 eV or lower.
1713 
1714  /// low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative.
1716 
1717  /// McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied.
1719 
1720  /// photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1722 
1723  /// multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1725 
1726  /// MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1728 
1729  /// partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral.
1731 
1732  /// ion reaction: Chemical transformation involving an ion.
1733  MS_ion_reaction = 1000437,
1734 
1735  /// superelastic collision: Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners.
1737 
1738  /// surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion.
1740 
1741  /// unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion.
1743 
1744  /// scan: Function or process of the mass spectrometer where it records a spectrum.
1745  MS_scan = 1000441,
1746 
1747  /// spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical analysis.
1748  MS_spectrum = 1000442,
1749 
1750  /// mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio.
1752 
1753  /// m/z Separation Method: m/z Separation Method.
1755 
1756  /// sequential m/z separation method: Sequential m/z separation method.
1758 
1759  /// fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.
1761 
1762  /// FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.
1764 
1765  /// LTQ: Finnigan LTQ MS.
1766  MS_LTQ = 1000447,
1767 
1768  /// LTQ FT: Finnigan LTQ FT MS.
1769  MS_LTQ_FT = 1000448,
1770 
1771  /// LTQ Orbitrap: Finnigan LTQ Orbitrap MS.
1772  MS_LTQ_Orbitrap = 1000449,
1773 
1774  /// LXQ: Finnigan LXQ MS.
1775  MS_LXQ = 1000450,
1776 
1777  /// mass analyzer: Terms used to describe the Analyzer.
1778  MS_mass_analyzer = 1000451,
1779 
1780  /// analyzer (mass analyzer): Terms used to describe the Analyzer.
1782 
1783  /// data transformation: Terms used to describe types of data processing.
1785 
1786  /// data processing (data transformation): Terms used to describe types of data processing.
1788 
1789  /// detector: The device that detects ions.
1790  MS_detector = 1000453,
1791 
1792  /// instrument additional description: Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5.
1794 
1795  /// ion selection attribute: Ion selection properties that are associated with a value.
1797 
1798  /// precursor activation: Terms to describe the precursor activation.
1800 
1801  /// activation (precursor activation): Terms to describe the precursor activation.
1803 
1804  /// sample: Terms to describe the sample.
1805  MS_sample = 1000457,
1806 
1807  /// source: Terms to describe the source.
1808  MS_source = 1000458,
1809 
1810  /// spectrum instrument description: Terms used to describe the spectrum.
1812 
1813  /// unit: Terms to describe units.
1814  MS_unit = 1000460,
1815 
1816  /// additional description: Terms to describe Additional.
1818 
1819  /// ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions.
1820  MS_ion_optics = 1000462,
1821 
1822  /// instrument: Description of the instrument or the mass spectrometer.
1823  MS_instrument = 1000463,
1824 
1825  /// instrument configuration (instrument): Description of the instrument or the mass spectrometer.
1827 
1828  /// mass unit: A unit of measurement for mass.
1830 
1831  /// scan polarity: An acquisition mode to which specifies weather polarity is negative, positive or alternating.
1832  MS_scan_polarity = 1000465,
1833 
1834  /// alternating: Alternating.
1836 
1837  /// 1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS/MS and 11 stages of manual MS/MS.
1839 
1840  /// 6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications.
1842 
1843  /// 6120 Quadrupole LC/MS: The 6120 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition.
1845 
1846  /// 6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition.
1848 
1849  /// 6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition.
1851 
1852  /// 6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
1854 
1855  /// 6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges.
1857 
1858  /// 6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
1860 
1861  /// 6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
1863 
1864  /// 6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
1866 
1867  /// 6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.
1869 
1870  /// 6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.
1872 
1873  /// 1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor.
1875 
1876  /// purgatory: Terms that will likely become obsolete unless there are wails of dissent.
1877  MS_purgatory = 1000479,
1878 
1879  /// mass analyzer attribute: Analyzer properties that are associated with a value.
1881 
1882  /// detector attribute: Detector attribute recognized as a value.
1884 
1885  /// source attribute: Property of a source device that need a value.
1887 
1888  /// Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific.
1890 
1891  /// orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer.
1892  MS_orbitrap = 1000484,
1893 
1894  /// nanospray inlet: Nanospray Inlet.
1896 
1897  /// source potential: Potential difference at the MS source in volts.
1899 
1900  /// ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry.
1902 
1903  /// Hitachi instrument model: Hitachi instrument model.
1905 
1906  /// Varian instrument model: Varian instrument model.
1908 
1909  /// Agilent instrument model: Agilent instrument model.
1911 
1912  /// Dionex instrument model: Dionex instrument model.
1914 
1915  /// Thermo Electron instrument model: Thermo Electron Corporation instrument model.
1917 
1918  /// Finnigan MAT instrument model: Finnigan MAT instrument model.
1920 
1921  /// Thermo Scientific instrument model: Thermo Scientific instrument model.
1923 
1924  /// Applied Biosystems instrument model: Applied Biosystems instrument model.
1926 
1927  /// ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.
1929 
1930  /// instrument attribute: Instrument properties that are associated with a value.
1932 
1933  /// zoom scan: Special scan mode, where data with improved resoltuion is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.
1934  MS_zoom_scan = 1000497,
1935 
1936  /// enhanced resolution scan (zoom scan): Special scan mode, where data with improved resoltuion is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.
1938 
1939  /// full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range.
1940  MS_full_scan = 1000498,
1941 
1942  /// spectrum attribute: Spectrum properties that are associated with a value.
1944 
1945  /// scan window upper limit: The lower m/z bound of a mass spectrometer scan window.
1947 
1948  /// scan window lower limit: The upper m/z bound of a mass spectrometer scan window.
1950 
1951  /// dwell time: The time spent gathering data across a peak.
1952  MS_dwell_time = 1000502,
1953 
1954  /// scan attribute: Scan properties that are associated with a value.
1956 
1957  /// base peak m/z: M/z value of the signal of highest intensity in the mass spectrum.
1958  MS_base_peak_m_z = 1000504,
1959 
1960  /// base peak intensity: The intensity of the greatest peak in the mass spectrum.
1962 
1963  /// ion role: Ion Role.
1964  MS_ion_role = 1000506,
1965 
1966  /// ion attribute: Ion properties that are associated with a value.
1967  MS_ion_attribute = 1000507,
1968 
1969  /// ion chemical type: Ion Type.
1971 
1972  /// activation energy: Activation Energy.
1974 
1975  /// precursor activation attribute: Precursor Activation Attribute.
1977 
1978  /// ms level: Stages of ms achieved in a multi stage mass spectrometry experiment.
1979  MS_ms_level = 1000511,
1980 
1981  /// filter string: A string unique to Thermo instrument describing instrument settings for the scan.
1982  MS_filter_string = 1000512,
1983 
1984  /// binary data array: A data array of values.
1986 
1987  /// m/z array: A data array of m/z values.
1988  MS_m_z_array = 1000514,
1989 
1990  /// intensity array: A data array of intensity values.
1992 
1993  /// charge array: A data array of charge values.
1994  MS_charge_array = 1000516,
1995 
1996  /// signal to noise array: A data array of signal-to-noise values.
1998 
1999  /// binary data type: Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float.
2001 
2002  /// 32-bit integer: Signed 32-bit little-endian integer.
2004 
2005  /// 16-bit float: Signed 16-bit float.
2007 
2008  /// 32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.
2009  MS_32_bit_float = 1000521,
2010 
2011  /// 64-bit integer: Signed 64-bit little-endian integer.
2013 
2014  /// 64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.
2015  MS_64_bit_float = 1000523,
2016 
2017  /// data file content: Describes the data content on the file.
2019 
2020  /// spectrum representation: Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks.
2022 
2023  /// Waters raw file: Waters data file found in a Waters RAW directory, generated from an MS acquisition.
2025 
2026  /// highest observed m/z: Highest m/z value observed in the m/z array.
2028 
2029  /// lowest observed m/z: Lowest m/z value observed in the m/z array.
2031 
2032  /// instrument serial number: Serial Number of the instrument.
2034 
2035  /// file format conversion: Conversion of one file format to another.
2037 
2038  /// software: Software related to the recording or transformation of spectra.
2039  MS_software = 1000531,
2040 
2041  /// Xcalibur: Thermo Finnigan software for data acquisition and analysis.
2042  MS_Xcalibur = 1000532,
2043 
2044  /// Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.
2045  MS_Bioworks = 1000533,
2046 
2047  /// MassLynx: Micromass software for data acquisition and analysis.
2048  MS_MassLynx = 1000534,
2049 
2050  /// FlexAnalysis: Bruker software for data analysis.
2051  MS_FlexAnalysis = 1000535,
2052 
2053  /// Data Explorer: Applied Biosystems software for data acquisition and analysis.
2054  MS_Data_Explorer = 1000536,
2055 
2056  /// 4700 Explorer: Applied Biosystems software for data acquisition and analysis.
2057  MS_4700_Explorer = 1000537,
2058 
2059  /// massWolf: A software for converting Waters raw directory format to mzXML or mzML. massWolf was originally developed at the Institute for Systems Biology.
2060  MS_massWolf = 1000538,
2061 
2062  /// wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML. massWolf was originally developed at the Institute for Systems Biology.
2064 
2065  /// Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysis system.
2067 
2068  /// FlexControl: Bruker software for data acquisition.
2069  MS_FlexControl = 1000540,
2070 
2071  /// ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced \"readraw\".
2072  MS_ReAdW = 1000541,
2073 
2074  /// MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program.
2075  MS_MzStar = 1000542,
2076 
2077  /// data processing action: Data processing attribute used to describe the type of data processing performed on the data file.
2079 
2080  /// Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzData file format.
2082 
2083  /// Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format.
2085 
2086  /// Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file format.
2088 
2089  /// object attribute: Object Attribute.
2091 
2092  /// sample attribute: Sample properties that are associated with a value.
2094 
2095  /// selection window attribute: Selection window properties that are associated with a value.
2097 
2098  /// time unit: Time Unit.
2100 
2101  /// Analyst: AB SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.
2102  MS_Analyst = 1000551,
2103 
2104  /// maldi spot identifier: Maldi Spot Identifier.
2106 
2107  /// Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology.
2108  MS_Trapper = 1000553,
2109 
2110  /// LCQ Deca: ThermoFinnigan LCQ Deca.
2111  MS_LCQ_Deca = 1000554,
2112 
2113  /// LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.
2115 
2116  /// LTQ Orbitrap XL: LTQ Orbitrap XL.
2118 
2119  /// LTQ FT Ultra: LTQ FT Ultra.
2120  MS_LTQ_FT_Ultra = 1000557,
2121 
2122  /// GC Quantum: GC Quantum.
2123  MS_GC_Quantum = 1000558,
2124 
2125  /// spectrum type: Spectrum type.
2126  MS_spectrum_type = 1000559,
2127 
2128  /// mass spectrometer file format: The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.
2130 
2131  /// data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data.
2133 
2134  /// ABI WIFF file: Applied Biosystems WIFF file format.
2135  MS_ABI_WIFF_file = 1000562,
2136 
2137  /// Thermo RAW file: Thermo Scientific RAW file format.
2139 
2140  /// PSI mzData file: Proteomics Standards Inititative mzData file format.
2142 
2143  /// Micromass PKL file: Micromass PKL file format.
2145 
2146  /// ISB mzXML file: Institute of Systems Biology mzXML file format.
2148 
2149  /// Bruker/Agilent YEP file: Bruker/Agilent YEP file format.
2151 
2152  /// MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used to check the integrity of files.
2153  MS_MD5 = 1000568,
2154 
2155  /// SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity.
2156  MS_SHA_1 = 1000569,
2157 
2158  /// spectra combination: Method used to combine the mass spectra.
2160 
2161  /// sum of spectra: Spectra Sum.
2163 
2164  /// binary data compression type: Compression Type.
2166 
2167  /// median of spectra: Spectra is combined by calculating the median of the spectra.
2169 
2170  /// zlib compression: Zlib.
2172 
2173  /// mean of spectra: Spectra is combined by calculating the mean of the spectra.
2175 
2176  /// no compression: No Compression.
2178 
2179  /// raw data file: Describes the type of file and its content.
2180  MS_raw_data_file = 1000577,
2181 
2182  /// source file (raw data file): Describes the type of file and its content.
2184 
2185  /// LCQ Fleet: LCQ Fleet.
2186  MS_LCQ_Fleet = 1000578,
2187 
2188  /// MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2189  MS_MS1_spectrum = 1000579,
2190 
2191  /// full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2193 
2194  /// Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2196 
2197  /// Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2199 
2200  /// Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2202 
2203  /// MSn spectrum: MSn refers to multi-stage MS/MS experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n= 2.
2204  MS_MSn_spectrum = 1000580,
2205 
2206  /// multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n= 2.
2208 
2209  /// nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n= 2.
2211 
2212  /// product ion spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n= 2.
2214 
2215  /// CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
2216  MS_CRM_spectrum = 1000581,
2217 
2218  /// SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2219  MS_SIM_spectrum = 1000582,
2220 
2221  /// MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2223 
2224  /// multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2226 
2227  /// selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2229 
2230  /// SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2231  MS_SRM_spectrum = 1000583,
2232 
2233  /// MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2235 
2236  /// multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2238 
2239  /// selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2241 
2242  /// mzML file: Proteomics Standards Inititative mzML file format.
2243  MS_mzML_file = 1000584,
2244 
2245  /// contact attribute: Details about a person or organization to contact in case of concern or discussion about the file.
2247 
2248  /// contact name: Name of the contact person or organization.
2249  MS_contact_name = 1000586,
2250 
2251  /// contact address: Postal address of the contact person or organization.
2253 
2254  /// contact URL: Uniform Resource Locator related to the contact person or organization.
2255  MS_contact_URL = 1000588,
2256 
2257  /// contact email: Email address of the contact person or organization.
2258  MS_contact_email = 1000589,
2259 
2260  /// contact organization: Home institution of the contact person.
2262 
2263  /// MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program.
2264  MS_MzWiff = 1000591,
2265 
2266  /// smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process.
2267  MS_smoothing = 1000592,
2268 
2269  /// baseline reduction: A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values.
2271 
2272  /// low intensity data point removal: The removal of very low intensity data points that are likely to be spurious noise rather than real signal.
2274 
2275  /// thresholding (low intensity data point removal): The removal of very low intensity data points that are likely to be spurious noise rather than real signal.
2277 
2278  /// time array: A data array of relative time offset values from a reference time.
2279  MS_time_array = 1000595,
2280 
2281  /// measurement method: An attribute of resolution when recording the detector response in absence of the analyte.
2283 
2284  /// ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.
2286 
2287  /// electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.
2289 
2290  /// ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.
2292 
2293  /// pulsed q dissociation: A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
2295 
2296  /// PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
2298 
2299  /// Proteios: Database application and analysis platform for proteomics.
2300  MS_Proteios = 1000600,
2301 
2302  /// ProteinLynx Global Server: Waters software for data analysis.
2304 
2305  /// Shimadzu Biotech instrument model: Shimadzu Biotech instrument model.
2307 
2308  /// Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model.
2310 
2311  /// LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.
2312  MS_LCMS_IT_TOF = 1000604,
2313 
2314  /// LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.
2315  MS_LCMS_2010EV = 1000605,
2316 
2317  /// LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.
2318  MS_LCMS_2010A = 1000606,
2319 
2320  /// AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.
2322 
2323  /// AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.
2324  MS_AXIMA_QIT = 1000608,
2325 
2326  /// AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.
2328 
2329  /// AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS.
2331 
2332  /// AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS.
2334 
2335  /// AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS.
2337 
2338  /// DTA file: Sequest DTA file format.
2339  MS_DTA_file = 1000613,
2340 
2341  /// ProteinLynx Global Server mass spectrum XML file: Peak list file format used by ProteinLynx Global Server.
2343 
2344  /// ProteoWizard: ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
2345  MS_ProteoWizard = 1000615,
2346 
2347  /// pwiz (ProteoWizard): ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
2349 
2350  /// preset scan configuration: A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo \"scan event\", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time.
2352 
2353  /// wavelength array: A data array of electromagnetic radiation wavelength values.
2355 
2356  /// highest observed wavelength: Highest wavelength observed in an EMR spectrum.
2358 
2359  /// lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.
2361 
2362  /// PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum).
2364 
2365  /// photodiode array detector: An array detector used to record spectra in the ultraviolet and visable region of light.
2367 
2368  /// PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visable region of light.
2370 
2371  /// Surveyor PDA: Surveyor PDA.
2372  MS_Surveyor_PDA = 1000622,
2373 
2374  /// Accela PDA: Accela PDA.
2375  MS_Accela_PDA = 1000623,
2376 
2377  /// inductive detector: Inductive detector.
2379 
2380  /// image current detector (inductive detector): Inductive detector.
2382 
2383  /// chromatogram: The representation of detector response versus time.
2384  MS_chromatogram = 1000625,
2385 
2386  /// chromatogram type: Broad category or type of a chromatogram.
2388 
2389  /// selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.
2391 
2392  /// SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.
2394 
2395  /// basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each time point.
2397 
2398  /// low intensity threshold: Threshold below which some action is taken.
2400 
2401  /// data processing parameter: Data processing parameter used in the data processing performed on the data file.
2403 
2404  /// high intensity threshold: Threshold above which some action is taken.
2406 
2407  /// Q-Tof Premier: Waters Q-Tof Premier MS.
2408  MS_Q_Tof_Premier = 1000632,
2409 
2410  /// possible charge state: A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty.
2412 
2413  /// DSQ: ThermoFinnigan DSQ GC-MS.
2414  MS_DSQ = 1000634,
2415 
2416  /// ITQ 700: Thermo Scientific ITQ 700 GC-MS.
2417  MS_ITQ_700 = 1000635,
2418 
2419  /// ITQ 900: Thermo Scientific ITQ 900 GC-MS.
2420  MS_ITQ_900 = 1000636,
2421 
2422  /// ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.
2423  MS_ITQ_1100 = 1000637,
2424 
2425  /// LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.
2426  MS_LTQ_XL_ETD = 1000638,
2427 
2428  /// LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.
2430 
2431  /// DFS: Thermo Scientific DFS HR GC-MS.
2432  MS_DFS = 1000640,
2433 
2434  /// DSQ II: Thermo Scientific DSQ II GC-MS.
2435  MS_DSQ_II = 1000641,
2436 
2437  /// MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.
2438  MS_MALDI_LTQ_XL = 1000642,
2439 
2440  /// MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.
2442 
2443  /// TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.
2445 
2446  /// Element XR: Thermo Scientific Element XR HR-ICP-MS.
2447  MS_Element_XR = 1000645,
2448 
2449  /// Element 2: Thermo Scientific Element 2 HR-ICP-MS.
2450  MS_Element_2 = 1000646,
2451 
2452  /// Element GD: Thermo Scientific Element GD Glow Discharge MS.
2453  MS_Element_GD = 1000647,
2454 
2455  /// GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.
2456  MS_GC_IsoLink = 1000648,
2457 
2458  /// Exactive: Thermo Scientific Exactive MS.
2459  MS_Exactive = 1000649,
2460 
2461  /// Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins.
2463 
2464  /// 3200 QTRAP: AB SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.
2465  MS_3200_QTRAP = 1000651,
2466 
2467  /// 4800 Plus MALDI TOF/TOF: AB SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer.
2469 
2470  /// API 3200: AB SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.
2471  MS_API_3200 = 1000653,
2472 
2473  /// API 5000: AB SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.
2474  MS_API_5000 = 1000654,
2475 
2476  /// QSTAR Elite: AB SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.
2477  MS_QSTAR_Elite = 1000655,
2478 
2479  /// QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.
2480  MS_QSTAR_Pulsar = 1000656,
2481 
2482  /// QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.
2483  MS_QSTAR_XL = 1000657,
2484 
2485  /// 4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.
2487 
2488  /// 4000 Series Explorer Software: AB SCIEX or Applied Biosystems software for data acquisition and analysis.
2490 
2491  /// GPS Explorer: AB SCIEX or Applied Biosystems software for data acquisition and analysis.
2492  MS_GPS_Explorer = 1000661,
2493 
2494  /// LightSight Software: AB SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification.
2496 
2497  /// ProteinPilot Software: AB SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant.
2499 
2500  /// TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.
2502 
2503  /// MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling.
2505 
2506  /// MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.
2508 
2509  /// BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.
2510  MS_BioAnalyst = 1000667,
2511 
2512  /// Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.
2513  MS_Pro_ID = 1000668,
2514 
2515  /// Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT.
2516  MS_Pro_ICAT = 1000669,
2517 
2518  /// Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.
2519  MS_Pro_Quant = 1000670,
2520 
2521  /// Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.
2522  MS_Pro_BLAST = 1000671,
2523 
2524  /// Cliquid: AB SCIEX Cliquid software for data analysis and quantitation.
2525  MS_Cliquid = 1000672,
2526 
2527  /// MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.
2529 
2530  /// MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.
2531  MS_MultiQuant = 1000674,
2532 
2533  /// 6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2535 
2536  /// 6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2538 
2539  /// 6520 Quadrupole Time-of-Flight LC/MS: The 6520 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2541 
2542  /// MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.
2544 
2545  /// MassHunter Easy Access: Software for open access data acquisition.
2547 
2548  /// MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments.
2550 
2551  /// MassHunter Quantitative Analysis: Software for quantitation of Triple Quadruople and Quadrupole Time-of-Flight data.
2553 
2554  /// MassHunter Metabolite ID: Software for identification of metabolites.
2556 
2557  /// MassHunter BioConfirm: Software for protein characterization.
2559 
2560  /// Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
2561  MS_Genespring_MS = 1000684,
2562 
2563  /// MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
2565 
2566  /// METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites.
2567  MS_METLIN = 1000686,
2568 
2569  /// Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of complex protein digest mixtures.
2571 
2572  /// 6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass spectrometers.
2574 
2575  /// Agilent software: Agilent software for data acquisition and analysis.
2577 
2578  /// AB SCIEX software: AB SCIEX or Applied Biosystems software for data acquisition and analysis.
2580 
2581  /// Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis.
2583 
2584  /// Bruker software: Bruker software for data acquisition and analysis.
2586 
2587  /// Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.
2589 
2590  /// Waters software: Waters software for data acquisition and analysis.
2592 
2593  /// apex ultra: Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
2594  MS_apex_ultra = 1000695,
2595 
2596  /// autoflex III smartbeam: Bruker Daltonics' autoflex III smartbeam: MALDI TOF.
2598 
2599  /// Bruker Daltonics HCT Series: Bruker Daltonics HCT Series.
2601 
2602  /// HCTultra: Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI.
2603  MS_HCTultra = 1000698,
2604 
2605  /// HCTultra PTM: Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.
2606  MS_HCTultra_PTM = 1000699,
2607 
2608  /// HCTultra ETD II: Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD.
2610 
2611  /// microflex LT: Bruker Daltonics' microflex LT: MALDI TOF.
2612  MS_microflex_LT = 1000701,
2613 
2614  /// micrOTOF: Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI.
2615  MS_micrOTOF = 1000702,
2616 
2617  /// micrOTOF-Q: Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.
2618  MS_micrOTOF_Q = 1000703,
2619 
2620  /// micrOTOF-Q II: Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI.
2621  MS_micrOTOF_Q_II = 1000704,
2622 
2623  /// ultraflex III TOF/TOF: Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF.
2625 
2626  /// apexControl: Bruker software for data acquisition.
2627  MS_apexControl = 1000706,
2628 
2629  /// BioTools: Bruker software for data analysis.
2630  MS_BioTools = 1000707,
2631 
2632  /// CLINPROT: Bruker CLINPROT software.
2633  MS_CLINPROT = 1000708,
2634 
2635  /// CLINPROT micro: Bruker CLINPROT micro software.
2637 
2638  /// CLINPROT robot: Bruker CLINPROT robot software.
2640 
2641  /// ClinProTools: Bruker ClinProTools software.
2642  MS_ClinProTools = 1000711,
2643 
2644  /// Compass: Bruker Compass software.
2645  MS_Compass = 1000712,
2646 
2647  /// Compass for HCT/esquire: Bruker Compass for HCT/esquire software.
2649 
2650  /// Compass for micrOTOF: Bruker Compass for micrOTOF software.
2652 
2653  /// Compass OpenAccess: Bruker compass OpenAccess software.
2655 
2656  /// Compass Security Pack: Bruker compass Security Pack software.
2658 
2659  /// CompassXport: Bruker stand-alone software for data conversion.
2660  MS_CompassXport = 1000717,
2661 
2662  /// CompassXtract: Bruker software library for data access.
2663  MS_CompassXtract = 1000718,
2664 
2665  /// DataAnalysis: Bruker software for data analysis.
2666  MS_DataAnalysis = 1000719,
2667 
2668  /// dpControl: Bruker software for data acquisition.
2669  MS_dpControl = 1000720,
2670 
2671  /// esquireControl: Bruker software for data acquisition.
2673 
2674  /// flexImaging: Bruker software for data analysis.
2675  MS_flexImaging = 1000722,
2676 
2677  /// GENOLINK: Bruker GENOLINK software.
2678  MS_GENOLINK = 1000723,
2679 
2680  /// GenoTools: Bruker GenoTools software.
2681  MS_GenoTools = 1000724,
2682 
2683  /// HCTcontrol: Bruker software for data acquisition.
2684  MS_HCTcontrol = 1000725,
2685 
2686  /// micrOTOFcontrol: Bruker software for data acquisition.
2688 
2689  /// PolyTools: Bruker PolyTools software.
2690  MS_PolyTools = 1000727,
2691 
2692  /// ProfileAnalysis: Bruker software for data analysis.
2694 
2695  /// PROTEINEER: Bruker PROTEINEER software.
2696  MS_PROTEINEER = 1000729,
2697 
2698  /// PROTEINEER dp: Bruker PROTEINEER dp software.
2699  MS_PROTEINEER_dp = 1000730,
2700 
2701  /// PROTEINEER fc: Bruker PROTEINEER fc software.
2702  MS_PROTEINEER_fc = 1000731,
2703 
2704  /// PROTEINEER spII: Bruker PROTEINEER spII software.
2706 
2707  /// PROTEINEER-LC: Bruker PROTEINEER-LC software.
2708  MS_PROTEINEER_LC = 1000733,
2709 
2710  /// ProteinScape: Bruker ProteinScape software.
2711  MS_ProteinScape = 1000734,
2712 
2713  /// PureDisk: BrukerPureDisk software.
2714  MS_PureDisk = 1000735,
2715 
2716  /// QuantAnalysis: Bruker software for data analysis.
2717  MS_QuantAnalysis = 1000736,
2718 
2719  /// spControl: Bruker software for data acquisition.
2720  MS_spControl = 1000737,
2721 
2722  /// TargetAnalysis: Bruker TargetAnalysis software.
2724 
2725  /// WARP-LC: Bruker WARP-LC software.
2726  MS_WARP_LC = 1000739,
2727 
2728  /// parameter file: Parameter file used to configure the acquisition of raw data on the instrument.
2730 
2731  /// Conversion to dta: Conversion to dta format.
2733 
2734  /// Bioworks SRF file: Thermo Finnigan SRF file format.
2736 
2737  /// TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.
2739 
2740  /// selected ion m/z: Mass-to-charge ratio of the ion selected for fragmentation.
2742 
2743  /// retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free proteomics.
2745 
2746  /// high intensity data point removal: The removal of very high intensity data points.
2748 
2749  /// completion time: The time that a data processing action was finished.
2751 
2752  /// SSQ 7000: ThermoFinnigan SSQ 7000 MS.
2753  MS_SSQ_7000 = 1000748,
2754 
2755  /// TSQ 7000: ThermoFinnigan TSQ 7000 MS.
2756  MS_TSQ_7000 = 1000749,
2757 
2758  /// TSQ: ThermoFinnigan TSQ MS.
2759  MS_TSQ = 1000750,
2760 
2761  /// TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.
2763 
2764  /// TOPP software: TOPP (The OpenMS proteomics pipeline) software.
2765  MS_TOPP_software = 1000752,
2766 
2767  /// BaselineFilter: Removes the baseline from profile spectra using a top-hat filter.
2769 
2770  /// DBExporter: Exports data from an OpenMS database to a file.
2771  MS_DBExporter = 1000754,
2772 
2773  /// DBImporter: Imports data to an OpenMS database.
2774  MS_DBImporter = 1000755,
2775 
2776  /// FileConverter: Converts between different MS file formats.
2777  MS_FileConverter = 1000756,
2778 
2779  /// FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files.
2780  MS_FileFilter = 1000757,
2781 
2782  /// FileMerger: Merges several MS files into one file.
2783  MS_FileMerger = 1000758,
2784 
2785  /// InternalCalibration: Applies an internal calibration.
2787 
2788  /// MapAligner: Corrects retention time distortions between maps.
2789  MS_MapAligner = 1000760,
2790 
2791  /// MapNormalizer: Normalizes peak intensities in an MS run.
2792  MS_MapNormalizer = 1000761,
2793 
2794  /// NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.
2795  MS_NoiseFilter = 1000762,
2796 
2797  /// PeakPicker: Finds mass spectrometric peaks in profile mass spectra.
2798  MS_PeakPicker = 1000763,
2799 
2800  /// Resampler: Transforms an LC/MS map into a resampled map or a png image.
2801  MS_Resampler = 1000764,
2802 
2803  /// SpectraFilter: Applies a filter to peak spectra.
2804  MS_SpectraFilter = 1000765,
2805 
2806  /// TOFCalibration: Applies time of flight calibration.
2808 
2809  /// native spectrum identifier format: Describes how the native spectrum identifiers are formated.
2811 
2812  /// nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers are formated.
2814 
2815  /// Thermo nativeID format: controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger.
2817 
2818  /// Waters nativeID format: function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
2820 
2821  /// WIFF nativeID format: sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger.
2823 
2824  /// Bruker/Agilent YEP nativeID format: scan=xsd:nonNegativeInteger.
2826 
2827  /// Bruker BAF nativeID format: scan=xsd:nonNegativeInteger.
2829 
2830  /// Bruker FID nativeID format: file=xsd:IDREF.
2832 
2833  /// multiple peak list nativeID format: index=xsd:nonNegativeInteger.
2835 
2836  /// single peak list nativeID format: file=xsd:IDREF.
2838 
2839  /// scan number only nativeID format: scan=xsd:nonNegativeInteger.
2841 
2842  /// spectrum identifier nativeID format: spectrum=xsd:nonNegativeInteger.
2844 
2845  /// charge state calculation: A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm.
2847 
2848  /// below precursor intensity dominance charge state calculation: Infers charge state as single or amibiguously multiple by determining the fraction of intensity below the precursor m/z.
2850 
2851  /// precursor recalculation: A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions.
2853 
2854  /// msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans.
2856 
2857  /// Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques.
2859 
2860  /// LOWESS smoothing: Reduces intensity spikes by applying a modeling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible.
2862 
2863  /// Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
2865 
2866  /// binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
2868 
2869  /// Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
2871 
2872  /// moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2874 
2875  /// box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2877 
2878  /// boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2880 
2881  /// sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2883 
2884  /// non-standard data array: A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added.
2886 
2887  /// inclusive low intensity threshold: Threshold at or below which some action is taken.
2889 
2890  /// inclusive high intensity threshold: Threshold at or above which some action is taken.
2892 
2893  /// enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions.
2895 
2896  /// time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation.
2898 
2899  /// enhanced resolution scan: Scan with enhanced resolution.
2901 
2902  /// isolation window attribute: Isolation window parameter.
2904 
2905  /// isolation window upper limit: The highest m/z being isolated in an isolation window.
2907 
2908  /// isolation window lower limit: The lowest m/z being isolated in an isolation window.
2910 
2911  /// no combination: Use this term if only one scan was recorded or there is no information about scans available.
2913 
2914  /// spectrum title: A free-form text title describing a spectrum.
2916 
2917  /// peak list scans: A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.
2919 
2920  /// peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.
2922 
2923  /// custom unreleased software tool: A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added.
2925 
2926  /// mass resolving power: The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported.
2928 
2929  /// area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.
2931 
2932  /// sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.
2934 
2935  /// height peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.
2937 
2938  /// max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.
2940 
2941  /// analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value.
2943 
2944  /// electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.
2946 
2947  /// EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.
2949 
2950  /// emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited.
2952 
2953  /// absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited.
2955 
2956  /// Th/s: Unit describing the scan rate of a spectrum in Thomson per second.
2957  MS_Th_s = 1000807,
2958 
2959  /// chromatogram attribute: Chromatogram properties that are associated with a value.
2961 
2962  /// chromatogram title: A free-form text title describing a chromatogram.
2964 
2965  /// mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a function of the retention time.
2967 
2968  /// electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function of the retention time.
2970 
2971  /// EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnetic properties as a function of the retention time.
2973 
2974  /// absorption chromatogram: The measurement of light absorbed by the sample as a function of the retention time.
2976 
2977  /// emission chromatogram: The measurement of light emitted by the sample as a function of the retention time.
2979 
2980  /// counts per second: The number of counted events observed per second in one or a group of elements of a detector.
2982 
2983  /// Bruker BAF file: Bruker BAF raw file format.
2985 
2986  /// Bruker U2 file: Bruker HyStar U2 file format.
2988 
2989  /// HyStar: Bruker software for hyphenated experiments.
2990  MS_HyStar = 1000817,
2991 
2992  /// Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.
2994 
2995  /// Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.
2997 
2998  /// flow rate array: A data array of flow rate measurements.
3000 
3001  /// pressure array: A data array of pressure measurements.
3003 
3004  /// temperature array: A data array of temperature measurements.
3006 
3007  /// Bruker U2 nativeID format: declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
3009 
3010  /// no nativeID format: No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format.
3012 
3013  /// Bruker FID file: Bruker FID file format.
3015 
3016  /// elution time: The time of elution from a chromatographic column, relative to the start of the chromatography.
3017  MS_elution_time = 1000826,
3018 
3019  /// isolation window target m/z: The primary or reference m/z about which the isolation window is defined.
3021 
3022  /// isolation window lower offset: The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.
3024 
3025  /// isolation window upper offset: The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.
3027 
3028  /// sample preparation: Properties of the preparation steps which took place before the measurement was performed.
3030 
3031  /// MALDI matrix application: Attributes to describe the technique how the sample is prepared with the matrix solution.
3033 
3034  /// matrix application type: Describes the technique how the matrix is put on the sample target.
3036 
3037  /// matrix solution: Describes the chemical solution used as matrix.
3039 
3040  /// matrix solution concentration: Concentration of the chemical solution used as matrix.
3042 
3043  /// dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.
3045 
3046  /// printed MALDI matrix preparation: Printed MALDI matrix preparation.
3048 
3049  /// sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.
3051 
3052  /// precoated MALDI sample plate: Precoated MALDI sample plate.
3054 
3055  /// laser: Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation.
3056  MS_laser = 1000840,
3057 
3058  /// laser attribute: Laser properties that are associated with a value.
3060 
3061  /// laser type: Type of laser used used for desorption purpose.
3062  MS_laser_type = 1000842,
3063 
3064  /// wavelength: The distance between two peaks of the emitted laser beam.
3065  MS_wavelength = 1000843,
3066 
3067  /// focus diameter x: Describes the diameter of the laser beam in x direction.
3069 
3070  /// focus diameter y: Describes the diameter of the laser beam in y direction.
3072 
3073  /// pulse energy: Describes output energy of the laser system. May be attenuated by filters or other means.
3074  MS_pulse_energy = 1000846,
3075 
3076  /// pulse duration: Describes how long the laser beam was emitted from the laser device.
3078 
3079  /// attenuation: Describes the reduction of the intensity of the laser beam energy.
3080  MS_attenuation = 1000848,
3081 
3082  /// impact angle: Describes the angle between the laser beam and the sample target.
3083  MS_impact_angle = 1000849,
3084 
3085  /// gas laser: Laser which is powered by a gaseous medium.
3086  MS_gas_laser = 1000850,
3087 
3088  /// solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states.
3090 
3091  /// dye-laser: Dye lasers use an organic dye as the gain medium.
3092  MS_dye_laser = 1000852,
3093 
3094  /// free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term.
3096 
3097  /// LTQ XL: Thermo Scientific LTQ XL MS.
3098  MS_LTQ_XL = 1000854,
3099 
3100  /// LTQ Velos: Thermo Scientific LTQ Velos MS.
3101  MS_LTQ_Velos = 1000855,
3102 
3103  /// LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.
3104  MS_LTQ_Velos_ETD = 1000856,
3105 
3106  /// run attribute: Properties of the described run.
3107  MS_run_attribute = 1000857,
3108 
3109  /// fraction identifier: Identier string that describes the sample fraction. This identifer should contain the fraction number(s) or similar information.
3111 
3112  /// molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of the compound that can participate in a chemical reaction.
3113  MS_molecule = 1000859,
3114 
3115  /// peptide: A compound of low molecular weight that is composed of two or more amino acids.
3116  MS_peptide = 1000860,
3117 
3118  /// chemical compound attribute: A describable property of a chemical compound.
3120 
3121  /// isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric field.
3123 
3124  /// pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an electric field.
3126 
3127  /// predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.
3129 
3130  /// predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.
3132 
3133  /// chemical compound formula: A combination of symbols used to express the chemical composition of a compound.
3135 
3136  /// empirical formula: A chemical formula which expresses the proportions of the elements present in a substance.
3138 
3139  /// molecular formula: A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked.
3141 
3142  /// structural formula: A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other.
3144 
3145  /// SMILES string: The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string.
3146  MS_SMILES_string = 1000868,
3147 
3148  /// collision gas pressure: The gas pressure of the collision gas used for collisional excitation.
3150 
3151  /// 4000 QTRAP: AB SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.
3153 
3154  /// SRM software: Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs.
3155  MS_SRM_software = 1000871,
3156 
3157  /// MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.
3158  MS_MaRiMba = 1000872,
3159 
3160  /// peptide attribute calculation software: Software used to predict or calculate numberical attributes of peptides.
3162 
3163  /// SSRCalc: Sequence Specific Retention Calculator esimates the retention time of peptides based on their sequence.
3164  MS_SSRCalc = 1000874,
3165 
3166  /// declustering potential: Potential difference between the orifice and the skimmer in volts.
3168 
3169  /// cone voltage: Potential difference between the sampling cone/orifice in volts.
3170  MS_cone_voltage = 1000876,
3171 
3172  /// tube lens voltage: Potential difference setting of the tube lens in volts.
3174 
3175  /// external reference identifier: An identifier/accession number to an external reference database.
3177 
3178  /// PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).
3180 
3181  /// interchannel delay: The duration of intervals between scanning, during which the instrument configuration is switched.
3183 
3184  /// chemical compound: A substance formed by chemical union of two or more elements or ingredients in definite proportion by weight.
3186 
3187  /// protein: A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA coding for the protein.
3188  MS_protein = 1000882,
3189 
3190  /// protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).
3192 
3193  /// protein attribute: An nonphysical attribute describing a specific protein.
3195 
3196  /// protein accession: Accession number for a specific protein in a database.
3198 
3199  /// protein name: A long name describing the function of the protein.
3200  MS_protein_name = 1000886,
3201 
3202  /// peptide attribute: An nonphysical attribute that can be used to describe a peptide.
3204 
3205  /// unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide, without encoding any amino acid mass modifications that might be present.
3207 
3208  /// modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide plus the encoding any amino acid modifications that are present.
3210 
3211  /// peptide labeling state: A state description of how a peptide might be isotopically or isobarically labelled.
3213 
3214  /// heavy labeled peptide: A peptide that has been created or labeled with some heavier-than-usual isotopes.
3216 
3217  /// unlabeled peptide: A peptide that has not been labeled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\".
3219 
3220  /// light labeled peptide (unlabeled peptide): A peptide that has not been labeled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\".
3222 
3223  /// peptide group label: An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label.
3225 
3226  /// retention time: A measure of the interval relative to the beginning of a mass spectrometric run when a peptide will exit the chromatographic column.
3228 
3229  /// local retention time: A measure of the interval relative to the beginning of a mass spectrometric run when a peptide will exit an unspecified local chromatographic column and instrumental setup.
3231 
3232  /// normalized retention time: A measure of the interval relative to the beginning of a mass spectrometric run when a peptide will exit a standardized reference chromatographic column and instrumental setup.
3234 
3235  /// predicted retention time: A time interval relative to the beginning of a mass spectrometric run when a peptide will exit a chromatographic column as predicted by a referenced software application.
3237 
3238  /// standard: Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence.
3239  MS_standard = 1000898,
3240 
3241  /// de facto standard: A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard.
3243 
3244  /// minimum information standard: A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result.
3246 
3247  /// retention time normalization standard: A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column.
3249 
3250  /// H-PINS retention time normalization standard: The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column.
3252 
3253  /// product ion series ordinal: The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion).
3255 
3256  /// product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z.
3258 
3259  /// percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries.
3261 
3262  /// peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc.
3264 
3265  /// peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant.
3267 
3268  /// transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.
3269  MS_transition = 1000908,
3270 
3271  /// reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.
3273 
3274  /// transition validation method: The strategy used to validate that a transition is effective.
3276 
3277  /// transition optimized on specified instrument: The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined.
3279 
3280  /// transition validated with an MS/MS spectrum on specified instrument: The transition has been validated by obtaining an MS/MS spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term.
3282 
3283  /// transition purported from an MS/MS spectrum on a different, specified instrument: The transition has been purported by obtaining an MS/MS spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad).
3285 
3286  /// transition predicted by informatic analysis: The transition has been predicted by informatics software without any direct spectral evidence.
3288 
3289  /// tab delimited text file: A file that has two or more columns of tabular data where each column is separated by a TAB character.
3291 
3292  /// retention time window attribute: An attribute of a window in time about which a peptide might elute from the column.
3294 
3295  /// retention time window lower offset: The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymetric about the target time.
3297 
3298  /// retention time window upper offset: The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymetric about the target time.
3300 
3301  /// target list: A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically.
3302  MS_target_list = 1000918,
3303 
3304  /// target inclusion exclusion priority: A priority setting specifying whether included or excluded targets have priority over the other.
3306 
3307  /// includes supersede excludes: A priority setting specifying that included targets have priority over the excluded targets if there is a conflict.
3309 
3310  /// excludes supersede includes: A priority setting specifying that excluded targets have priority over the included targets if there is a conflict.
3312 
3313  /// Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington. https://brendanx-uw1.gs.washington.edu/labkey/wiki/home/software/Skyline/page.view?name=default.
3314  MS_Skyline = 1000922,
3315 
3316  /// TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology.
3317  MS_TIQAM = 1000923,
3318 
3319  /// MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.
3321 
3322  /// ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology.
3323  MS_ATAQS = 1000925,
3324 
3325  /// product interpretation rank: The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1.
3327 
3328  /// ion injection time: The length of time spent filling an ion trapping device.
3330 
3331  /// calibration spectrum: A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample.
3333 
3334  /// Shimadzu Biotech nativeID format: source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger.
3336 
3337  /// Shimadzu Biotech database entity: Shimadzu Biotech format.
3339 
3340  /// QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.
3341  MS_QTRAP_5500 = 1000931,
3342 
3343  /// TripleTOF 5600: AB SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
3345 
3346  /// protein modifications: Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation.
3348 
3349  /// gene name: Name of the gene from which the protein is translated.
3350  MS_gene_name = 1000934,
3351 
3352  /// spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra.
3354 
3355  /// Sequest:CleavesAt:
3357 
3358  /// Sequest:ViewCV: Branch containing the CV terms for Sequest View Input Parameters.
3360 
3361  /// Sequest:OutputLines:
3363 
3364  /// Sequest:DescriptionLines:
3366 
3367  /// de novo search: A de novo sequencing search (without database).
3369 
3370  /// search database details: Details about the database searched.
3372 
3373  /// database source: The organisation, project or laboratory from where the database is obtained (uniprot, ncbi, ebi, other).
3375 
3376  /// database name: The name of the search database (nr, SwissProt or est_human).
3377  MS_database_name = 1001013,
3378 
3379  /// database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view.
3381 
3382  /// database original uri: URI, from where the search database was originally downloaded.
3384 
3385  /// database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database .
3387 
3388  /// database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search database.
3390 
3391  /// database type: Database containing amino acid or nucleic acid sequences.
3392  MS_database_type = 1001018,
3393 
3394  /// database filtering: Was there filtering used on the database.
3396 
3397  /// DB filter taxonomy: A taxonomy filter was to the database search.
3399 
3400  /// DB filter on accession numbers: Filtering applied specifically by accession number pattern.
3402 
3403  /// DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value.
3404  MS_DB_MW_filter = 1001022,
3405 
3406  /// DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value.
3407  MS_DB_PI_filter = 1001023,
3408 
3409  /// translation frame: OSBOLETE: use attribute in mzIdentML instead. The translated open reading frames from a nucleotide database considered in the search (range: 1-6).
3411 
3412  /// translation table: The translation table used to translate the nucleotides to amino acids.
3414 
3415  /// Sequest:NormalizeXCorrValues:
3417 
3418  /// DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern.
3420 
3421  /// Sequest:SequenceHeaderFilter:
3423 
3424  /// number of sequences searched: The number of sequences (proteins / nucleotides) from the database search after filtering.
3426 
3427  /// number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum.
3429 
3430  /// spectral library search: A search using a library of spectra.
3432 
3433  /// Sequest:SequencePartialFilter:
3435 
3436  /// date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run.
3438 
3439  /// search time taken: The time taken to complete the search in seconds.
3441 
3442  /// Sequest:ShowFragmentIons:
3444 
3445  /// Sequest:Consensus: Specify depth as value of the CVParam!
3447 
3448  /// intermediate analysis format: Type of the source file, the mzIdentML was created from.
3450 
3451  /// Sequest:sortCV: Branch containing the CV terms for Sequest View / Sort Input Parameters.
3453 
3454  /// Sequest:LimitTo: Specify \"number of dtas shown\" as value of the CVParam!
3456 
3457  /// cleavage agent details: Details of cleavage agent (enzyme).
3459 
3460  /// cleavage agent name: The name of the cleavage agent.
3462 
3463  /// Sequest:sort_by_dCn:
3465 
3466  /// Sequest:sort_by_dM:
3468 
3469  /// Sequest:sort_by_Ions:
3471 
3472  /// Sequest:sort_by_MH+:
3474 
3475  /// Sequest:sort_by_P:
3477 
3478  /// multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any.
3480 
3481  /// Sequest:sort_by_PreviousAminoAcid:
3483 
3484  /// Sequest:sort_by_Ref:
3486 
3487  /// modification parameters: Modification parameters for the search engine run.
3489 
3490  /// modification specificity rule: The specificity rules for the modifications applied by the search engine.
3492 
3493  /// tolerance on types: OBSOLETE: Tolerance on types.
3495 
3496  /// quality estimation by manual validation: The quality estimation was done manually.
3498 
3499  /// Sequest:sort_by_RSp:
3501 
3502  /// quality estimation method details: Method for quality estimation (manually or with decoy database).
3504 
3505  /// neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD?
3507 
3508  /// Mascot MGF file:
3510 
3511  /// TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms!
3513 
3514  /// ions series considered in search: The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine.
3516 
3517  /// Sequest:sort_by_Sp:
3519 
3520  /// Sequest:sort_by_TIC:
3522 
3523  /// Sequest:sort_by_Scan:
3525 
3526  /// Sequest:sort_by_Sequence:
3528 
3529  /// Sequest:sort_by_Sf:
3531 
3532  /// database type amino acid: Database contains amino acid sequences.
3534 
3535  /// database type nucleotide: Database contains nucleid acid sequences.
3537 
3538  /// search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS-MS).
3539  MS_search_type = 1001080,
3540 
3541  /// pmf search: A peptide mass fingerprint search.
3542  MS_pmf_search = 1001081,
3543 
3544  /// tag search: A sequence tag search.
3545  MS_tag_search = 1001082,
3546 
3547  /// ms-ms search: An ms/ms search (with fragment ions).
3548  MS_ms_ms_search = 1001083,
3549 
3550  /// database nr:
3551  MS_database_nr = 1001084,
3552 
3553  /// protein result details: Protein level information.
3555 
3556  /// Sequest:sort_by_XCorr:
3558 
3559  /// Sequest:ProcessCV: Branch containing the CV terms for Sequest View / Process Input Parameters.
3561 
3562  /// protein description: The protein description line from the sequence entry in the source database FASTA file.
3564 
3565  /// molecule taxonomy: The taxonomy of the resultant molecule from the search.
3567 
3568  /// taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT).
3570 
3571  /// NoEnzyme:
3573 
3574  /// peptide identification confidence metric: Peptide identification confidence metric for a peptide (p-value, Expect value, confidence, local FDR).
3576 
3577  /// sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can be calculated).
3579 
3580  /// Sequest:sort_by_z:
3582 
3583  /// Sequest:ProcessAll:
3585 
3586  /// Sequest:TopPercentMostIntense: Specify \"percentage\" as value of the CVParam!
3588 
3589  /// distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a minimal confidence threshold.
3591 
3592  /// confident distinct peptide sequences: This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere.
3594 
3595  /// confident peptide qualification: The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than.
3597 
3598  /// confident peptide sequence number: This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere.
3600 
3601  /// protein group/subset relationship: Branch containing protein group/subset relationships.
3603 
3604  /// Sequest:Chromatogram:
3606 
3607  /// Sequest:InfoAndLog:
3609 
3610  /// database SwissProt:
3612 
3613  /// peptide result details: Peptide level information.
3615 
3616  /// Sequest:TopNumber: Specify \"number\" as value of the CVParam!
3618 
3619  /// data stored in database: Source file for this mzIdentML was a data set in a database.
3621 
3622  /// param: a ion:
3623  MS_param__a_ion = 1001108,
3624 
3625  /// Sequest:CullTo: Specify cull string as value of the CVParam!
3627 
3628  /// Sequest:modeCV: Branch containing the CV terms for Sequest Mode Input Parameters.
3630 
3631  /// Sequest:Full:
3632  MS_Sequest_Full = 1001111,
3633 
3634  /// n-terminal flanking residue: The residue preceeding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein.
3636 
3637  /// c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein.
3639 
3640  /// retention time(s): Retention time of the spectrum from the source file.
3642 
3643  /// scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData.
3645 
3646  /// single protein result details: Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group).
3648 
3649  /// theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modifications).
3651 
3652  /// param: b ion:
3653  MS_param__b_ion = 1001118,
3654 
3655  /// param: c ion:
3656  MS_param__c_ion = 1001119,
3657 
3658  /// Sequest:FormatAndLinks:
3660 
3661  /// number of matched peaks: The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count.
3663 
3664  /// ions series considered: The ion series that were used during the calculation of the count (e.g. b, y, a, b, c, y, z, b, b-NH3, b-H20, b+, z, z-, z+, y-H3PO4, immonium).
3666 
3667  /// number of peaks used: The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't.
3669 
3670  /// number of peaks submitted: The number of peaks from the original peaks listed that were submitted to the search engine.
3672 
3673  /// manual validation: Result of quality estimation: decision of a manual validation.
3675 
3676  /// Sequest:Fast:
3677  MS_Sequest_Fast = 1001126,
3678 
3679  /// peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this peptide.
3681 
3682  /// Sequest:selectCV: Branch containing the CV terms for Sequest Select Input Parameters.
3684 
3685  /// quantification information: Quantification information.
3687 
3688  /// peptide raw area: Peptide raw area.
3690 
3691  /// error on peptide area: Error on peptide area.
3693 
3694  /// peptide ratio: Peptide ratio.
3695  MS_peptide_ratio = 1001132,
3696 
3697  /// error on peptide ratio: Error on peptide ratio.
3699 
3700  /// protein ratio: Protein ratio.
3701  MS_protein_ratio = 1001134,
3702 
3703  /// error on protein ratio: Error on protein ratio.
3705 
3706  /// p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).
3708 
3709  /// absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample.
3711 
3712  /// error on absolute quantity: Error on absolute quantity.
3714 
3715  /// quantitation software name: Quantitation software name.
3717 
3718  /// quantitation software version: Quantitation software version.
3720 
3721  /// intensity of precursor ion: The intensity of the precursor ion.
3723 
3724  /// database IPI_human:
3726 
3727  /// search engine specific score for peptides:
3729 
3730  /// Sequest:SelectDefault:
3732 
3733  /// Sequest:SelectAdvancedCV: Branch containing the CV terms for Sequest Select Advanced Input Parameters.
3735 
3736  /// param: a ion-NH3:
3738 
3739  /// protein ambiguity group result details:
3741 
3742  /// param: a ion-H2O: Ion a - H2O if a significant and fragment includes STED.
3744 
3745  /// param: b ion-NH3:
3747 
3748  /// param: b ion-H2O: Ion b - H2O if b significant and fragment includes STED.
3750 
3751  /// param: y ion-NH3:
3753 
3754  /// param: y ion-H2O: Ion y - H2O if y significant and fragment includes STED.
3756 
3757  /// search engine specific score: Search engine specific scores.
3759 
3760  /// Sequest:probability: The SEQUEST result 'Probability'.
3762 
3763  /// Sequest:xcorr: The SEQUEST result 'XCorr'.
3764  MS_Sequest_xcorr = 1001155,
3765 
3766  /// Sequest:deltacn: The SEQUEST result 'DeltaCn'.
3768 
3769  /// Sequest:sp: The SEQUEST result 'Sp' (protein).
3770  MS_Sequest_sp = 1001157,
3771 
3772  /// Sequest:Uniq:
3773  MS_Sequest_Uniq = 1001158,
3774 
3775  /// Sequest:expectation value: The SEQUEST result 'Expectation value'.
3777 
3778  /// Sequest:sf: The SEQUEST result 'Sf'.
3779  MS_Sequest_sf = 1001160,
3780 
3781  /// Sequest:matched ions: The SEQUEST result 'Matched Ions'.
3783 
3784  /// Sequest:total ions: The SEQUEST result 'Total Ions'.
3786 
3787  /// Sequest:consensus score: The SEQUEST result 'Consensus Score'.
3789 
3790  /// Paragon:unused protscore: The Paragon result 'Unused ProtScore'.
3792 
3793  /// Paragon:total protscore: The Paragon result 'Total ProtScore'.
3795 
3796  /// Paragon:score: The Paragon result 'Score'.
3797  MS_Paragon_score = 1001166,
3798 
3799  /// Paragon:confidence: The Paragon result 'Confidence'.
3801 
3802  /// Paragon:expression error factor: The Paragon result 'Expression Error Factor'.
3804 
3805  /// Paragon:expression change p-value: The Paragon result 'Expression change P-value'.
3807 
3808  /// Paragon:contrib: The Paragon result 'Contrib'.
3810 
3811  /// Mascot:score: The Mascot result 'Score'.
3812  MS_Mascot_score = 1001171,
3813 
3814  /// Mascot:expectation value: The Mascot result 'expectation value'.
3816 
3817  /// Mascot:matched ions: The Mascot result 'Matched ions'.
3819 
3820  /// Mascot:total ions: The Mascot result 'Total ions'.
3822 
3823  /// peptide shared in multiple proteins:
3825 
3826  /// (?<=[KR])(?!P):
3828 
3829  /// number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search.
3831 
3832  /// database EST:
3833  MS_database_EST = 1001178,
3834 
3835  /// Cleavage agent regular expression: Branch containing regular expressions for cleavage enzymes.
3837 
3838  /// search statistics: The details of the actual run of the search.
3840 
3841  /// modification specificity N-term: As parameter for search engine: apply the modification only N-terminal.
3843 
3844  /// modification specificity C-term: As parameter for search engine: apply the modification only C-terminal.
3846 
3847  /// p-value: Quality estimation by p-value.
3849 
3850  /// Expect value: Result of quality estimation: Expect value.
3851  MS_Expect_value = 1001192,
3852 
3853  /// confidence score: Result of quality estimation: confidence score.
3855 
3856  /// quality estimation with decoy database: Quality estimation by decoy database.
3858 
3859  /// decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order.
3861 
3862  /// decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass).
3864 
3865  /// DB composition target+decoy: Decoy database composition: database contains original (target) and decoy entries.
3867 
3868  /// protein identification confidence metric: Protein identification confidence metric (p-value, Expect value, confidence, local FDR).
3870 
3871  /// Mascot DAT file: Source file for this mzIdentML was a Mascot DAT file.
3873 
3874  /// Sequest out file: Source file for this mzIdentML was ONE Sequest out file.
3876 
3877  /// DB MW filter maximum:
3879 
3880  /// DB MW filter minimum:
3882 
3883  /// DB PI filter maximum:
3885 
3886  /// DB PI filter minimum:
3888 
3889  /// Mascot:
3890  MS_Mascot = 1001207,
3891 
3892  /// Sequest:
3893  MS_Sequest = 1001208,
3894 
3895  /// Phenyx:
3896  MS_Phenyx = 1001209,
3897 
3898  /// mass type settings: The type of mass difference value to be considered by the search engine (monoisotopic or average).
3900 
3901  /// parent mass type mono: Mass type setting for parent mass was monoisotopic.
3903 
3904  /// parent mass type average: Mass type setting for parent mass was average isotopic.
3906 
3907  /// search result details: OBSOLETE: Scores and global result characteristics.
3909 
3910  /// prot:global FDR: Estimation of global false discovery rate of the proteins.
3912 
3913  /// Sequest:PeptideSp: The SEQUEST result 'Sp' in out file (peptide).
3915 
3916  /// Sequest:PeptideRankSp: The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'.
3918 
3919  /// Sequest:PeptideNumber: The SEQUEST result '#' in out file (peptide).
3921 
3922  /// Sequest:PeptideIdnumber: The SEQUEST result 'Id#' in out file (peptide).
3924 
3925  /// frag: y ion: Fragmentation information, type of product: y ion.
3926  MS_frag__y_ion = 1001220,
3927 
3928  /// fragmentation information: Fragmentation information like ion types.
3930 
3931  /// frag: b ion - H2O: Fragmentation information, type of product: b ion without water.
3933 
3934  /// frag: y ion - H2O: Fragmentation information, type of product: y ion without water.
3936 
3937  /// frag: b ion: Fragmentation information, type of product: b ion.
3938  MS_frag__b_ion = 1001224,
3939 
3940  /// product ion m/z: The m/z of the product ion.
3942 
3943  /// fragment ion m/z (product ion m/z): The m/z of the product ion.
3945 
3946  /// product ion intensity: The intensity of the product ion.
3948 
3949  /// fragment ion intensity (product ion intensity): The intensity of the product ion.
3951 
3952  /// product ion m/z error: The product ion m/z error.
3954 
3955  /// frag: x ion: Fragmentation information, type of product: x ion.
3956  MS_frag__x_ion = 1001228,
3957 
3958  /// frag: a ion: Fragmentation information, type of product: a ion.
3959  MS_frag__a_ion = 1001229,
3960 
3961  /// frag: z ion: Fragmentation information, type of product: z ion.
3962  MS_frag__z_ion = 1001230,
3963 
3964  /// frag: c ion: Fragmentation information, type of product: c ion.
3965  MS_frag__c_ion = 1001231,
3966 
3967  /// frag: b ion - NH3: Fragmentation information, type of product: b ion without ammonium ion.
3969 
3970  /// frag: y ion - NH3: Fragmentation information, type of product: y ion without ammonium ion.
3972 
3973  /// frag: a ion - H2O: Fragmentation information, type of product: a ion without water.
3975 
3976  /// frag: a ion - NH3: Fragmentation information, type of product: a ion without ammonium.
3978 
3979  /// frag: d ion: Fragmentation information, type of product: d ion.
3980  MS_frag__d_ion = 1001236,
3981 
3982  /// frag: v ion: Fragmentation information, type of product: v ion.
3983  MS_frag__v_ion = 1001237,
3984 
3985  /// frag: w ion: Fragmentation information, type of product: w ion.
3986  MS_frag__w_ion = 1001238,
3987 
3988  /// frag: immonium ion: Fragmentation information, type of product: immonium ion.
3990 
3991  /// non-identified ion: Non-identified ion.
3993 
3994  /// co-eluting ion: Co-eluting ion.
3996 
3997  /// Sequest out folder: Source file for this mzIdentML was a Sequest folder with its out files.
3999 
4000  /// Sequest summary: Source file for this mzIdentML was a Sequest summary page (proteins).
4002 
4003  /// PerSeptive PKS file:
4005 
4006  /// Sciex API III file:
4008 
4009  /// Bruker XML file: Bruker data exchange xml.
4011 
4012  /// search input details:
4014 
4015  /// local FDR: Result of quality estimation: the local FDR at the current position of a sorted list.
4016  MS_local_FDR = 1001250,
4017 
4018  /// Trypsin:
4019  MS_Trypsin = 1001251,
4020 
4021  /// DB source EBI:
4022  MS_DB_source_EBI = 1001252,
4023 
4024  /// DB source NCBI:
4026 
4027  /// DB source UniProt:
4029 
4030  /// fragment mass type average: Mass type setting for fragment mass was average isotopic.
4032 
4033  /// fragment mass type mono: Mass type setting for fragment mass was monoisotopic.
4035 
4036  /// param: v ion:
4037  MS_param__v_ion = 1001257,
4038 
4039  /// param: d ion:
4040  MS_param__d_ion = 1001258,
4041 
4042  /// param: immonium ion:
4044 
4045  /// param: w ion:
4046  MS_param__w_ion = 1001260,
4047 
4048  /// param: x ion:
4049  MS_param__x_ion = 1001261,
4050 
4051  /// param: y ion:
4052  MS_param__y_ion = 1001262,
4053 
4054  /// param: z ion:
4055  MS_param__z_ion = 1001263,
4056 
4057  /// role type: Role of a Person or Organization.
4058  MS_role_type = 1001266,
4059 
4060  /// software vendor:
4062 
4063  /// programmer:
4064  MS_programmer = 1001268,
4065 
4066  /// instrument vendor:
4068 
4069  /// lab personnel:
4070  MS_lab_personnel = 1001270,
4071 
4072  /// researcher:
4073  MS_researcher = 1001271,
4074 
4075  /// (?<=R)(?!P):
4076  MS_____R____P_ = 1001272,
4077 
4078  /// (?=[BD]):
4079  MS_____BD__ = 1001273,
4080 
4081  /// (?=[DE]):
4082  MS_____DE__ = 1001274,
4083 
4084  /// ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.
4086 
4087  /// ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.
4089 
4090  /// decoy DB accession regexp: Specify the regular expression for decoy accession numbers.
4092 
4093  /// decoy DB derived from: The name of the database, the search database was derived from.
4095 
4096  /// database IPI_mouse:
4098 
4099  /// database IPI_rat:
4101 
4102  /// database IPI_zebrafish:
4104 
4105  /// database IPI_chicken:
4107 
4108  /// database IPI_cow:
4110 
4111  /// database IPI_arabidopsis:
4113 
4114  /// decoy DB from nr:
4116 
4117  /// decoy DB from IPI_rat:
4119 
4120  /// decoy DB from IPI_mouse:
4122 
4123  /// decoy DB from IPI_arabidopsis:
4125 
4126  /// decoy DB from EST:
4128 
4129  /// decoy DB from IPI_zebrafish:
4131 
4132  /// decoy DB from SwissProt:
4134 
4135  /// decoy DB from IPI_chicken:
4137 
4138  /// decoy DB from IPI_cow:
4140 
4141  /// decoy DB from IPI_human:
4143 
4144  /// protein rank: The rank of the protein in a list sorted by the search engine.
4145  MS_protein_rank = 1001301,
4146 
4147  /// search engine specific input parameter: This branch contains search engine specific input parameters (e.g. Mascot Sig Threshold).
4149 
4150  /// Arg-C: Endoproteinase Arg-C.
4151  MS_Arg_C = 1001303,
4152 
4153  /// Clostripain (Arg-C): Endoproteinase Arg-C.
4155 
4156  /// Asp-N:
4157  MS_Asp_N = 1001304,
4158 
4159  /// Asp-N_ambic:
4160  MS_Asp_N_ambic = 1001305,
4161 
4162  /// Chymotrypsin:
4163  MS_Chymotrypsin = 1001306,
4164 
4165  /// CNBr: Cyanogen bromide.
4166  MS_CNBr = 1001307,
4167 
4168  /// Formic_acid:
4169  MS_Formic_acid = 1001308,
4170 
4171  /// Lys-C:
4172  MS_Lys_C = 1001309,
4173 
4174  /// Lys-C/P:
4175  MS_Lys_C_P = 1001310,
4176 
4177  /// PepsinA:
4178  MS_PepsinA = 1001311,
4179 
4180  /// TrypChymo:
4181  MS_TrypChymo = 1001312,
4182 
4183  /// Trypsin/P:
4184  MS_Trypsin_P = 1001313,
4185 
4186  /// V8-DE:
4187  MS_V8_DE = 1001314,
4188 
4189  /// V8-E:
4190  MS_V8_E = 1001315,
4191 
4192  /// Mascot:SigThreshold:
4194 
4195  /// Mascot:MaxProteinHits:
4197 
4198  /// Mascot:ProteinScoringMethod:
4200 
4201  /// Mascot:MinMSMSThreshold:
4203 
4204  /// Mascot:ShowHomologousProteinsWithSamePeptides:
4206 
4207  /// Mascot:ShowHomologousProteinsWithSubsetOfPeptides:
4209 
4210  /// Mascot:RequireBoldRed:
4212 
4213  /// Mascot:UseUnigeneClustering:
4215 
4216  /// Mascot:IncludeErrorTolerantMatches:
4218 
4219  /// Mascot:ShowDecoyMatches:
4221 
4222  /// add_others:
4224 
4225  /// OMSSA:evalue: OMSSA E-value.
4226  MS_OMSSA_evalue = 1001328,
4227 
4228  /// OMSSA:pvalue: OMSSA p-value.
4229  MS_OMSSA_pvalue = 1001329,
4230 
4231  /// X!Tandem:expect: The X!Tandem expectation value.
4233 
4234  /// X!Tandem:hyperscore: The X!Tandem hyperscore.
4236 
4237  /// (?<=[FYWL])(?!P):
4239 
4240  /// (?<=M):
4241  MS_____M_ = 1001333,
4242 
4243  /// ((?<=D))|((?=D)):
4245 
4246  /// (?<=K)(?!P):
4247  MS_____K____P_ = 1001335,
4248 
4249  /// (?<=K):
4250  MS_____K_ = 1001336,
4251 
4252  /// (?<=[FL]):
4253  MS______FL__ = 1001337,
4254 
4255  /// (?<=[FYWLKR])(?!P):
4257 
4258  /// (?<=[KR]):
4259  MS______KR__ = 1001339,
4260 
4261  /// (?<=[BDEZ])(?!P):
4263 
4264  /// (?<=[EZ])(?!P):
4266 
4267  /// database sequence details: Details about a single database sequence.
4269 
4270  /// NA sequence: The sequence is a nucleic acid sequence.
4271  MS_NA_sequence = 1001343,
4272 
4273  /// AA sequence: The sequence is a amino acid sequence.
4274  MS_AA_sequence = 1001344,
4275 
4276  /// mass table source: Children of this term specify the source of the mass table used.
4278 
4279  /// AAIndex mass table: The masses used in the mass table are taken from AAIndex.
4281 
4282  /// database file formats: The children of this term define file formats of the sequence database used.
4284 
4285  /// FASTA format: The sequence database was stored in the FASTA format.
4286  MS_FASTA_format = 1001348,
4287 
4288  /// ASN.1: The sequence database was stored in the ASN.1 format.
4289  MS_ASN_1 = 1001349,
4290 
4291  /// NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.
4292  MS_NCBI___p_ = 1001350,
4293 
4294  /// clustal aln: ClustalW ALN (multiple alignment) format.
4295  MS_clustal_aln = 1001351,
4296 
4297  /// embl em: EMBL entry format.
4298  MS_embl_em = 1001352,
4299 
4300  /// NBRF PIR: The NBRF PIR was used as format.
4301  MS_NBRF_PIR = 1001353,
4302 
4303  /// mass table options: Root node for options for the mass table used.
4305 
4306  /// peptide descriptions: Descriptions of peptides.
4308 
4309  /// spectrum descriptions: Descriptions of the input spectra.
4311 
4312  /// spectrum quality descriptions: Description of the quality of the input spectrum.
4314 
4315  /// msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.
4317 
4318  /// ambiguous residues: Children of this term describe abiguous residues.
4320 
4321  /// alternate single letter codes: List of standard residue one letter codes which are used to replace a non-standard.
4323 
4324  /// alternate mass: List of masses a non-standard letter code is replaced with.
4326 
4327  /// number of unmatched peaks: The number of unmatched peaks.
4329 
4330  /// peptide unique to one protein:
4332 
4333  /// pep:global FDR: Estimation of global false discovery rate of the peptides.
4335 
4336  /// frag: internal yb ion:
4338 
4339  /// frag: internal ya ion:
4341 
4342  /// frag: z+1 ion:
4343  MS_frag__z_1_ion = 1001367,
4344 
4345  /// frag: z+2 ion:
4346  MS_frag__z_2_ion = 1001368,
4347 
4348  /// text file: Simple text file of \"m/z [intensity]\" values for a PMF (or single MS-MS) search.
4349  MS_text_file = 1001369,
4350 
4351  /// Mascot:homology threshold: The Mascot result 'homology threshold'.
4353 
4354  /// Mascot:identity threshold: The Mascot result 'identity threshold'.
4356 
4357  /// Sequest:Sequences:
4359 
4360  /// Sequest:TIC:
4361  MS_Sequest_TIC = 1001373,
4362 
4363  /// Sequest:Sum:
4364  MS_Sequest_Sum = 1001374,
4365 
4366  /// Phenyx:Instrument Type:
4368 
4369  /// Phenyx:Scoring Model:
4371 
4372  /// Phenyx:Default Parent Charge:
4374 
4375  /// Phenyx:Trust Parent Charge:
4377 
4378  /// Phenyx:Turbo:
4379  MS_Phenyx_Turbo = 1001379,
4380 
4381  /// Phenyx:Turbo:ErrorTol:
4383 
4384  /// Phenyx:Turbo:Coverage:
4386 
4387  /// Phenyx:Turbo:Series:
4389 
4390  /// Phenyx:MinPepLength:
4392 
4393  /// Phenyx:MinPepzscore:
4395 
4396  /// Phenyx:MaxPepPvalue:
4398 
4399  /// Phenyx:AC Score:
4401 
4402  /// Phenyx:Conflict Resolution:
4404 
4405  /// Phenyx:AC:
4406  MS_Phenyx_AC = 1001388,
4407 
4408  /// Phenyx:ID:
4409  MS_Phenyx_ID = 1001389,
4410 
4411  /// Phenyx:Score:
4412  MS_Phenyx_Score = 1001390,
4413 
4414  /// Phenyx:Peptides1: First number of phenyx result \"#Peptides\".
4416 
4417  /// Phenyx:Peptides2: Second number of phenyx result \"#Peptides\".
4419 
4420  /// Phenyx:Auto:
4421  MS_Phenyx_Auto = 1001393,
4422 
4423  /// Phenyx:User:
4424  MS_Phenyx_User = 1001394,
4425 
4426  /// Phenyx:Pepzscore:
4428 
4429  /// Phenyx:PepPvalue:
4431 
4432  /// Phenyx:NumberOfMC:
4434 
4435  /// Phenyx:Modif:
4436  MS_Phenyx_Modif = 1001398,
4437 
4438  /// OMSSA csv file: Source file for this mzIdentML was an OMSSA csv file.
4440 
4441  /// OMSSA xml file: Source file for this mzIdentML was an OMSSA xml file.
4443 
4444  /// X!Tandem xml file: Source file for this mzIdentML was an X!Tandem xml file.
4446 
4447  /// spectrum identification result details: This subsection describes terms which can describe details of spectrum identification results.
4449 
4450  /// param: internal yb ion:
4452 
4453  /// param: internal ya ion:
4455 
4456  /// param: z+1 ion:
4458 
4459  /// param: z+2 ion:
4461 
4462  /// translation start codons: The translation start codons used to translate the nucleotides to amino acids.
4464 
4465  /// search tolerance specification:
4467 
4468  /// search tolerance plus value:
4470 
4471  /// search tolerance minus value:
4473 
4474  /// MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file.
4476 
4477  /// MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file.
4479 
4480  /// spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE.
4482 
4483  /// SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.
4484  MS_SpectraST_dot = 1001417,
4485 
4486  /// SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks.
4488 
4489  /// SpectraST:discriminant score F: SpectraST spectrum score.
4491 
4492  /// SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up.
4494 
4495  /// pepXML file: Source file for this mzIdentML was a pepXML file.
4496  MS_pepXML_file = 1001421,
4497 
4498  /// protXML file: Source file for this mzIdentML was a protXML file.
4499  MS_protXML_file = 1001422,
4500 
4501  /// translation table description: A URL that describes the translation table used to translate the nucleotides to amino acids.
4503 
4504  /// ProteinExtractor:Methodname:
4506 
4507  /// ProteinExtractor:GenerateNonRedundant:
4509 
4510  /// ProteinExtractor:IncludeIdentified:
4512 
4513  /// ProteinExtractor:MaxNumberOfProteins:
4515 
4516  /// ProteinExtractor:MaxProteinMass:
4518 
4519  /// ProteinExtractor:MinNumberOfPeptides:
4521 
4522  /// ProteinExtractor:UseMascot:
4524 
4525  /// ProteinExtractor:MascotPeptideScoreThreshold:
4527 
4528  /// ProteinExtractor:MascotUniqueScore:
4530 
4531  /// ProteinExtractor:MascotUseIdentityScore:
4533 
4534  /// ProteinExtractor:MascotWeighting:
4536 
4537  /// ProteinExtractor:UseSequest:
4539 
4540  /// ProteinExtractor:SequestPeptideScoreThreshold:
4542 
4543  /// ProteinExtractor:SequestUniqueScore:
4545 
4546  /// ProteinExtractor:SequestWeighting:
4548 
4549  /// ProteinExtractor:UseProteinSolver:
4551 
4552  /// ProteinExtractor:ProteinSolverPeptideScoreThreshold:
4554 
4555  /// ProteinExtractor:ProteinSolverUniqueScore:
4557 
4558  /// ProteinExtractor:ProteinSolverWeighting:
4560 
4561  /// ProteinExtractor:UsePhenyx:
4563 
4564  /// ProteinExtractor:PhenyxPeptideScoreThreshold:
4566 
4567  /// ProteinExtractor:PhenyxUniqueScore:
4569 
4570  /// ProteinExtractor:PhenyxWeighting:
4572 
4573  /// prot:FDR threshold: False-discovery rate threshold for proteins.
4575 
4576  /// pep:FDR threshold: False-discovery rate threshold for peptides.
4578 
4579  /// OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.
4581 
4582  /// decoy DB details: Details of decoy generation and database structure.
4584 
4585  /// decoy DB generation algorithm: Name of algorithm used for decoy generation.
4587 
4588  /// decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order.
4590 
4591  /// DB composition only decoy: Decoy database composition: database contains only decoy entries.
4593 
4594  /// quality estimation with implicite decoy sequences: Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy).
4596 
4597  /// acquisition software: Acquisition software.
4599 
4600  /// analysis software: Analysis software.
4602 
4603  /// data processing software: Conversion software.
4605 
4606  /// spectrum generation information: Vocabularies describing the spectrum generation information.
4608 
4609  /// file format: Format of data files.
4610  MS_file_format = 1001459,
4611 
4612  /// unknown modification: This term should be given if the modification was unknown.
4614 
4615  /// greylag: Greylag identification software, see greylag.org.
4616  MS_greylag = 1001461,
4617 
4618  /// PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format.
4619  MS_PEFF_format = 1001462,
4620 
4621  /// Phenyx XML format:
4623 
4624  /// DTASelect file:
4626 
4627  /// MS2 file: MS2 file.
4628  MS_MS2_file = 1001466,
4629 
4630  /// taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens.
4632 
4633  /// taxonomy: common name: This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4635 
4636  /// taxonomy: scientific name: This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4638 
4639  /// taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4641 
4642  /// peptide modification details: The children of this term can be used to describe modifications.
4644 
4645  /// selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.
4647 
4648  /// SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.
4650 
4651  /// selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.
4653 
4654  /// SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.
4656 
4657  /// consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.
4659 
4660  /// CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.
4662 
4663  /// OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.
4664  MS_OMSSA = 1001475,
4665 
4666  /// X!Tandem: X!Tandem was used to analyze the spectra.
4667  MS_X_Tandem = 1001476,
4668 
4669  /// SpectraST: SpectraST was used to analyze the spectra.
4670  MS_SpectraST = 1001477,
4671 
4672  /// Mascot Parser: Mascot Parser was used to analyze the spectra.
4673  MS_Mascot_Parser = 1001478,
4674 
4675  /// null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte.
4677 
4678  /// AB SCIEX TOF/TOF nativeID format: jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger.
4680 
4681  /// AB SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database.
4683 
4684  /// TOF/TOF 5800: AB SCIEX or Applied Biosystems|MDS Analytical Technologies AB SCIEX TOF/TOF 5800 Analyzer.
4685  MS_TOF_TOF_5800 = 1001482,
4686 
4687  /// AB SCIEX TOF/TOF Series Explorer Software: AB SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis.
4689 
4690  /// intensity normalization: Normalization of data point intensities.
4692 
4693  /// m/z calibration: Calibration of data point m/z positions.
4695 
4696  /// data filtering: Filtering out part of the data.
4698 
4699  /// ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker's ProteinScape.
4701 
4702  /// Mascot Distiller: Mascot Distiller.
4704 
4705  /// Mascot Integra: Mascot Integra.
4707 
4708  /// Percolator: Percolator.
4709  MS_Percolator = 1001490,
4710 
4711  /// percolator:Q value: Percolator:Q value.
4713 
4714  /// percolator:score: Percolator:score.
4716 
4717  /// percolator:PEP: Posterior error probability.
4719 
4720  /// no threshold: In case no threshold was used.
4721  MS_no_threshold = 1001494,
4722 
4723  /// ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape database.
4725 
4726  /// ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database.
4728 
4729  /// ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.
4731 
4732  /// Profound:z value: The Profound z value.
4734 
4735  /// Profound:Cluster: The Profound cluster score.
4737 
4738  /// Profound:ClusterRank: The Profound cluster rank.
4740 
4741  /// MSFit:Mowse score: The MSFit Mowse score.
4743 
4744  /// Sonar:Score: The Sonar score.
4745  MS_Sonar_Score = 1001502,
4746 
4747  /// ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.
4749 
4750  /// ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.
4752 
4753  /// ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape.
4755 
4756  /// ProteinScape:SequestMetaScore: The Sequest meta score calculated by ProteinScape from the original Sequest scores.
4758 
4759  /// ProteinExtractor:Score: The score calculated by ProteinExtractor.
4761 
4762  /// Agilent MassHunter nativeID format: scanId=xsd:nonNegativeInteger.
4764 
4765  /// Agilent MassHunter file: A data file found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer.
4767 
4768  /// TSQ Vantage: TSQ Vantage.
4769  MS_TSQ_Vantage = 1001510,
4770 
4771  /// Sequence database filter types: Filter types which are used to filter a sequence database.
4773 
4774  /// Sequence database filters: Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search.
4776 
4777  /// DB sequence filter pattern:
4779 
4780  /// DB accession filter string:
4782 
4783  /// frag: c ion - H2O: Fragmentation information, type of product: c ion without water.
4785 
4786  /// frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.
4788 
4789  /// frag: z ion - H2O: Fragmentation information, type of product: z ion without water.
4791 
4792  /// frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.
4794 
4795  /// frag: x ion - H2O: Fragmentation information, type of product: x ion without water.
4797 
4798  /// frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.
4800 
4801  /// frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water.
4803 
4804  /// frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia.
4806 
4807  /// frag: precursor ion: Fragmentation information, type of product: precursor ion.
4809 
4810  /// fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
4812 
4813  /// precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
4815 
4816  /// spectrum from database integer nativeID format: databasekey=xsd:long.
4818 
4819  /// Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.
4821 
4822  /// Mascot query number: query=xsd:nonNegativeInteger.
4824 
4825  /// spectra data details: Child-terms contain information to map the results back to spectra.
4827 
4828  /// mzML unique identifier: mzMLid=xsd:IDREF.
4830 
4831  /// spectrum from ProteinScape database nativeID format: databasekey=xsd:long.
4833 
4834  /// spectrum from database string nativeID format: databasekey=xsd:string.
4836 
4837  /// Bruker Daltonics esquire series:
4839 
4840  /// Bruker Daltonics flex series:
4842 
4843  /// Bruker Daltonics BioTOF series:
4845 
4846  /// Bruker Daltonics micrOTOF series:
4848 
4849  /// BioTOF: Bruker Daltonics' BioTOF: ESI TOF.
4850  MS_BioTOF = 1001537,
4851 
4852  /// BioTOF III: Bruker Daltonics' BioTOF III: ESI TOF.
4853  MS_BioTOF_III = 1001538,
4854 
4855  /// UltroTOF-Q: Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional).
4856  MS_UltroTOF_Q = 1001539,
4857 
4858  /// micrOTOF II: Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI.
4859  MS_micrOTOF_II = 1001540,
4860 
4861  /// maXis: Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI.
4862  MS_maXis = 1001541,
4863 
4864  /// amaZon ETD: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR.
4865  MS_amaZon_ETD = 1001542,
4866 
4867  /// microflex LRF: Bruker Daltonics' microflex LRF: MALDI TOF.
4868  MS_microflex_LRF = 1001543,
4869 
4870  /// ultrafleXtreme: Bruker Daltonics' ultrafleXtreme: MALDI TOF.
4872 
4873  /// Bruker Daltonics amaZon series:
4875 
4876  /// amaZon X: Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
4877  MS_amaZon_X = 1001546,
4878 
4879  /// Bruker Daltonics maXis series:
4881 
4882  /// Bruker Daltonics solarix series: Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
4884 
4885  /// solariX: Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR.
4886  MS_solariX = 1001549,
4887 
4888  /// microflex II: Bruker Daltonics' microflex II: MALDI TOF.
4889  MS_microflex_II = 1001550,
4890 
4891  /// autoflex II TOF/TOF: Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF.
4893 
4894  /// autoflex III TOF/TOF smartbeam: Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF.
4896 
4897  /// autoflex: Bruker Daltonics' autoflex: MALDI TOF.
4898  MS_autoflex = 1001555,
4899 
4900  /// Bruker Daltonics apex series:
4902 
4903  /// Shimadzu Biotech software:
4905 
4906  /// MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.
4908 
4909  /// AB SCIEX TOF/TOF T2D nativeID format: file=xsd:IDREF.
4911 
4912  /// AB SCIEX TOF/TOF T2D file: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format.
4914 
4915  /// Scaffold: Scaffold analysis software, see www.proteomesoftware.com.
4916  MS_Scaffold = 1001561,
4917 
4918  /// Scaffold nativeID format: Scaffold native ID format.
4920 
4921  /// Sequest SQT: Source file for this mzIdentML was a Sequest SQT.
4922  MS_Sequest_SQT = 1001563,
4923 
4924  /// Discoverer MSF: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format.
4926 
4927  /// IdentityE XML: Source file for this mzIdentML was in Waters IdentityE XML format.
4928  MS_IdentityE_XML = 1001565,
4929 
4930  /// ProteinLynx XML: Source file for this mzIdentML was in Waters ProteinLynx XML format.
4932 
4933  /// SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format.
4935 
4936  /// Scaffold:Peptide Probability: Scaffold peptide probability score.
4938 
4939  /// IdentityE Score: Waters IdentityE peptide score.
4941 
4942  /// ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.
4944 
4945  /// ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.
4947 
4948  /// SpectrumMill:Score: Spectrum mill peptide score.
4950 
4951  /// SpectrumMill:SPI: SpectrumMill SPI score (%).
4953 
4954  /// report only spectra assigned to identified proteins: .
4956 
4957  /// Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted.
4959 
4960  /// Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted.
4962 
4963  /// Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for protein scoring.
4965 
4966  /// minimum number of enzymatic termini: Minimum number of enzymatic termini a pepide must have to be accepted.
4968 
4969  /// Scaffold:Protein Probability: Scaffold protein probability score.
4971 
4972  /// SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.
4974 
4975  /// FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.
4977 
4978  /// FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.
4980 
4981  /// XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data.
4982  MS_XCMS = 1001582,
4983 
4984  /// MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data.
4985  MS_MaxQuant = 1001583,
4986 
4987  /// combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS/MS (aka Peptide Fragment Fingerprint - PFF).
4989 
4990  /// MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra.
4991  MS_MyriMatch = 1001585,
4992 
4993  /// DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.
4994  MS_DirecTag = 1001586,
4995 
4996  /// TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.
4997  MS_TagRecon = 1001587,
4998 
4999  /// Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra.
5000  MS_Pepitome = 1001588,
5001 
5002  /// MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5003  MS_MyriMatch_MVH = 1001589,
5004 
5005  /// Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5007 
5008  /// TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5010 
5011  /// MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5013 
5014  /// Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5016 
5017  /// TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5019 
5020  /// anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-set proteins.
5022 
5023  /// family member protein: A protein with significant homology to another protein, but some distinguishing peptide matches.
5025 
5026  /// group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relationship OR ortholog protein.
5028 
5029  /// sequence same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences.
5031 
5032  /// spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra.
5034 
5035  /// sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches.
5037 
5038  /// spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches.
5040 
5041  /// sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins.
5043 
5044  /// spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins.
5046 
5047  /// Protein Inference Confidence Category: Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable).
5049 
5050  /// ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files.
5052 
5053  /// ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (Sequest Result Format) file.
5055 
5056  /// ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc).
5058 
5059  /// ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any).
5061 
5062  /// ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.
5064 
5065  /// ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS).
5067 
5068  /// ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion.
5070 
5071  /// ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion.
5073 
5074  /// ProteomeDiscoverer:Minimum Peak Count: Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow.
5076 
5077  /// ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS/MS=MS2 ... MS10).
5079 
5080  /// ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).
5082 
5083  /// ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3).
5085 
5086  /// ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.
5088 
5089  /// ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM)).
5091 
5092  /// ProteomeDiscoverer:Total Intensity Threshold: Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value.
5094 
5095  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header.
5097 
5098  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of the precursor ions, if it is not defined in the scan header.
5100 
5101  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header.
5103 
5104  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header.
5106 
5107  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of the ions monitored if it is not included in the scan header.
5109 
5110  /// ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.
5112 
5113  /// ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors.
5115 
5116  /// ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral loss.
5118 
5119  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed.
5121 
5122  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss peaks are removed from ETD and ECD spectra.
5124 
5125  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra.
5127 
5128  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum.
5130 
5131  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact peaks from the MS/MS input spectra are removed.
5133 
5134  /// ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type.
5136 
5137  /// ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from different MS order scans can be grouped together.
5139 
5140  /// ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be grouped must reside to be considered the same species.
5142 
5143  /// ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis.
5145 
5146  /// ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution of multiply charged data.
5148 
5149  /// ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.
5151 
5152  /// ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of multiply charged data.
5154 
5155  /// ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.
5157 
5158  /// ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum.
5160 
5161  /// ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted).
5163 
5164  /// ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be considered valid.
5166 
5167  /// ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.
5169 
5170  /// ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out.
5172 
5173  /// ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out.
5175 
5176  /// ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with scores above the threshold score are retained rather than filtered out.
5178 
5179  /// ProteomeDiscoverer:Dynamic Modifications: Determine dynamic post-translational modifications (PTMs).
5181 
5182  /// ProteomeDiscoverer:Static Modifications: Static Modification to all occurrences of a named amino acid.
5184 
5185  /// ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application searches an additional decoy database.
5187 
5188  /// ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.
5190 
5191  /// ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in MByte.
5193 
5194  /// ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server.
5196 
5197  /// ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the Mascot search.
5199 
5200  /// ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search.
5202 
5203  /// ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.
5205 
5206  /// ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between attempts to submit a search in seconds.
5208 
5209  /// ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.
5211 
5212  /// ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or mmu.
5214 
5215  /// Mascot:Instrument: Type of instrument used to acquire the data in the raw file.
5217 
5218  /// ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider during the digest.
5220 
5221  /// ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptide must exceed in order to be reported.
5223 
5224  /// ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to be the same species.
5226 
5227  /// ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that each protein must exceed in order to be reported.
5229 
5230  /// ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server).
5232 
5233  /// ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report.
5235 
5236  /// ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence.
5238 
5239  /// ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence.
5241 
5242  /// ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of species.
5244 
5245  /// ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.
5247 
5248  /// Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.
5250 
5251  /// ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported.
5253 
5254  /// ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability score for every peptide match.
5256 
5257  /// ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used during the search.
5259 
5260  /// ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained.
5262 
5263  /// ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modifications that a single peptide can have.
5265 
5266  /// ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance.
5268 
5269  /// ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched and scored per spectrum.
5271 
5272  /// ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum.
5274 
5275  /// ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single identified peptide can be associated with during protein assembly.
5277 
5278  /// ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used during the search.
5280 
5281  /// ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used during the search.
5283 
5284  /// ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used during the search.
5286 
5287  /// ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score.
5289 
5290  /// ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report.
5292 
5293  /// ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer application searches against a decoy database.
5295 
5296  /// ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments.
5298 
5299  /// ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for spectrum matching.
5301 
5302  /// ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for spectrum matching.
5304 
5305  /// ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for spectrum matching.
5307 
5308  /// ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for spectrum matching.
5310 
5311  /// ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative factor.
5313 
5314  /// ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative factor.
5316 
5317  /// ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative factor.
5319 
5320  /// ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative factor.
5322 
5323  /// ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative factor.
5325 
5326  /// ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative factor.
5328 
5329  /// ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative factor.
5331 
5332  /// ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative factor.
5334 
5335  /// ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative factor.
5337 
5338  /// ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must exceed in order to be reported.
5340 
5341  /// ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more than one peak is found inside the integration window.
5343 
5344  /// ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge window that enables one to look for the reporter peaks.
5346 
5347  /// ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically labeled quantitation.
5349 
5350  /// ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta, mgf or mzData).
5352 
5353  /// ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported data.
5355 
5356  /// ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications search.
5358 
5359  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr parameter for charge = 1.
5361 
5362  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr parameter for charge = 2.
5364 
5365  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr parameter for charge = 3.
5367 
5368  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr parameter for charge >= 4.
5370 
5371  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr parameter for charge = 1.
5373 
5374  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr parameter for charge = 2.
5376 
5377  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr parameter for charge = 3.
5379 
5380  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr parameter for charge >= 4.
5382 
5383  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for charge = 1.
5385 
5386  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for charge = 2.
5388 
5389  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for charge = 3.
5391 
5392  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for charge >= 4.
5394 
5395  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter for charge = 1.
5397 
5398  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter for charge = 2.
5400 
5401  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter for charge = 3.
5403 
5404  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter for charge >= 4.
5406 
5407  /// ProteomeDiscoverer:1. Dynamic Modification: Determine 1st dynamic post-translational modifications (PTMs).
5409 
5410  /// ProteomeDiscoverer:2. Dynamic Modification: Determine 2nd dynamic post-translational modifications (PTMs).
5412 
5413  /// ProteomeDiscoverer:3. Dynamic Modification: Determine 3rd dynamic post-translational modifications (PTMs).
5415 
5416  /// ProteomeDiscoverer:4. Dynamic Modification: Determine 4th dynamic post-translational modifications (PTMs).
5418 
5419  /// ProteomeDiscoverer:Static Modification for X: Static Modification for X.
5421 
5422  /// ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contribute to analysis.
5424 
5425  /// ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to protein probability.
5427 
5428  /// ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability.
5430 
5431  /// ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.
5433 
5434  /// ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.
5436 
5437  /// ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.
5439 
5440  /// ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.
5442 
5443  /// ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.
5445 
5446  /// ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein ids (sum of probabilities).
5448 
5449  /// ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).
5451 
5452  /// ProteomeDiscoverer:Reference Database: Full path database name.
5454 
5455  /// ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides.
5457 
5458  /// ProteomeDiscoverer:Source file extension: File type (if not pepXML).
5460 
5461  /// ProteomeDiscoverer:Source Files: Input pepXML files.
5463 
5464  /// ProteomeDiscoverer:Source Files old: Input pepXML files (old).
5466 
5467  /// ProteomeDiscoverer:WinCyg reference database: Windows full path for database.
5469 
5470  /// ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.
5472 
5473  /// LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.
5475 
5476  /// ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching.
5478 
5479  /// ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching.
5481 
5482  /// ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching.
5484 
5485  /// ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching.
5487 
5488  /// ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching.
5490 
5491  /// ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching.
5493 
5494  /// ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching.
5496 
5497  /// ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching.
5499 
5500  /// ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching.
5502 
5503  /// ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor reevaluation.
5505 
5506  /// ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are removed (in FT mode only).
5508 
5509  /// ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches.
5511 
5512  /// contact phone number: Phone number of the contact person or organization.
5514 
5515  /// contact fax number: Fax number for the contact person or organization.
5517 
5518  /// contact toll-free phone number: Toll-free phone number of the contact person or organization.
5520 
5521  /// Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either 'identity' or 'homology').
5523 
5524  /// Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering').
5526 
5527  /// Percolator:features: List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'.
5529 
5530  /// ACQUITY UPLC: Waters LC-system.
5531  MS_ACQUITY_UPLC = 1001761,
5532 
5533  /// ACQUITY UPLC H-Class: Waters LC-system.
5535 
5536  /// ACQUITY UPLC H-Class Bio: Waters LC-system.
5538 
5539  /// ACQUITY UPLC I-Class: Waters LC-system.
5541 
5542  /// ACQUITY UPLC Systems with 2D Technology: Waters LC-system.
5544 
5545  /// nanoACQUITY UPLC: Waters LC-system.
5547 
5548  /// nanoACQUITY UPLC System with Technology: Waters LC-system.
5550 
5551  /// nanoACQUITY UPLC with HDX Technology: Waters LC-system.
5553 
5554  /// TRIZAIC UPLC nanoTile: Waters LC-system.
5556 
5557  /// GCT Premier: Waters oa-ToF based.
5558  MS_GCT_Premier = 1001770,
5559 
5560  /// MALDI Synapt G2 HDMS: Waters oa-ToF based.
5562 
5563  /// MALDI Synapt G2 MS: Waters oa-ToF based.
5565 
5566  /// MALDI Synapt G2-S HDMS: Waters oa-ToF based.
5568 
5569  /// MALDI Synapt G2-S MS: Waters oa-ToF based.
5571 
5572  /// MALDI Synapt HDMS: Waters oa-ToF based.
5574 
5575  /// MALDI Synapt MS: Waters oa-ToF based.
5577 
5578  /// Synapt G2 HDMS: Waters oa-ToF based.
5580 
5581  /// Synapt G2 MS: Waters oa-ToF based.
5582  MS_Synapt_G2_MS = 1001778,
5583 
5584  /// Synapt G2-S HDMS: Waters oa-ToF based.
5586 
5587  /// Synapt G2-S MS: Waters oa-ToF based.
5589 
5590  /// Synapt HDMS: Waters oa-ToF based.
5591  MS_Synapt_HDMS = 1001781,
5592 
5593  /// Synapt MS: Waters oa-ToF based.
5594  MS_Synapt_MS = 1001782,
5595 
5596  /// Xevo G2 Q-Tof: Waters oa-ToF based.
5597  MS_Xevo_G2_Q_Tof = 1001783,
5598 
5599  /// Xevo G2 Tof: Waters oa-ToF based.
5600  MS_Xevo_G2_Tof = 1001784,
5601 
5602  /// Xevo Q-Tof: Waters oa-ToF based.
5603  MS_Xevo_Q_Tof = 1001785,
5604 
5605  /// 3100: Waters quadrupole based.
5606  MS_3100 = 1001786,
5607 
5608  /// Acquity SQD: Waters quadrupole based.
5609  MS_Acquity_SQD = 1001787,
5610 
5611  /// Acquity TQD: Waters quadrupole based.
5612  MS_Acquity_TQD = 1001788,
5613 
5614  /// Quattro micro GC: Waters quadrupole based.
5616 
5617  /// Xevo TQ MS: Waters quadrupole based.
5618  MS_Xevo_TQ_MS = 1001790,
5619 
5620  /// Xevo TQD: Waters quadrupole based.
5621  MS_Xevo_TQD = 1001791,
5622 
5623  /// Xevo TQ-S: Waters quadrupole based.
5624  MS_Xevo_TQ_S = 1001792,
5625 
5626  /// Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences.
5628 
5629  /// Empower: Waters software for liquid chromatography acquisition, processing, data analysis and data management.
5630  MS_Empower = 1001795,
5631 
5632  /// Unify: Waters software for liquid chromatography and mass spectrometry acquisition, processing, data analysis and data management.
5633  MS_Unify = 1001796,
5634 
5635  /// travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.
5637 
5638  /// TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.
5640 
5641  /// LECO software: LECO software for data acquisition and analysis.
5642  MS_LECO_software = 1001798,
5643 
5644  /// ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments.
5646 
5647  /// LECO instrument model: LECO instrument model.
5649 
5650  /// Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.
5651  MS_Pegasus_HRT = 1001801,
5652 
5653  /// Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.
5654  MS_Citius_HRT = 1001802,
5655 
5656  /// Pegasus: LECO GC time-of-flight mass spectrometer.
5657  MS_Pegasus = 1001803,
5658 
5659  /// TruTOF: LECO bench-top GC time-of-flight mass spectrometer.
5660  MS_TruTOF = 1001804,
5661 
5662  /// quantification datatype: The data type of the value reported in a QuantLayer for a feature, matchedfeature, peptide, protein, protein group.
5664 
5665  /// quantification object attribute: Attributes describing the details of an object relevant for reporting quantification workflows or values.
5667 
5668  /// StudyVariable attribute: Attribute describing a study variable.
5670 
5671  /// technical replicate: The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'.
5673 
5674  /// biological replicate: The study variable is 'biological replicate'. This means, the run was generated from another individuum or sample.
5676 
5677  /// experimental condition 'case': The experimental condition is 'case' in contrast to 'control'.
5679 
5680  /// experimental condition 'control': The experimental condition is 'control' in contrast to 'case'.
5682 
5683  /// experimental condition 'disease': The experimental condition is 'disease' in contrast to 'healthy'.
5685 
5686  /// experimental condition 'healthy': The experimental condition is 'healthy' in contrast to 'disease'.
5688 
5689  /// generic experimental condition: The experimental condition is given in the value of this term.
5691 
5692  /// time series, time point X: The experimental design followed a time series design. The time point of this run is given in the value of this term.
5694 
5695  /// dilution series, concentration X: The experimental design followed a dilution series design. The concentration of this run is given in the value of this term.
5697 
5698  /// RawFile attribute: Attribute describing a raw file.
5700 
5701  /// one sample run: The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free).
5703 
5704  /// two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labeling).
5706 
5707  /// three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).
5709 
5710  /// four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).
5712 
5713  /// eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).
5715 
5716  /// RawFilesGroup attribute: Attribute describing, how raw files build a raw file group.
5718 
5719  /// merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group.
5721 
5722  /// FeatureList attribute: Attribute describing a FeatureList.
5724 
5725  /// mass trace reporting: rectangles: The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given.
5727 
5728  /// mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1,MZ_1,RT_2,MZ_2,...,RT_i,MZ_i,...,RT_n,MZ_n), where the line (RT_n,MZ_n)->(RT_1,MZ_1) is implicite.
5730 
5731  /// Feature attribute: Attribute describing a Feature.
5733 
5734  /// SRM transition ID: SRM transition ID.
5736 
5737  /// Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow.
5739 
5740  /// SILACAnalyzer: Software for SILAC workflow.
5741  MS_SILACAnalyzer = 1001831,
5742 
5743  /// quantitation software comment / customizations: Quantitation software comment or any customizations to the default setup of the software.
5745 
5746  /// quantitation analysis summary: The overall workflow of this quantitation report.
5748 
5749  /// LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).
5751 
5752  /// SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).
5754 
5755  /// spectral counting quantitation analysis: Spectral counting workflow (number of identified MS/MS spectra as approximation of peptide / protein quant).
5757 
5758  /// iTRAQ quantitation analysis: Quantification analysis using the AB SCIEX iTRAQ isobaric labeling workflow, wherein 2-8 reporter ions are measured in MS/MS spectra near 114 m/z.
5760 
5761  /// SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quant. of precursor / fragment mass pair).
5763 
5764  /// metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens).
5766 
5767  /// LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.
5769 
5770  /// LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.
5772 
5773  /// peptide PSM count: The number of MS/MS spectra identified for this peptide in spectral counting.
5775 
5776  /// MS1 feature maximum intensity: Maximum intensity of MS1 feature.
5778 
5779  /// MS1 feature area: Area of MS1 feature.
5781 
5782  /// peak area: Area of MS1 peak (e.g. SILAC, 15N).
5784 
5785  /// isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N).
5787 
5788  /// reporter ion intensity: Intensity of MS/MS reporter ion (e.g. iTraq).
5790 
5791  /// simple ratio of two value: Simple ratio of two values (enumerator and denominator).
5793 
5794  /// sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quantification values.
5796 
5797  /// normalized peptide value: Normalized peptide value.
5799 
5800  /// protein value: sum of peptide values: Protein quantification value calculated as sum of peptide values.
5802 
5803  /// normalized protein value: Normalized protein value.
5805 
5806  /// max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis).
5808 
5809  /// ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).
5810  MS_ANOVA_p_value = 1001854,
5811 
5812  /// t-test p-value: P-value of t-Test of two groups.
5814 
5815  /// reporter ion raw value: Intensity (or area) of MS/MS reporter ion (e.g. iTraq).
5817 
5818  /// reporter ion normalized value: Normalized value of MS/MS reporter ion (e.g. iTraq).
5820 
5821  /// XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).
5822  MS_XIC_area = 1001858,
5823 
5824  /// normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM).
5826 
5827  /// protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide ratios.
5829 
5830  /// quantification data processing: Terms used to describe types of quantification data processing.
5832 
5833  /// normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting).
5835 
5836  /// quantile normalization, proteins: Normalization of protein values to approach the same distribution.
5838 
5839  /// quantile normalization, peptides: Normalization of peptide values to approach the same distribution.
5841 
5842  /// Progenesis automatic alignment: Automatic RT alignment of Progenesis software.
5844 
5845  /// Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors.
5847 
5848  /// Progenesis normalization: Normalization as performed by Progenesis LC-MS.
5850 
5851  /// q-value for peptides: Peptide identification confidence metric q-value.
5853 
5854  /// q-value for proteins: Protein identification confidence metric q-value.
5856 
5857  /// p-value for peptides: Peptide identification confidence metric p-value.
5859 
5860  /// p-value for proteins: Protein identification confidence metric p-value.
5862 
5863  /// E-value for peptides: Peptide identification confidence metric E-value.
5865 
5866  /// E-value for proteins: Protein identification confidence metric E-value.
5868 
5869  /// FDRScore: Quality measurement score.
5870  MS_FDRScore = 1001874,
5871 
5872  /// modification motif: The regular expression describing the sequence motif for a modification.
5874 
5875  /// modification probability: The a priori probability of a modification.
5877 
5878  /// ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instruments.
5880 
5881  /// MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition, processing, and analysis.
5883 
5884  /// offset voltage: The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation.
5886 
5887  /// in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum.
5889 
5890  /// mz5 file: mz5 file format, modeled after mzML.
5891  MS_mz5_file = 1001881,
5892 
5893  /// transition validation attribute: Attributes of the quality of a transition that affect its selection as appropriate.
5895 
5896  /// coefficient of variation: Variation of a set of signal measurements calculated as the standard deviation relative to the mean.
5898 
5899  /// signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal.
5901 
5902  /// command-line parameters: Parameters string passed to a command-line interface software application, omitting the executable name.
5904 
5905  /// SQID: Software for data analysis of peptides and proteins.
5906  MS_SQID = 1001886,
5907 
5908  /// SQID:score: The SQID result 'Score'.
5909  MS_SQID_score = 1001887,
5910 
5911  /// SQID:deltaScore: The SQID result 'deltaScore'.
5913 
5914  /// SQID:protein score: The SQID result 'protein score'.
5916 
5917  /// Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by Progenesis LC-MS.
5919 
5920  /// Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by Progenesis LC-MS.
5922 
5923  /// Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-MS.
5925 
5926  /// Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-MS.
5928 
5929  /// Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS.
5931 
5932  /// Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.
5934 
5935  /// Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS.
5937 
5938  /// MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant.
5940 
5941  /// MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.
5943 
5944  /// MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQuant.
5946 
5947  /// MaxQuant:sequence length: The data type sequence length produced by MaxQuant.
5949 
5950  /// MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.
5951  MS_MaxQuant_PEP = 1001901,
5952 
5953  /// MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.
5955 
5956  /// MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant.
5958 
5959  /// MaxQuant:MS/MS count: The data type MS/MS count produced by MaxQuant.
5961 
5962  /// emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.
5963  MS_emPAI_value = 1001905,
5964 
5965  /// APEX value: The APEX value of protein abundance, produced from the APEX software.
5966  MS_APEX_value = 1001906,
5967 
5968  /// retention time window width: The full width of a retention time window for a chromatographic peak.
5970 
5971  /// ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.
5972  MS_ISQ = 1001908,
5973 
5974  /// Velos Plus: Thermo Scientific second generation Velos.
5975  MS_Velos_Plus = 1001909,
5976 
5977  /// LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.
5979 
5980  /// Q Exactive: Thermo Scientific Q Exactive.
5981  MS_Q_Exactive = 1001911,
5982 
5983  /// PinPoint: Thermo Scientific PinPoint SRM analysis software.
5984  MS_PinPoint = 1001912,
5985 
5986  /// S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts.
5988 
5989  /// pymzML: Python module to interface mzML Data.
5990  MS_pymzML = 1001914,
5991 
5992  /// leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).
5994 
5995  /// proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).
5997 
5998  /// glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6000 
6001  /// staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6003 
6004  /// Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6006 
6007  /// 2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.
6009 
6010  /// ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.
6012 
6013  /// ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number.
6015 
6016  /// Digital Object Identifier (DOI): DOI unique identifier.
6018 
6019  /// external reference keyword: Free text attribute that can enrich the information about an entity.
6021 
6022  /// journal article keyword: Keyword present in a scientific publication.
6024 
6025  /// submitter keyword: Keyword assigned by the data submitter.
6027 
6028  /// curator keyword: Keyword assigned by a data curator.
6030 
6031  /// Tranche file hash: Hash assigned by the Tranche resource to an individual file.
6033 
6034  /// Tranche project hash: Hash assigned by the Tranche resource to a whole project.
6036 
6037  /// PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.
6039 
6040  /// PRIDE project URI: URI that allows the access to one project in the PRIDE database.
6042 
6043  /// source interface: The source interface.
6045 
6046  /// source interface model: The source interface model.
6048 
6049  /// source sprayer: The source sprayer.
6051 
6052  /// source sprayer type: The source sprayer type.
6054 
6055  /// source sprayer manufacturer: The source sprayer manufacturer.
6057 
6058  /// source sprayer model: The source sprayer model.
6060 
6061  /// sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.
6062  MS_sample_plate = 1001937,
6063 
6064  /// sample plate type: The sample plate type.
6066 
6067  /// stainless steel plate: Stainless steel plate.
6069 
6070  /// coated glass plate: Coated glass plate.
6072 
6073  /// electrospray supply type: Whether the sprayer is fed or is loaded with sample once.
6075 
6076  /// static supply electrospray: The sprayer is loaded with sample once.
6078 
6079  /// fed supply electrospray: The sprayer is continuously fed with sample.
6081 
6082  /// Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.
6084 
6085  /// CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.
6087 
6088  /// Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.
6089  MS_Pegasus_4D = 1001945,
6090 
6091  /// PEAKS Studio: PEAKS Studio software for data analysis.
6092  MS_PEAKS_Studio = 1001946,
6093 
6094  /// PEAKS Online: PEAKS Online software for high throughput data analysis.
6095  MS_PEAKS_Online = 1001947,
6096 
6097  /// PEAKS Node: PEAKS Node software for high throughput data analysis.
6098  MS_PEAKS_Node = 1001948,
6099 
6100  /// BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.
6101  MS_BSI_software = 1001949,
6102 
6103  /// PEAKS:peptideScore: The PEAKS peptide '-10lgP Score'.
6105 
6106  /// PEAKS:proteinScore: The PEAKS protein '-10lgP Score'.
6108 
6109  /// ZCore:probScore: The ZCore probability score.
6111 
6112  /// source interface manufacturer: The source interface manufacturer.
6114 
6115  /// acquisition parameter: Parameters used in the mass spectrometry acquisition.
6117 
6118  /// no cleavage: No cleavage.
6119  MS_no_cleavage = 1001955,
6120 
6121  /// unspecific cleavage: Unspecific cleavage.
6123 
6124  /// (?<=[ALIV])(?!P):
6126 
6127  /// (?<=[HKR]P)(?!P):
6129 
6130  /// (?<=[^E]E):
6131  MS_______E_E_ = 1001959,
6132 
6133  /// (?<=W):
6134  MS_____W_ = 1001960,
6135 
6136  /// peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a peptide ion.
6138 
6139  /// Mascot:C13 counts: C13 peaks to use in peak detection.
6141 
6142  /// ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.
6144 
6145  /// ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.
6147 
6148  /// ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.
6150 
6151  /// product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry.
6153 
6154  /// product ion drift time: The ion drift time of an MS2 product ion.
6156 
6157  /// PTM localization score: A score that assign confidence to the localization of an amino acid modification on a peptide sequence.
6159 
6160  /// ProteomeDiscoverer:phosphoRS score: Peptide score based on the cumulative binomial probability that the observed match is a random event.
6162 
6163  /// ProteomeDiscoverer:phosphoRS sequence probability: Probability that the respective isoform is correct.
6165 
6166  /// ProteomeDiscoverer:phosphoRS site probability: Estimate of the probability that the respective site is truly phosphorylated.
6168 
6169  /// PTM scoring algorithm version: Version of the post-translational modification scoring algorithm.
6171 
6172  /// DeBunker: DeBunker software.
6173  MS_DeBunker = 1001973,
6174 
6175  /// DeBunker:score: Score specific to DeBunker.
6177 
6178  /// delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.
6179  MS_delta_m_z = 1001975,
6180 
6181  /// m/z difference (delta m/z): The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.
6183 
6184  /// delta M: The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.
6185  MS_delta_M = 1001976,
6186 
6187  /// mass difference (delta M): The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.
6189 
6190  /// MSQuant: MSQuant software.
6191  MS_MSQuant = 1001977,
6192 
6193  /// MSQuant:PTM-score: The PTM score from MSQuant software.
6195 
6196  /// MaxQuant:PTM Score: The PTM score from MaxQuant software.
6198 
6199  /// MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software.
6201 
6202  /// MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.
6204 
6205  /// MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant software.
6207 
6208  /// MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest).
6210 
6211  /// Ascore: Ascore software.
6212  MS_Ascore = 1001984,
6213 
6214  /// Ascore:Ascore: The Ascore score value from Ascore software.
6215  MS_Ascore_Ascore = 1001985,
6216 
6217  /// H-Score: H-Score for peptide phosphorylation site location.
6218  MS_H_Score = 1001986,
6219 
6220  /// vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method.
6222 
6223  /// crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method.
6225 
6226  /// fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method.
6228 
6229  /// overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method and the fast-evaporation method.
6231 
6232  /// sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.
6234 
6235  /// spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.
6237 
6238  /// quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling.
6240 
6241  /// top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'.
6243 
6244  /// convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures.
6246 
6247  /// median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of segments.
6249 
6250  /// wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transform.
6252 
6253  /// sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum.
6255 
6256  /// SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured spectrum.
6258 
6259  /// area normalization: Normalization of areas below the curves.
6261 
6262  /// LIFT: A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID.
6263  MS_LIFT = 1002000,
6264 
6265  /// MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.
6267 
6268  /// MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.
6270 
6271  /// MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.
6273 
6274  /// MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation.
6276 
6277  /// iRT retention time normalization standard: A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys.
6279 
6280  /// SRM transition type: The type of the transitions, e.g. target or decoy.
6282 
6283  /// MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy.
6285 
6286  /// target SRM transition: A transition used to target a specific compound that may be in the sample.
6288 
6289  /// target MRM transition (target SRM transition): A transition used to target a specific compound that may be in the sample.
6291 
6292  /// decoy SRM transition: A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.
6294 
6295  /// decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.
6297 
6298  /// isobaric label quantitation analysis: Quantitation analysis using an isobaric labeling workflow.
6300 
6301  /// TMT quantitation analysis: Quantitation analysis using the Thermo Fisher tandem mass tag (TMT) labeling workflow.
6303 
6304  /// desorption electrospray ionization: Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.
6306 
6307  /// DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.
6309 
6310  /// Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score).
6312 
6313  /// collision energy ramp start: Collision energy at the start of the collision energy ramp.
6315 
6316  /// collision energy ramp end: Collision energy at the end of the collision energy ramp.
6318 
6319  /// spectral count peptide level quantitation: Spectral count peptide level quantitation.
6321 
6322  /// spectral count protein level quantitation: Spectral count protein level quantitation.
6324 
6325  /// spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation.
6327 
6328  /// MS1 label-based analysis: MS1 label-based analysis.
6330 
6331  /// label-free raw feature quantitation: Label-free raw feature quantitation.
6333 
6334  /// label-free peptide level quantitation: Label-free peptide level quantitation.
6336 
6337  /// label-free protein level quantitation: Label-free protein level quantitation.
6339 
6340  /// label-free proteingroup level quantitation: Label-free proteingroup level quantitation.
6342 
6343  /// MS2 tag-based analysis: MS2 tag-based analysis.
6345 
6346  /// MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.
6348 
6349  /// MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.
6351 
6352  /// MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.
6354 
6355  /// MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.
6357 
6358  /// nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion).
6360 
6361  /// original nucleic acid sequence: Original nucleic acid sequence before a nucleic acid base modification.
6363 
6364  /// modified nucleic acid sequence: Modified nucleic acid sequence after a nucleic acid base modification.
6366 
6367  /// PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment.
6369 
6370  /// PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.
6372 
6373  /// contact role: Role of the contact person.
6374  MS_contact_role = 1002033,
6375 
6376  /// first author: The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution.
6377  MS_first_author = 1002034,
6378 
6379  /// senior author: The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution.
6380  MS_senior_author = 1002035,
6381 
6382  /// co-author: One of a set of authors associated with a publication or release.
6383  MS_co_author = 1002036,
6384 
6385  /// dataset submitter: A person who submits a dataset to a repository.
6387 
6388  /// unlabeled sample: A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\".
6390 
6391  /// light labeled sample (unlabeled sample): A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\".
6393 
6394  /// inlet attribute: Inlet properties that are associated with a value.
6396 
6397  /// inlet temperature: The temperature of the inlet of a mass spectrometer.
6399 
6400  /// source temperature: The temperature of the source of a mass spectrometer.
6402 
6403  /// modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column.
6405 
6406  /// ProteinProspector: ProteinProspector software for data acquisition and analysis.
6408 
6409  /// ProteinProspector:score: The ProteinProspector result 'Score'.
6411 
6412  /// ProteinProspector:expectation value: The ProteinProspector result 'Expectation value'.
6414 
6415  /// native source path: The original source path used for directory-based sources.
6417 
6418  /// MS-GF: MS-GF software used to re-score the peptide-spectrum matches.
6419  MS_MS_GF = 1002047,
6420 
6421  /// MS-GF+: MS-GF+ software used to analyze the spectra.
6422  MS_MS_GF_ = 1002048,
6423 
6424  /// MS-GF:RawScore: MS-GF raw score.
6426 
6427  /// MS-GF:DeNovoScore: MS-GF de novo score.
6429 
6430  /// MS-GF:Energy: MS-GF energy score.
6431  MS_MS_GF_Energy = 1002051,
6432 
6433  /// MS-GF:SpecEValue: MS-GF spectral E-value.
6435 
6436  /// MS-GF:EValue: MS-GF E-value.
6437  MS_MS_GF_EValue = 1002053,
6438 
6439  /// MS-GF:QValue: MS-GF Q-value.
6440  MS_MS_GF_QValue = 1002054,
6441 
6442  /// MS-GF:PepQValue: MS-GF peptide-level Q-value.
6444 
6445  /// MS-GF:PEP: MS-GF posterior error probability.
6446  MS_MS_GF_PEP = 1002056,
6447 
6448  /// unimod root node: The root node of the unimod modifications ontology.
6450 
6451  /// Acetyl: Acetylation.
6452  UNIMOD_Acetyl = 100000001,
6453 
6454  /// Amidated: Amidation.
6455  UNIMOD_Amidated = 100000002,
6456 
6457  /// Biotin: Biotinylation.
6458  UNIMOD_Biotin = 100000003,
6459 
6460  /// Carbamidomethyl: Iodoacetamide derivative.
6462 
6463  /// Carbamyl: Carbamylation.
6464  UNIMOD_Carbamyl = 100000005,
6465 
6466  /// Carboxymethyl: Iodoacetic acid derivative.
6468 
6469  /// Deamidated: Deamidation.
6470  UNIMOD_Deamidated = 100000007,
6471 
6472  /// ICAT-G: Gygi ICAT(TM) d0.
6473  UNIMOD_ICAT_G = 100000008,
6474 
6475  /// ICAT-G:2H(8): Gygi ICAT(TM) d8.
6476  UNIMOD_ICAT_G_2H_8_ = 100000009,
6477 
6478  /// Met->Hse: Homoserine.
6479  UNIMOD_Met__Hse = 100000010,
6480 
6481  /// Met->Hsl: Homoserine lactone.
6482  UNIMOD_Met__Hsl = 100000011,
6483 
6484  /// ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.
6485  UNIMOD_ICAT_D_2H_8_ = 100000012,
6486 
6487  /// ICAT-D: Applied Biosystems original ICAT(TM) d0.
6488  UNIMOD_ICAT_D = 100000013,
6489 
6490  /// NIPCAM: N-isopropylcarboxamidomethyl.
6491  UNIMOD_NIPCAM = 100000017,
6492 
6493  /// PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
6495 
6496  /// Phospho: Phosphorylation.
6497  UNIMOD_Phospho = 100000021,
6498 
6499  /// Dehydrated: Dehydration.
6500  UNIMOD_Dehydrated = 100000023,
6501 
6502  /// Propionamide: Acrylamide adduct.
6503  UNIMOD_Propionamide = 100000024,
6504 
6505  /// Pyridylacetyl: Pyridylacetyl.
6507 
6508  /// Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).
6510 
6511  /// Glu->pyro-Glu: Pyro-glu from E.
6513 
6514  /// Gln->pyro-Glu: Pyro-glu from Q.
6516 
6517  /// SMA: N-Succinimidyl-2-morpholine acetate.
6518  UNIMOD_SMA = 100000029,
6519 
6520  /// Cation:Na: Sodium adduct.
6521  UNIMOD_Cation_Na = 100000030,
6522 
6523  /// Pyridylethyl: S-pyridylethylation.
6524  UNIMOD_Pyridylethyl = 100000031,
6525 
6526  /// Methyl: Methylation.
6527  UNIMOD_Methyl = 100000034,
6528 
6529  /// Oxidation: Oxidation or Hydroxylation.
6530  UNIMOD_Oxidation = 100000035,
6531 
6532  /// Dimethyl: Di-Methylation.
6533  UNIMOD_Dimethyl = 100000036,
6534 
6535  /// Trimethyl: Tri-Methylation.
6536  UNIMOD_Trimethyl = 100000037,
6537 
6538  /// Methylthio: Beta-methylthiolation.
6539  UNIMOD_Methylthio = 100000039,
6540 
6541  /// Sulfo: O-Sulfonation.
6542  UNIMOD_Sulfo = 100000040,
6543 
6544  /// Hex: Hexose.
6545  UNIMOD_Hex = 100000041,
6546 
6547  /// Lipoyl: Lipoyl.
6548  UNIMOD_Lipoyl = 100000042,
6549 
6550  /// HexNAc: N-Acetylhexosamine.
6551  UNIMOD_HexNAc = 100000043,
6552 
6553  /// Farnesyl: Farnesylation.
6554  UNIMOD_Farnesyl = 100000044,
6555 
6556  /// Myristoyl: Myristoylation.
6557  UNIMOD_Myristoyl = 100000045,
6558 
6559  /// PyridoxalPhosphate: Pyridoxal phosphate.
6561 
6562  /// Palmitoyl: Palmitoylation.
6563  UNIMOD_Palmitoyl = 100000047,
6564 
6565  /// GeranylGeranyl: Geranyl-geranyl.
6567 
6568  /// Phosphopantetheine: Phosphopantetheine.
6570 
6571  /// FAD: Flavin adenine dinucleotide.
6572  UNIMOD_FAD = 100000050,
6573 
6574  /// Tripalmitate: N-acyl diglyceride cysteine.
6575  UNIMOD_Tripalmitate = 100000051,
6576 
6577  /// Guanidinyl: Guanidination.
6578  UNIMOD_Guanidinyl = 100000052,
6579 
6580  /// HNE: 4-hydroxynonenal (HNE).
6581  UNIMOD_HNE = 100000053,
6582 
6583  /// Glucuronyl: N-glucuronylation.
6584  UNIMOD_Glucuronyl = 100000054,
6585 
6586  /// Glutathione: Glutathione disulfide.
6587  UNIMOD_Glutathione = 100000055,
6588 
6589  /// Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu).
6590  UNIMOD_Acetyl_2H_3_ = 100000056,
6591 
6592  /// Propionyl: Propionate labeling reagent light form (N-term & K).
6593  UNIMOD_Propionyl = 100000058,
6594 
6595  /// Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K.
6597 
6598  /// GIST-Quat: Quaternary amine labeling reagent light form (N-term & K).
6599  UNIMOD_GIST_Quat = 100000060,
6600 
6601  /// GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K.
6603 
6604  /// GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K.
6606 
6607  /// GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K.
6609 
6610  /// Succinyl: Succinic anhydride labeling reagent light form (N-term & K).
6611  UNIMOD_Succinyl = 100000064,
6612 
6613  /// Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K.
6615 
6616  /// Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K.
6618 
6619  /// Iminobiotin: Iminobiotinylation.
6620  UNIMOD_Iminobiotin = 100000089,
6621 
6622  /// ESP: ESP-Tag light d0.
6623  UNIMOD_ESP = 100000090,
6624 
6625  /// ESP:2H(10): ESP-Tag heavy d10.
6626  UNIMOD_ESP_2H_10_ = 100000091,
6627 
6628  /// NHS-LC-Biotin: NHS-LC-Biotin.
6630 
6631  /// EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.
6633 
6634  /// IMID: IMID d0.
6635  UNIMOD_IMID = 100000094,
6636 
6637  /// IMID:2H(4): IMID d4.
6638  UNIMOD_IMID_2H_4_ = 100000095,
6639 
6640  /// Propionamide:2H(3): Acrylamide d3.
6642 
6643  /// ICAT-C: Applied Biosystems cleavable ICAT(TM) light.
6644  UNIMOD_ICAT_C = 100000105,
6645 
6646  /// ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.
6648 
6649  /// FormylMet: Addition of N-formyl met.
6650  UNIMOD_FormylMet = 100000107,
6651 
6652  /// Nethylmaleimide: N-ethylmaleimide on cysteines.
6654 
6655  /// OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.
6657 
6658  /// OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.
6659  UNIMOD_OxLysBiotin = 100000113,
6660 
6661  /// OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.
6663 
6664  /// OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.
6665  UNIMOD_OxProBiotin = 100000115,
6666 
6667  /// OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.
6668  UNIMOD_OxArgBiotin = 100000116,
6669 
6670  /// OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced.
6672 
6673  /// EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.
6675 
6676  /// IBTP: Thio Ether Formation - BTP Adduct.
6677  UNIMOD_IBTP = 100000119,
6678 
6679  /// GlyGly: Ubiquitinylation residue.
6680  UNIMOD_GlyGly = 100000121,
6681 
6682  /// Formyl: Formylation.
6683  UNIMOD_Formyl = 100000122,
6684 
6685  /// ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.
6686  UNIMOD_ICAT_H = 100000123,
6687 
6688  /// ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.
6690 
6691  /// Thioacyl: 3-sulfanylpropanoyl.
6692  UNIMOD_Thioacyl = 100000126,
6693 
6694  /// Fluoro: Fluorophenylalanine replacement of phenylalanine.
6695  UNIMOD_Fluoro = 100000127,
6696 
6697  /// Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).
6698  UNIMOD_Fluorescein = 100000128,
6699 
6700  /// Iodo: Iodination.
6701  UNIMOD_Iodo = 100000129,
6702 
6703  /// Diiodo: Di-Iodination.
6704  UNIMOD_Diiodo = 100000130,
6705 
6706  /// Triiodo: Tri-Iodination.
6707  UNIMOD_Triiodo = 100000131,
6708 
6709  /// Myristoleyl: (cis-delta 5)-tetradecaenoyl.
6710  UNIMOD_Myristoleyl = 100000134,
6711 
6712  /// Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.
6714 
6715  /// Benzoyl: Labeling reagent light form (N-term & K).
6716  UNIMOD_Benzoyl = 100000136,
6717 
6718  /// Hex(5)HexNAc(2): N-linked glycan core.
6720 
6721  /// Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.
6722  UNIMOD_Dansyl = 100000139,
6723 
6724  /// a-type-ion: ISD a-series (C-Term).
6725  UNIMOD_a_type_ion = 100000140,
6726 
6727  /// Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.
6728  UNIMOD_Amidine = 100000141,
6729 
6730  /// HexNAc(1)dHex(1): HexNAc1dHex1.
6732 
6733  /// HexNAc(2): HexNAc2.
6734  UNIMOD_HexNAc_2_ = 100000143,
6735 
6736  /// Hex(3): Hex3.
6737  UNIMOD_Hex_3_ = 100000144,
6738 
6739  /// HexNAc(1)dHex(2): HexNAc1dHex2.
6741 
6742  /// Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.
6744 
6745  /// HexNAc(2)dHex(1): HexNAc2dHex1.
6747 
6748  /// Hex(1)HexNAc(2): Hex1HexNAc2.
6750 
6751  /// Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.
6753 
6754  /// HexNAc(2)dHex(2): HexNAc2dHex2.
6756 
6757  /// Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.
6759 
6760  /// Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.
6762 
6763  /// Hex(2)HexNAc(2): Hex2HexNAc2.
6765 
6766  /// Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.
6768 
6769  /// Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.
6771 
6772  /// Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.
6774 
6775  /// Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.
6777 
6778  /// Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.
6780 
6781  /// Hex(3)HexNAc(2): Hex3HexNAc2.
6783 
6784  /// Hex(1)HexNAc(1)NeuAc(2): Hex1HexNAc1NeuAc2.
6786 
6787  /// Hex(3)HexNAc(2)P(1): Hex3HexNAc2P1.
6789 
6790  /// Delta:S(-1)Se(1): Selenium replaces sulfur.
6792 
6793  /// Delta:H(1)O(-1)18O(1): Glycosylated asparagine 18O labeling.
6795 
6796  /// NBS:13C(6): Shimadzu NBS-13C.
6797  UNIMOD_NBS_13C_6_ = 100000171,
6798 
6799  /// NBS: Shimadzu NBS-12C.
6800  UNIMOD_NBS = 100000172,
6801 
6802  /// BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.
6803  UNIMOD_BHT = 100000176,
6804 
6805  /// DAET: Phosphorylation to amine thiol.
6806  UNIMOD_DAET = 100000178,
6807 
6808  /// Label:13C(9): 13C(9) Silac label.
6809  UNIMOD_Label_13C_9_ = 100000184,
6810 
6811  /// Label:13C(9)+Phospho: C13 label (Phosphotyrosine).
6813 
6814  /// HPG: Hydroxyphenylglyoxal arginine.
6815  UNIMOD_HPG = 100000186,
6816 
6817  /// 2HPG: Bis(hydroxphenylglyoxal) arginine.
6818  UNIMOD_2HPG = 100000187,
6819 
6820  /// Label:13C(6): 13C(6) Silac label.
6821  UNIMOD_Label_13C_6_ = 100000188,
6822 
6823  /// Label:18O(2): O18 label at both C-terminal oxygens.
6824  UNIMOD_Label_18O_2_ = 100000193,
6825 
6826  /// AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.
6827  UNIMOD_AccQTag = 100000194,
6828 
6829  /// QAT: APTA-d0.
6830  UNIMOD_QAT = 100000195,
6831 
6832  /// QAT:2H(3): APTA d3.
6833  UNIMOD_QAT_2H_3_ = 100000196,
6834 
6835  /// EQAT: EAPTA d0.
6836  UNIMOD_EQAT = 100000197,
6837 
6838  /// EQAT:2H(5): EAPTA d5.
6839  UNIMOD_EQAT_2H_5_ = 100000198,
6840 
6841  /// Dimethyl:2H(4): DiMethyl-CHD2.
6843 
6844  /// Ethanedithiol: EDT.
6846 
6847  /// Delta:H(6)C(6)O(1): Acrolein addition +94.
6849 
6850  /// Delta:H(4)C(3)O(1): Acrolein addition +56.
6852 
6853  /// Delta:H(2)C(3): Acrolein addition +38.
6855 
6856  /// Delta:H(4)C(6): Acrolein addition +76.
6858 
6859  /// Delta:H(8)C(6)O(2): Acrolein addition +112.
6861 
6862  /// NEIAA: N-ethyl iodoacetamide-d0.
6863  UNIMOD_NEIAA = 100000211,
6864 
6865  /// NEIAA:2H(5): N-ethyl iodoacetamide-d5.
6866  UNIMOD_NEIAA_2H_5_ = 100000212,
6867 
6868  /// ADP-Ribosyl: ADP Ribose addition.
6869  UNIMOD_ADP_Ribosyl = 100000213,
6870 
6871  /// iTRAQ4plex: Representative mass and accurate mass for 116 & 117.
6872  UNIMOD_iTRAQ4plex = 100000214,
6873 
6874  /// IGBP: Light IDBEST tag for quantitation.
6875  UNIMOD_IGBP = 100000243,
6876 
6877  /// Crotonaldehyde: Crotonaldehyde.
6879 
6880  /// Delta:H(2)C(2): Acetaldehyde +26.
6882 
6883  /// Delta:H(4)C(2): Acetaldehyde +28.
6885 
6886  /// Delta:H(4)C(3): Propionaldehyde +40.
6888 
6889  /// Label:18O(1): O18 Labeling.
6890  UNIMOD_Label_18O_1_ = 100000258,
6891 
6892  /// Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.
6894 
6895  /// Thiophospho: Thiophosphorylation.
6896  UNIMOD_Thiophospho = 100000260,
6897 
6898  /// SPITC: 4-sulfophenyl isothiocyanate.
6899  UNIMOD_SPITC = 100000261,
6900 
6901  /// Label:2H(3): Trideuteration.
6902  UNIMOD_Label_2H_3_ = 100000262,
6903 
6904  /// PET: Phosphorylation to pyridyl thiol.
6905  UNIMOD_PET = 100000264,
6906 
6907  /// Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.
6909 
6910  /// Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.
6912 
6913  /// Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.
6915 
6916  /// Cytopiloyne: Nucleophilic addtion to cytopiloyne.
6917  UNIMOD_Cytopiloyne = 100000270,
6918 
6919  /// Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.
6921 
6922  /// CAF: Sulfonation of N-terminus.
6923  UNIMOD_CAF = 100000272,
6924 
6925  /// Xlink:SSD: Covalent modification of lysine by cross-linking reagent.
6926  UNIMOD_Xlink_SSD = 100000273,
6927 
6928  /// Nitrosyl: S-nitrosylation.
6929  UNIMOD_Nitrosyl = 100000275,
6930 
6931  /// AEBS: Aminoethylbenzenesulfonylation.
6932  UNIMOD_AEBS = 100000276,
6933 
6934  /// Ethanolyl: Ethanolation.
6935  UNIMOD_Ethanolyl = 100000278,
6936 
6937  /// Ethyl: Ethylation.
6938  UNIMOD_Ethyl = 100000280,
6939 
6940  /// CoenzymeA: Cysteine modified Coenzyme A.
6941  UNIMOD_CoenzymeA = 100000281,
6942 
6943  /// Methyl:2H(2): Deuterium Methylation of Lysine.
6944  UNIMOD_Methyl_2H_2_ = 100000284,
6945 
6946  /// SulfanilicAcid: Light Sulfanilic Acid (SA) C12.
6948 
6949  /// SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.
6951 
6952  /// Trp->Oxolactone: Tryptophan oxidation to oxolactone.
6954 
6955  /// Biotin-PEO-Amine: Biotin polyethyleneoxide amine.
6957 
6958  /// Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.
6959  UNIMOD_Biotin_HPDP = 100000290,
6960 
6961  /// Delta:Hg(1): Mercury Mercaptan.
6962  UNIMOD_Delta_Hg_1_ = 100000291,
6963 
6964  /// IodoU-AMP: Cross-link of (Iodo)-uracil MP with W,F,Y.
6965  UNIMOD_IodoU_AMP = 100000292,
6966 
6967  /// CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.
6969 
6970  /// IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.
6971  UNIMOD_IED_Biotin = 100000294,
6972 
6973  /// dHex: Fucose.
6974  UNIMOD_dHex = 100000295,
6975 
6976  /// Methyl:2H(3): Deuterated methyl ester.
6977  UNIMOD_Methyl_2H_3_ = 100000298,
6978 
6979  /// Carboxy: Carboxylation.
6980  UNIMOD_Carboxy = 100000299,
6981 
6982  /// Bromobimane: Monobromobimane derivative.
6983  UNIMOD_Bromobimane = 100000301,
6984 
6985  /// Menadione: Menadione quinone derivative.
6986  UNIMOD_Menadione = 100000302,
6987 
6988  /// DeStreak: Cysteine mercaptoethanol.
6989  UNIMOD_DeStreak = 100000303,
6990 
6991  /// dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).
6993 
6994  /// dHex(1)Hex(4)HexNAc(4): Fucosylated biantennary (-1 galactose).
6996 
6997  /// dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.
6999 
7000  /// Hex(3)HexNAc(4): Biantennary (-2 galactose).
7002 
7003  /// Hex(4)HexNAc(4): Biantennary (-1 galactose).
7005 
7006  /// Hex(5)HexNAc(4): Biantennary.
7008 
7009  /// Cysteinyl: Cysteinylation.
7010  UNIMOD_Cysteinyl = 100000312,
7011 
7012  /// Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.
7013  UNIMOD_Lys_loss = 100000313,
7014 
7015  /// Nmethylmaleimide: Nmethylmaleimide.
7017 
7018  /// DimethylpyrroleAdduct: 2,5-dimethypyrrole.
7020 
7021  /// Delta:H(2)C(5): MDA adduct +62.
7023 
7024  /// Delta:H(2)C(3)O(1): MDA adduct +54.
7026 
7027  /// Nethylmaleimide+water: Nethylmaleimidehydrolysis.
7029 
7030  /// Xlink:B10621: Bis-N-I-sulfonerahodamine.
7031  UNIMOD_Xlink_B10621 = 100000323,
7032 
7033  /// DTBP: Dimethyl 3,3\'-dithiobispropionimidate.
7034  UNIMOD_DTBP = 100000324,
7035 
7036  /// FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.
7037  UNIMOD_FP_Biotin = 100000325,
7038 
7039  /// Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.
7041 
7042  /// Methyl:2H(3)13C(1): Monomethylated arginine.
7044 
7045  /// Dimethyl:2H(6)13C(2): Dimethylated arginine.
7047 
7048  /// Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.
7050 
7051  /// Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.
7053 
7054  /// HNE+Delta:H(2): Reduced 4-Hydroxynonenal.
7056 
7057  /// Methylamine: Michael addition with methylamine.
7058  UNIMOD_Methylamine = 100000337,
7059 
7060  /// Bromo: Bromination.
7061  UNIMOD_Bromo = 100000340,
7062 
7063  /// Amino: Tyrosine oxidation to 2-aminotyrosine.
7064  UNIMOD_Amino = 100000342,
7065 
7066  /// Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.
7068 
7069  /// Arg->GluSA: Arginine oxidation to glutamic semialdehyde.
7070  UNIMOD_Arg__GluSA = 100000344,
7071 
7072  /// Trioxidation: Cysteine oxidation to cysteic acid.
7073  UNIMOD_Trioxidation = 100000345,
7074 
7075  /// His->Asn: His->Asn substitution.
7076  UNIMOD_His__Asn = 100000348,
7077 
7078  /// His->Asp: His->Asp substitution.
7079  UNIMOD_His__Asp = 100000349,
7080 
7081  /// Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.
7083 
7084  /// Trp->Kynurenin: Tryptophan oxidation to kynurenin.
7086 
7087  /// Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde.
7089 
7090  /// Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.
7092 
7093  /// Nitro: Oxidation to nitro.
7094  UNIMOD_Nitro = 100000354,
7095 
7096  /// probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.
7098 
7099  /// Pro->pyro-Glu: Proline oxidation to pyroglutamic acid.
7101 
7102  /// Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone.
7104 
7105  /// Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.
7107 
7108  /// Diisopropylphosphate: O-Diisopropylphosphorylation.
7110 
7111  /// Isopropylphospho: O-Isopropylphosphorylation.
7113 
7114  /// ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.
7115  UNIMOD_ICPL_13C_6_ = 100000364,
7116 
7117  /// ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.
7118  UNIMOD_ICPL = 100000365,
7119 
7120  /// Deamidated:18O(1): Deamidation in presence of O18.
7122 
7123  /// Cys->Dha: Dehydroalanine (from Cysteine).
7124  UNIMOD_Cys__Dha = 100000368,
7125 
7126  /// Pro->Pyrrolidone: Pyrrolidone from Proline.
7128 
7129  /// HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.
7130  UNIMOD_HMVK = 100000371,
7131 
7132  /// Arg->Orn: Ornithine from Arginine.
7133  UNIMOD_Arg__Orn = 100000372,
7134 
7135  /// Dehydro: Half of a disulfide bridge.
7136  UNIMOD_Dehydro = 100000374,
7137 
7138  /// Diphthamide: Diphthamide.
7139  UNIMOD_Diphthamide = 100000375,
7140 
7141  /// Hydroxyfarnesyl: Hydroxyfarnesyl.
7143 
7144  /// Diacylglycerol: Diacylglycerol.
7146 
7147  /// Carboxyethyl: Carboxyethyl.
7148  UNIMOD_Carboxyethyl = 100000378,
7149 
7150  /// Hypusine: Hypusine.
7151  UNIMOD_Hypusine = 100000379,
7152 
7153  /// Retinylidene: Retinal.
7154  UNIMOD_Retinylidene = 100000380,
7155 
7156  /// Lys->AminoadipicAcid: Alpha-amino adipic acid.
7158 
7159  /// Cys->PyruvicAcid: Pyruvic acid from N-term cys.
7161 
7162  /// Ammonia-loss: Loss of ammonia.
7163  UNIMOD_Ammonia_loss = 100000385,
7164 
7165  /// Phycocyanobilin: Phycocyanobilin.
7167 
7168  /// Phycoerythrobilin: Phycoerythrobilin.
7170 
7171  /// Phytochromobilin: Phytochromobilin.
7173 
7174  /// Heme: Heme.
7175  UNIMOD_Heme = 100000390,
7176 
7177  /// Molybdopterin: Molybdopterin.
7179 
7180  /// Quinone: Quinone.
7181  UNIMOD_Quinone = 100000392,
7182 
7183  /// Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.
7185 
7186  /// GPIanchor: Glycosylphosphatidylinositol.
7187  UNIMOD_GPIanchor = 100000394,
7188 
7189  /// PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.
7191 
7192  /// GlycerylPE: Glycerylphosphorylethanolamine.
7193  UNIMOD_GlycerylPE = 100000396,
7194 
7195  /// Triiodothyronine: Triiodo.
7197 
7198  /// Thyroxine: Tetraiodo.
7199  UNIMOD_Thyroxine = 100000398,
7200 
7201  /// Tyr->Dha: Dehydroalanine (from Tyrosine).
7202  UNIMOD_Tyr__Dha = 100000400,
7203 
7204  /// Didehydro: 2-amino-3-oxo-butanoic_acid.
7205  UNIMOD_Didehydro = 100000401,
7206 
7207  /// Cys->Oxoalanine: Oxoalanine.
7209 
7210  /// Ser->LacticAcid: Lactic acid from N-term Ser.
7212 
7213  /// Phosphoadenosine: AMP binding site.
7215 
7216  /// Hydroxycinnamyl: Hydroxycinnamyl.
7218 
7219  /// Glycosyl: Glycosyl-L-hydroxyproline.
7220  UNIMOD_Glycosyl = 100000408,
7221 
7222  /// FMNH: Flavin mononucleotide.
7223  UNIMOD_FMNH = 100000409,
7224 
7225  /// Archaeol: S-diphytanylglycerol diether.
7226  UNIMOD_Archaeol = 100000410,
7227 
7228  /// Phenylisocyanate: Phenyl isocyanate.
7230 
7231  /// Phenylisocyanate:2H(5): D5-phenyl isocyanate.
7233 
7234  /// Phosphoguanosine: Phospho-guanosine.
7236 
7237  /// Hydroxymethyl: Hydroxymethyl.
7239 
7240  /// MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide).
7242 
7243  /// Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.
7245 
7246  /// PhosphoUridine: Uridine phosphodiester.
7248 
7249  /// Glycerophospho: Glycerophospho.
7251 
7252  /// Carboxy->Thiocarboxy: Thiocarboxylic acid.
7254 
7255  /// Sulfide: Persulfide.
7256  UNIMOD_Sulfide = 100000421,
7257 
7258  /// PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.
7260 
7261  /// Delta:Se(1): Selenyl.
7262  UNIMOD_Delta_Se_1_ = 100000423,
7263 
7264  /// MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).
7266 
7267  /// Dioxidation: Dihydroxy.
7268  UNIMOD_Dioxidation = 100000425,
7269 
7270  /// Octanoyl: Octanoyl.
7271  UNIMOD_Octanoyl = 100000426,
7272 
7273  /// PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.
7275 
7276  /// PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.
7277  UNIMOD_PhosphoHex = 100000429,
7278 
7279  /// Palmitoleyl: Palmitoleyl.
7280  UNIMOD_Palmitoleyl = 100000431,
7281 
7282  /// Cholesterol: Cholesterol ester.
7283  UNIMOD_Cholesterol = 100000432,
7284 
7285  /// Didehydroretinylidene: 3,4-didehydroretinylidene.
7287 
7288  /// CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.
7289  UNIMOD_CHDH = 100000434,
7290 
7291  /// Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.
7293 
7294  /// Hydroxyheme: Hydroxyheme.
7295  UNIMOD_Hydroxyheme = 100000436,
7296 
7297  /// MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.
7298  UNIMOD_MicrocinC7 = 100000437,
7299 
7300  /// Cyano: Cyano.
7301  UNIMOD_Cyano = 100000438,
7302 
7303  /// Diironsubcluster: Hydrogenase diiron subcluster.
7305 
7306  /// Amidino: Amidino.
7307  UNIMOD_Amidino = 100000440,
7308 
7309  /// FMN: O3-(riboflavin phosphoryl).
7310  UNIMOD_FMN = 100000442,
7311 
7312  /// FMNC: S-(4a-FMN).
7313  UNIMOD_FMNC = 100000443,
7314 
7315  /// CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.
7316  UNIMOD_CuSMo = 100000444,
7317 
7318  /// Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.
7320 
7321  /// Deoxy: Reduction.
7322  UNIMOD_Deoxy = 100000447,
7323 
7324  /// Microcin: Microcin E492 siderophore ester from serine.
7325  UNIMOD_Microcin = 100000448,
7326 
7327  /// Decanoyl: Lipid.
7328  UNIMOD_Decanoyl = 100000449,
7329 
7330  /// Glu: Monoglutamyl.
7331  UNIMOD_Glu = 100000450,
7332 
7333  /// GluGlu: Diglutamyl.
7334  UNIMOD_GluGlu = 100000451,
7335 
7336  /// GluGluGlu: Triglutamyl.
7337  UNIMOD_GluGluGlu = 100000452,
7338 
7339  /// GluGluGluGlu: Tetraglutamyl.
7340  UNIMOD_GluGluGluGlu = 100000453,
7341 
7342  /// HexN: Hexosamine.
7343  UNIMOD_HexN = 100000454,
7344 
7345  /// Xlink:DMP-s: One end of crosslink attached, one end free.
7346  UNIMOD_Xlink_DMP_s = 100000455,
7347 
7348  /// Xlink:DMP: Both ends of crosslink attached to same peptide.
7349  UNIMOD_Xlink_DMP = 100000456,
7350 
7351  /// NDA: Naphthalene-2,3-dicarboxaldehyde.
7352  UNIMOD_NDA = 100000457,
7353 
7354  /// SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).
7355  UNIMOD_SPITC_13C_6_ = 100000464,
7356 
7357  /// AEC-MAEC: Aminoethylcysteine.
7358  UNIMOD_AEC_MAEC = 100000472,
7359 
7360  /// TMAB: 4-trimethyllammoniumbutyryl-.
7361  UNIMOD_TMAB = 100000476,
7362 
7363  /// TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.
7364  UNIMOD_TMAB_2H_9_ = 100000477,
7365 
7366  /// FTC: Fluorescein-5-thiosemicarbazide.
7367  UNIMOD_FTC = 100000478,
7368 
7369  /// Label:2H(4): 4,4,5,5-D4 Lysine.
7370  UNIMOD_Label_2H_4_ = 100000481,
7371 
7372  /// DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.
7373  UNIMOD_DHP = 100000488,
7374 
7375  /// Hep: Heptose.
7376  UNIMOD_Hep = 100000490,
7377 
7378  /// BADGE: Bisphenol A diglycidyl ether derivative.
7379  UNIMOD_BADGE = 100000493,
7380 
7381  /// CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.
7382  UNIMOD_CyDye_Cy3 = 100000494,
7383 
7384  /// CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.
7385  UNIMOD_CyDye_Cy5 = 100000495,
7386 
7387  /// BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.
7388  UNIMOD_BHTOH = 100000498,
7389 
7390  /// IGBP:13C(2): Heavy IDBEST tag for quantitation.
7391  UNIMOD_IGBP_13C_2_ = 100000499,
7392 
7393  /// Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.
7395 
7396  /// PyMIC: 3-methyl-2-pyridyl isocyanate.
7397  UNIMOD_PyMIC = 100000501,
7398 
7399  /// LG-lactam-K: Levuglandinyl - lysine lactam adduct.
7400  UNIMOD_LG_lactam_K = 100000503,
7401 
7402  /// LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.
7403  UNIMOD_LG_Hlactam_K = 100000504,
7404 
7405  /// LG-lactam-R: Levuglandinyl - arginine lactam adduct.
7406  UNIMOD_LG_lactam_R = 100000505,
7407 
7408  /// LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.
7409  UNIMOD_LG_Hlactam_R = 100000506,
7410 
7411  /// Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.
7413 
7414  /// Hex(2): Lactosylation.
7415  UNIMOD_Hex_2_ = 100000512,
7416 
7417  /// C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.
7418  UNIMOD_C8_QAT = 100000513,
7419 
7420  /// PropylNAGthiazoline: Propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline.
7422 
7423  /// FNEM: Fluorescein-5-maleimide.
7424  UNIMOD_FNEM = 100000515,
7425 
7426  /// Diethyl: Diethylation, analogous to Dimethylation.
7427  UNIMOD_Diethyl = 100000518,
7428 
7429  /// BisANS: 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid.
7430  UNIMOD_BisANS = 100000519,
7431 
7432  /// Piperidine: Piperidination.
7433  UNIMOD_Piperidine = 100000520,
7434 
7435  /// Maleimide-PEO2-Biotin: Maleimide-Biotin.
7437 
7438  /// Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.
7440 
7441  /// CLIP_TRAQ_2: CLIP_TRAQ_2.
7442  UNIMOD_CLIP_TRAQ_2 = 100000525,
7443 
7444  /// Dethiomethyl: Prompt loss of side chain from oxidised Met.
7445  UNIMOD_Dethiomethyl = 100000526,
7446 
7447  /// Methyl+Deamidated: Deamidation followed by a methylation.
7449 
7450  /// Delta:H(5)C(2): Dimethylation of proline residue.
7452 
7453  /// Cation:K: Replacement of proton by potassium.
7454  UNIMOD_Cation_K = 100000530,
7455 
7456  /// Cation:Cu[I]: Replacement of proton by copper.
7457  UNIMOD_Cation_Cu_I_ = 100000531,
7458 
7459  /// iTRAQ4plex114: Accurate mass for 114.
7461 
7462  /// iTRAQ4plex115: Accurate mass for 115.
7464 
7465  /// Dibromo: Dibromo.
7466  UNIMOD_Dibromo = 100000534,
7467 
7468  /// LeuArgGlyGly: Ubiquitination.
7469  UNIMOD_LeuArgGlyGly = 100000535,
7470 
7471  /// CLIP_TRAQ_3: CLIP_TRAQ_3.
7472  UNIMOD_CLIP_TRAQ_3 = 100000536,
7473 
7474  /// CLIP_TRAQ_4: CLIP_TRAQ_4.
7475  UNIMOD_CLIP_TRAQ_4 = 100000537,
7476 
7477  /// Biotin:Cayman-10141: Was 15dB-biotin.
7479 
7480  /// Biotin:Cayman-10013: Was PGA1-biotin.
7482 
7483  /// Ala->Ser: Ala->Ser substitution.
7484  UNIMOD_Ala__Ser = 100000540,
7485 
7486  /// Ala->Thr: Ala->Thr substitution.
7487  UNIMOD_Ala__Thr = 100000541,
7488 
7489  /// Ala->Asp: Ala->Asp substitution.
7490  UNIMOD_Ala__Asp = 100000542,
7491 
7492  /// Ala->Pro: Ala->Pro substitution.
7493  UNIMOD_Ala__Pro = 100000543,
7494 
7495  /// Ala->Gly: Ala->Gly substitution.
7496  UNIMOD_Ala__Gly = 100000544,
7497 
7498  /// Ala->Glu: Ala->Glu substitution.
7499  UNIMOD_Ala__Glu = 100000545,
7500 
7501  /// Ala->Val: Ala->Val substitution.
7502  UNIMOD_Ala__Val = 100000546,
7503 
7504  /// Cys->Phe: Cys->Phe substitution.
7505  UNIMOD_Cys__Phe = 100000547,
7506 
7507  /// Cys->Ser: Cys->Ser substitution.
7508  UNIMOD_Cys__Ser = 100000548,
7509 
7510  /// Cys->Trp: Cys->Trp substitution.
7511  UNIMOD_Cys__Trp = 100000549,
7512 
7513  /// Cys->Tyr: Cys->Tyr substitution.
7514  UNIMOD_Cys__Tyr = 100000550,
7515 
7516  /// Cys->Arg: Cys->Arg substitution.
7517  UNIMOD_Cys__Arg = 100000551,
7518 
7519  /// Cys->Gly: Cys->Gly substitution.
7520  UNIMOD_Cys__Gly = 100000552,
7521 
7522  /// Asp->Ala: Asp->Ala substitution.
7523  UNIMOD_Asp__Ala = 100000553,
7524 
7525  /// Asp->His: Asp->His substitution.
7526  UNIMOD_Asp__His = 100000554,
7527 
7528  /// Asp->Asn: Asp->Asn substitution.
7529  UNIMOD_Asp__Asn = 100000555,
7530 
7531  /// Asp->Gly: Asp->Gly substitution.
7532  UNIMOD_Asp__Gly = 100000556,
7533 
7534  /// Asp->Tyr: Asp->Tyr substitution.
7535  UNIMOD_Asp__Tyr = 100000557,
7536 
7537  /// Asp->Glu: Asp->Glu substitution.
7538  UNIMOD_Asp__Glu = 100000558,
7539 
7540  /// Asp->Val: Asp->Val substitution.
7541  UNIMOD_Asp__Val = 100000559,
7542 
7543  /// Glu->Ala: Glu->Ala substitution.
7544  UNIMOD_Glu__Ala = 100000560,
7545 
7546  /// Glu->Gln: Glu->Gln substitution.
7547  UNIMOD_Glu__Gln = 100000561,
7548 
7549  /// Glu->Asp: Glu->Asp substitution.
7550  UNIMOD_Glu__Asp = 100000562,
7551 
7552  /// Glu->Lys: Glu->Lys substitution.
7553  UNIMOD_Glu__Lys = 100000563,
7554 
7555  /// Glu->Gly: Glu->Gly substitution.
7556  UNIMOD_Glu__Gly = 100000564,
7557 
7558  /// Glu->Val: Glu->Val substitution.
7559  UNIMOD_Glu__Val = 100000565,
7560 
7561  /// Phe->Ser: Phe->Ser substitution.
7562  UNIMOD_Phe__Ser = 100000566,
7563 
7564  /// Phe->Cys: Phe->Cys substitution.
7565  UNIMOD_Phe__Cys = 100000567,
7566 
7567  /// Phe->Xle: Phe->Leu/Ile substitution.
7568  UNIMOD_Phe__Xle = 100000568,
7569 
7570  /// Phe->Tyr: Phe->Tyr substitution.
7571  UNIMOD_Phe__Tyr = 100000569,
7572 
7573  /// Phe->Val: Phe->Val substitution.
7574  UNIMOD_Phe__Val = 100000570,
7575 
7576  /// Gly->Ala: Gly->Ala substitution.
7577  UNIMOD_Gly__Ala = 100000571,
7578 
7579  /// Gly->Ser: Gly->Ser substitution.
7580  UNIMOD_Gly__Ser = 100000572,
7581 
7582  /// Gly->Trp: Gly->Trp substitution.
7583  UNIMOD_Gly__Trp = 100000573,
7584 
7585  /// Gly->Glu: Gly->Glu substitution.
7586  UNIMOD_Gly__Glu = 100000574,
7587 
7588  /// Gly->Val: Gly->Val substitution.
7589  UNIMOD_Gly__Val = 100000575,
7590 
7591  /// Gly->Asp: Gly->Asp substitution.
7592  UNIMOD_Gly__Asp = 100000576,
7593 
7594  /// Gly->Cys: Gly->Cys substitution.
7595  UNIMOD_Gly__Cys = 100000577,
7596 
7597  /// Gly->Arg: Gly->Arg substitution.
7598  UNIMOD_Gly__Arg = 100000578,
7599 
7600  /// His->Pro: His->Pro substitution.
7601  UNIMOD_His__Pro = 100000580,
7602 
7603  /// His->Tyr: His->Tyr substitution.
7604  UNIMOD_His__Tyr = 100000581,
7605 
7606  /// His->Gln: His->Gln substitution.
7607  UNIMOD_His__Gln = 100000582,
7608 
7609  /// His->Arg: His->Arg substitution.
7610  UNIMOD_His__Arg = 100000584,
7611 
7612  /// His->Xle: His->Leu/Ile substitution.
7613  UNIMOD_His__Xle = 100000585,
7614 
7615  /// Xle->Thr: Leu/Ile->Thr substitution.
7616  UNIMOD_Xle__Thr = 100000588,
7617 
7618  /// Xle->Asn: Leu/Ile->Asn substitution.
7619  UNIMOD_Xle__Asn = 100000589,
7620 
7621  /// Xle->Lys: Leu/Ile->Lys substitution.
7622  UNIMOD_Xle__Lys = 100000590,
7623 
7624  /// Lys->Thr: Lys->Thr substitution.
7625  UNIMOD_Lys__Thr = 100000594,
7626 
7627  /// Lys->Asn: Lys->Asn substitution.
7628  UNIMOD_Lys__Asn = 100000595,
7629 
7630  /// Lys->Glu: Lys->Glu substitution.
7631  UNIMOD_Lys__Glu = 100000596,
7632 
7633  /// Lys->Gln: Lys->Gln substitution.
7634  UNIMOD_Lys__Gln = 100000597,
7635 
7636  /// Lys->Met: Lys->Met substitution.
7637  UNIMOD_Lys__Met = 100000598,
7638 
7639  /// Lys->Arg: Lys->Arg substitution.
7640  UNIMOD_Lys__Arg = 100000599,
7641 
7642  /// Lys->Xle: Lys->Leu/Ile substitution.
7643  UNIMOD_Lys__Xle = 100000600,
7644 
7645  /// Xle->Ser: Leu/Ile->Ser substitution.
7646  UNIMOD_Xle__Ser = 100000601,
7647 
7648  /// Xle->Phe: Leu/Ile->Phe substitution.
7649  UNIMOD_Xle__Phe = 100000602,
7650 
7651  /// Xle->Trp: Leu/Ile->Trp substitution.
7652  UNIMOD_Xle__Trp = 100000603,
7653 
7654  /// Xle->Pro: Leu/Ile->Pro substitution.
7655  UNIMOD_Xle__Pro = 100000604,
7656 
7657  /// Xle->Val: Leu/Ile->Val substitution.
7658  UNIMOD_Xle__Val = 100000605,
7659 
7660  /// Xle->His: Leu/Ile->His substitution.
7661  UNIMOD_Xle__His = 100000606,
7662 
7663  /// Xle->Gln: Leu/Ile->Gln substitution.
7664  UNIMOD_Xle__Gln = 100000607,
7665 
7666  /// Xle->Met: Leu/Ile->Met substitution.
7667  UNIMOD_Xle__Met = 100000608,
7668 
7669  /// Xle->Arg: Leu/Ile->Arg substitution.
7670  UNIMOD_Xle__Arg = 100000609,
7671 
7672  /// Met->Thr: Met->Thr substitution.
7673  UNIMOD_Met__Thr = 100000610,
7674 
7675  /// Met->Arg: Met->Arg substitution.
7676  UNIMOD_Met__Arg = 100000611,
7677 
7678  /// Met->Lys: Met->Lys substitution.
7679  UNIMOD_Met__Lys = 100000613,
7680 
7681  /// Met->Xle: Met->Leu/Ile substitution.
7682  UNIMOD_Met__Xle = 100000614,
7683 
7684  /// Met->Val: Met->Val substitution.
7685  UNIMOD_Met__Val = 100000615,
7686 
7687  /// Asn->Ser: Asn->Ser substitution.
7688  UNIMOD_Asn__Ser = 100000616,
7689 
7690  /// Asn->Thr: Asn->Thr substitution.
7691  UNIMOD_Asn__Thr = 100000617,
7692 
7693  /// Asn->Lys: Asn->Lys substitution.
7694  UNIMOD_Asn__Lys = 100000618,
7695 
7696  /// Asn->Tyr: Asn->Tyr substitution.
7697  UNIMOD_Asn__Tyr = 100000619,
7698 
7699  /// Asn->His: Asn->His substitution.
7700  UNIMOD_Asn__His = 100000620,
7701 
7702  /// Asn->Asp: Asn->Asp substitution.
7703  UNIMOD_Asn__Asp = 100000621,
7704 
7705  /// Asn->Xle: Asn->Leu/Ile substitution.
7706  UNIMOD_Asn__Xle = 100000622,
7707 
7708  /// Pro->Ser: Pro->Ser substitution.
7709  UNIMOD_Pro__Ser = 100000623,
7710 
7711  /// Pro->Ala: Pro->Ala substitution.
7712  UNIMOD_Pro__Ala = 100000624,
7713 
7714  /// Pro->His: Pro->His substitution.
7715  UNIMOD_Pro__His = 100000625,
7716 
7717  /// Pro->Gln: Pro->Gln substitution.
7718  UNIMOD_Pro__Gln = 100000626,
7719 
7720  /// Pro->Thr: Pro->Thr substitution.
7721  UNIMOD_Pro__Thr = 100000627,
7722 
7723  /// Pro->Arg: Pro->Arg substitution.
7724  UNIMOD_Pro__Arg = 100000628,
7725 
7726  /// Pro->Xle: Pro->Leu/Ile substitution.
7727  UNIMOD_Pro__Xle = 100000629,
7728 
7729  /// Gln->Pro: Gln->Pro substitution.
7730  UNIMOD_Gln__Pro = 100000630,
7731 
7732  /// Gln->Lys: Gln->Lys substitution.
7733  UNIMOD_Gln__Lys = 100000631,
7734 
7735  /// Gln->Glu: Gln->Glu substitution.
7736  UNIMOD_Gln__Glu = 100000632,
7737 
7738  /// Gln->His: Gln->His substitution.
7739  UNIMOD_Gln__His = 100000633,
7740 
7741  /// Gln->Arg: Gln->Arg substitution.
7742  UNIMOD_Gln__Arg = 100000634,
7743 
7744  /// Gln->Xle: Gln->Leu/Ile substitution.
7745  UNIMOD_Gln__Xle = 100000635,
7746 
7747  /// Arg->Ser: Arg->Ser substitution.
7748  UNIMOD_Arg__Ser = 100000636,
7749 
7750  /// Arg->Trp: Arg->Trp substitution.
7751  UNIMOD_Arg__Trp = 100000637,
7752 
7753  /// Arg->Thr: Arg->Thr substitution.
7754  UNIMOD_Arg__Thr = 100000638,
7755 
7756  /// Arg->Pro: Arg->Pro substitution.
7757  UNIMOD_Arg__Pro = 100000639,
7758 
7759  /// Arg->Lys: Arg->Lys substitution.
7760  UNIMOD_Arg__Lys = 100000640,
7761 
7762  /// Arg->His: Arg->His substitution.
7763  UNIMOD_Arg__His = 100000641,
7764 
7765  /// Arg->Gln: Arg->Gln substitution.
7766  UNIMOD_Arg__Gln = 100000642,
7767 
7768  /// Arg->Met: Arg->Met substitution.
7769  UNIMOD_Arg__Met = 100000643,
7770 
7771  /// Arg->Cys: Arg->Cys substitution.
7772  UNIMOD_Arg__Cys = 100000644,
7773 
7774  /// Arg->Xle: Arg->Leu/Ile substitution.
7775  UNIMOD_Arg__Xle = 100000645,
7776 
7777  /// Arg->Gly: Arg->Gly substitution.
7778  UNIMOD_Arg__Gly = 100000646,
7779 
7780  /// Ser->Phe: Ser->Phe substitution.
7781  UNIMOD_Ser__Phe = 100000647,
7782 
7783  /// Ser->Ala: Ser->Ala substitution.
7784  UNIMOD_Ser__Ala = 100000648,
7785 
7786  /// Ser->Trp: Ser->Trp substitution.
7787  UNIMOD_Ser__Trp = 100000649,
7788 
7789  /// Ser->Thr: Ser->Thr substitution.
7790  UNIMOD_Ser__Thr = 100000650,
7791 
7792  /// Ser->Asn: Ser->Asn substitution.
7793  UNIMOD_Ser__Asn = 100000651,
7794 
7795  /// Ser->Pro: Ser->Pro substitution.
7796  UNIMOD_Ser__Pro = 100000652,
7797 
7798  /// Ser->Tyr: Ser->Tyr substitution.
7799  UNIMOD_Ser__Tyr = 100000653,
7800 
7801  /// Ser->Cys: Ser->Cys substitution.
7802  UNIMOD_Ser__Cys = 100000654,
7803 
7804  /// Ser->Arg: Ser->Arg substitution.
7805  UNIMOD_Ser__Arg = 100000655,
7806 
7807  /// Ser->Xle: Ser->Leu/Ile substitution.
7808  UNIMOD_Ser__Xle = 100000656,
7809 
7810  /// Ser->Gly: Ser->Gly substitution.
7811  UNIMOD_Ser__Gly = 100000657,
7812 
7813  /// Thr->Ser: Thr->Ser substitution.
7814  UNIMOD_Thr__Ser = 100000658,
7815 
7816  /// Thr->Ala: Thr->Ala substitution.
7817  UNIMOD_Thr__Ala = 100000659,
7818 
7819  /// Thr->Asn: Thr->Asn substitution.
7820  UNIMOD_Thr__Asn = 100000660,
7821 
7822  /// Thr->Lys: Thr->Lys substitution.
7823  UNIMOD_Thr__Lys = 100000661,
7824 
7825  /// Thr->Pro: Thr->Pro substitution.
7826  UNIMOD_Thr__Pro = 100000662,
7827 
7828  /// Thr->Met: Thr->Met substitution.
7829  UNIMOD_Thr__Met = 100000663,
7830 
7831  /// Thr->Xle: Thr->Leu/Ile substitution.
7832  UNIMOD_Thr__Xle = 100000664,
7833 
7834  /// Thr->Arg: Thr->Arg substitution.
7835  UNIMOD_Thr__Arg = 100000665,
7836 
7837  /// Val->Phe: Val->Phe substitution.
7838  UNIMOD_Val__Phe = 100000666,
7839 
7840  /// Val->Ala: Val->Ala substitution.
7841  UNIMOD_Val__Ala = 100000667,
7842 
7843  /// Val->Glu: Val->Glu substitution.
7844  UNIMOD_Val__Glu = 100000668,
7845 
7846  /// Val->Met: Val->Met substitution.
7847  UNIMOD_Val__Met = 100000669,
7848 
7849  /// Val->Asp: Val->Asp substitution.
7850  UNIMOD_Val__Asp = 100000670,
7851 
7852  /// Val->Xle: Val->Leu/Ile substitution.
7853  UNIMOD_Val__Xle = 100000671,
7854 
7855  /// Val->Gly: Val->Gly substitution.
7856  UNIMOD_Val__Gly = 100000672,
7857 
7858  /// Trp->Ser: Trp->Ser substitution.
7859  UNIMOD_Trp__Ser = 100000673,
7860 
7861  /// Trp->Cys: Trp->Cys substitution.
7862  UNIMOD_Trp__Cys = 100000674,
7863 
7864  /// Trp->Arg: Trp->Arg substitution.
7865  UNIMOD_Trp__Arg = 100000675,
7866 
7867  /// Trp->Gly: Trp->Gly substitution.
7868  UNIMOD_Trp__Gly = 100000676,
7869 
7870  /// Trp->Xle: Trp->Leu/Ile substitution.
7871  UNIMOD_Trp__Xle = 100000677,
7872 
7873  /// Tyr->Phe: Tyr->Phe substitution.
7874  UNIMOD_Tyr__Phe = 100000678,
7875 
7876  /// Tyr->Ser: Tyr->Ser substitution.
7877  UNIMOD_Tyr__Ser = 100000679,
7878 
7879  /// Tyr->Asn: Tyr->Asn substitution.
7880  UNIMOD_Tyr__Asn = 100000680,
7881 
7882  /// Tyr->His: Tyr->His substitution.
7883  UNIMOD_Tyr__His = 100000681,
7884 
7885  /// Tyr->Asp: Tyr->Asp substitution.
7886  UNIMOD_Tyr__Asp = 100000682,
7887 
7888  /// Tyr->Cys: Tyr->Cys substitution.
7889  UNIMOD_Tyr__Cys = 100000683,
7890 
7891  /// BDMAPP: Mass Defect Tag on lysine e-amino.
7892  UNIMOD_BDMAPP = 100000684,
7893 
7894  /// NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.
7895  UNIMOD_NA_LNO2 = 100000685,
7896 
7897  /// NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.
7898  UNIMOD_NA_OA_NO2 = 100000686,
7899 
7900  /// ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.
7901  UNIMOD_ICPL_2H_4_ = 100000687,
7902 
7903  /// Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.
7905 
7906  /// Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.
7908 
7909  /// NIC: Nicotinic Acid.
7910  UNIMOD_NIC = 100000697,
7911 
7912  /// dNIC: Deuterated Nicotinic Acid.
7913  UNIMOD_dNIC = 100000698,
7914 
7915  /// HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.
7917 
7918  /// 4-ONE: 4-Oxononenal (ONE).
7919  UNIMOD_4_ONE = 100000721,
7920 
7921  /// O-Dimethylphosphate: O-Dimethylphosphorylation.
7923 
7924  /// O-Methylphosphate: O-Methylphosphorylation.
7926 
7927  /// Diethylphosphate: O-Diethylphosphorylation.
7929 
7930  /// Ethylphosphate: O-Ethylphosphorylation.
7932 
7933  /// O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.
7935 
7936  /// Methylphosphonate: Methylphosphonylation.
7938 
7939  /// O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.
7941 
7942  /// iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117.
7943  UNIMOD_iTRAQ8plex = 100000730,
7944 
7945  /// iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121.
7947 
7948  /// Ethanolamine: Carboxyl modification with ethanolamine.
7949  UNIMOD_Ethanolamine = 100000734,
7950 
7951  /// DTT_ST: Dithiothreitol (DTT).
7952  UNIMOD_DTT_ST = 100000735,
7953 
7954  /// DTT_C: Dithiothreitol (DTT) on Cys.
7955  UNIMOD_DTT_C = 100000736,
7956 
7957  /// TMT6plex: Sixplex Tandem Mass Tag®.
7958  UNIMOD_TMT6plex = 100000737,
7959 
7960  /// TMT2plex: Duplex Tandem Mass Tag®.
7961  UNIMOD_TMT2plex = 100000738,
7962 
7963  /// TMT: Native Tandem Mass Tag®.
7964  UNIMOD_TMT = 100000739,
7965 
7966  /// ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.
7967  UNIMOD_ExacTagThiol = 100000740,
7968 
7969  /// ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.
7970  UNIMOD_ExacTagAmine = 100000741,
7971 
7972  /// 4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.
7974 
7975  /// NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.
7976  UNIMOD_NO_SMX_SEMD = 100000744,
7977 
7978  /// NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.
7979  UNIMOD_NO_SMX_SMCT = 100000745,
7980 
7981  /// NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.
7982  UNIMOD_NO_SMX_SIMD = 100000746,
7983 
7984  /// Malonyl: Malonylation of C and S residues.
7985  UNIMOD_Malonyl = 100000747,
7986 
7987  /// 3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.
7988  UNIMOD_3sulfo = 100000748,
7989 
7990  /// trifluoro: Trifluoroleucine replacement of leucine.
7991  UNIMOD_trifluoro = 100000750,
7992 
7993  /// TNBS: Tri nitro benzene.
7994  UNIMOD_TNBS = 100000751,
7995 
7996  /// IDEnT: Isotope Distribution Encoded Tag.
7997  UNIMOD_IDEnT = 100000762,
7998 
7999  /// DTT_ST:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of serines or threonines.
8000  UNIMOD_DTT_ST_2H_6_ = 100000763,
8001 
8002  /// DTT_C:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of cysteines.
8003  UNIMOD_DTT_C_2H_6_ = 100000764,
8004 
8005  /// Met-loss: Removal of initiator methionine from protein N-terminus.
8006  UNIMOD_Met_loss = 100000765,
8007 
8008  /// Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus.
8010 
8011  /// Menadione-HQ: Menadione hydroquinone derivative.
8012  UNIMOD_Menadione_HQ = 100000767,
8013 
8014  /// Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.
8016 
8017  /// lapachenole: Lapachenole photochemically added to cysteine.
8018  UNIMOD_lapachenole = 100000771,
8019 
8020  /// Label:13C(5): 13C(5) Silac label.
8021  UNIMOD_Label_13C_5_ = 100000772,
8022 
8023  /// maleimide: Maleimide.
8024  UNIMOD_maleimide = 100000773,
8025 
8026  /// Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.
8028 
8029  /// Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.
8031 
8032  /// NEM:2H(5): D5 N-ethylmaleimide on cysteines.
8033  UNIMOD_NEM_2H_5_ = 100000776,
8034 
8035  /// AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.
8037 
8038  /// Hex1HexNAc1: Hex1HexNAc1.
8039  UNIMOD_Hex1HexNAc1 = 100000793,
8040 
8041  /// Label:13C(6)+GlyGly: 13C6 labeled ubiquitinylation residue.
8043 
8044  /// Biotin:Thermo-21345: Was PentylamineBiotin.
8046 
8047  /// Pentylamine: Labeling transglutaminase substrate on glutamine side chain.
8048  UNIMOD_Pentylamine = 100000801,
8049 
8050  /// Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.
8052 
8053  /// Cy3b-maleimide: Fluorescent dye that labels cysteines.
8055 
8056  /// Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.
8058 
8059  /// BMOE: Addition of BMOE crosslinker.
8060  UNIMOD_BMOE = 100000824,
8061 
8062  /// DFDNB: Addition of DFDNB crosslinker.
8063  UNIMOD_DFDNB = 100000825,
8064 
8065  /// TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.
8066  UNIMOD_TMPP_Ac = 100000827,
8067 
8068  /// Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.
8070 
8071  /// Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.
8073 
8074  /// Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.
8076 
8077  /// Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.
8079 
8080  /// Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine.
8081  UNIMOD_Arg__Npo = 100000837,
8082 
8083  /// EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.
8084  UNIMOD_EQIGG = 100000846,
8085 
8086  /// Arg2PG: Adduct of phenylglyoxal with Arg.
8087  UNIMOD_Arg2PG = 100000848,
8088 
8089  /// cGMP: S-guanylation.
8090  UNIMOD_cGMP = 100000849,
8091 
8092  /// cGMP+RMP-loss: S-guanylation-2.
8094 
8095  /// Label:2H(4)+GlyGly: Ubiquitination 2H4 lysine.
8097 
8098  /// Label:13C(8)15N(2): 13C(8) 15N(2) Silac label.
8100 
8101  /// MG-H1: Methylglyoxal-derived hydroimidazolone.
8102  UNIMOD_MG_H1 = 100000859,
8103 
8104  /// G-H1: Glyoxal-derived hydroimiadazolone.
8105  UNIMOD_G_H1 = 100000860,
8106 
8107  /// ZGB: NHS ester linked Green Fluorescent Bodipy Dye.
8108  UNIMOD_ZGB = 100000861,
8109 
8110  /// Label:13C(1)2H(3): SILAC.
8112 
8113  /// Label:13C(6)15N(2)+GlyGly: 13C(6) 15N(2) Lysine glygly.
8115 
8116  /// ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form.
8118 
8119  /// QEQTGG: SUMOylation by SUMO-1.
8120  UNIMOD_QEQTGG = 100000876,
8121 
8122  /// QQQTGG: SUMOylation by SUMO-2/3.
8123  UNIMOD_QQQTGG = 100000877,
8124 
8125  /// Bodipy: Bodipy modifications onto cysteine.
8126  UNIMOD_Bodipy = 100000878,
8127 
8128  /// Biotin:Thermo-21325: Was ChromoBiotin.
8130 
8131  /// Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.
8133 
8134  /// HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.
8136 
8137  /// MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).
8138  UNIMOD_MDCC = 100000887,
8139 
8140  /// mTRAQ: MTRAQ light.
8141  UNIMOD_mTRAQ = 100000888,
8142 
8143  /// mTRAQ:13C(3)15N(1): MTRAQ medium.
8145 
8146  /// DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.
8148 
8149  /// Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.
8151 
8152  /// CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.
8154 
8155  /// CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.
8157 
8158  /// Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.
8160 
8161  /// Met->Aha: Methionine replacement by azido homoalanine.
8162  UNIMOD_Met__Aha = 100000896,
8163 
8164  /// Label:15N(4): SILAC 15N(4).
8165  UNIMOD_Label_15N_4_ = 100000897,
8166 
8167  /// pyrophospho: Pyrophosphorylation of Ser/Thr.
8168  UNIMOD_pyrophospho = 100000898,
8169 
8170  /// Met->Hpg: Methionine replacement by homopropargylglycine.
8171  UNIMOD_Met__Hpg = 100000899,
8172 
8173  /// 4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine.
8174  UNIMOD_4AcAllylGal = 100000901,
8175 
8176  /// DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.
8178 
8179  /// Lys->CamCys: Lys->Cys substitution and carbamidomethylation.
8180  UNIMOD_Lys__CamCys = 100000903,
8181 
8182  /// Phe->CamCys: Phe->Cys substitution and carbamidomethylation.
8183  UNIMOD_Phe__CamCys = 100000904,
8184 
8185  /// Leu->MetOx: Leu->Met substitution and sulfoxidation.
8186  UNIMOD_Leu__MetOx = 100000905,
8187 
8188  /// Lys->MetOx: Lys->Met substitution and sulfoxidation.
8189  UNIMOD_Lys__MetOx = 100000906,
8190 
8191  /// Galactosyl: Galactosyl hydroxylysine.
8192  UNIMOD_Galactosyl = 100000907,
8193 
8194  /// SMCC-maleimide: Modified SMCC maleimide with 3-(dimethylamino)-1-propylamine.
8196 
8197  /// Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.
8199 
8200  /// MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL).
8201  UNIMOD_MTSL = 100000911,
8202 
8203  /// HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.
8204  UNIMOD_HNE_BAHAH = 100000912,
8205 
8206  /// Methylmalonylation: Methylmalonylation on Serine.
8208 
8209  /// Ethoxyformyl: Ethoxyformylation.
8210  UNIMOD_Ethoxyformyl = 100000915,
8211 
8212  /// Label:13C(4)15N(2)+GlyGly: 13C(4) 15N(2) Lysine glygly.
8214 
8215  /// ethylamino: Ethyl amino.
8216  UNIMOD_ethylamino = 100000926,
8217 
8218  /// MercaptoEthanol: 2-OH-ethyl thio-Ser.
8220 
8221  /// EthylAmide: Solvolysis of amide group on Asn or Gln by ethanol.
8222  UNIMOD_EthylAmide = 100000931,
8223 
8224  /// VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).
8225  UNIMOD_VFQQQTGG = 100000932,
8226 
8227  /// VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).
8228  UNIMOD_VIEVYQEQTGG = 100000933,
8229 
8230  /// AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.
8231  UNIMOD_AMTzHexNAc2 = 100000934,
8232 
8233  /// Atto495Maleimide: High molecular absorption maleimide label for proteins.
8235 
8236  /// Chlorination: Chlorination of tyrosine residues.
8237  UNIMOD_Chlorination = 100000936,
8238 
8239  /// dichlorination: Dichlorination.
8241 
8242  /// AROD: Cysteine modifier.
8243  UNIMOD_AROD = 100000938,
8244 
8245  /// Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine.
8247 
8248  /// Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine.
8250 
8251  /// DNPS: 2,4-Dinitrobenzenesulfenyl.
8252  UNIMOD_DNPS = 100000941,
8253 
8254  /// SulfoGMBS: High molecular absorption label for proteins.
8255  UNIMOD_SulfoGMBS = 100000942,
8256 
8257  /// DimethylamineGMBS: Modified GMBS X linker for proteins.
8259 
8260  /// Label:15N(2)2H(9): SILAC label.
8262 
8263  /// LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.
8265 
8266  /// LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.
8267  UNIMOD_LG_pyrrole = 100000947,
8268 
8269  /// LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.
8271 
8272  /// 3-deoxyglucosone: Condensation product of 3-deoxyglucosone.
8274 
8275  /// Cation:Li: Replacement of proton by lithium.
8276  UNIMOD_Cation_Li = 100000950,
8277 
8278  /// Cation:Ca[II]: Replacement of 2 protons by calcium.
8280 
8281  /// Cation:Fe[II]: Replacement of 2 protons by iron.
8283 
8284  /// Cation:Ni[II]: Replacement of 2 protons by nickel.
8286 
8287  /// Cation:Zn[II]: Replacement of 2 protons by zinc.
8289 
8290  /// Cation:Ag: Replacement of proton by silver.
8291  UNIMOD_Cation_Ag = 100000955,
8292 
8293  /// Cation:Mg[II]: Replacement of 2 protons by magnesium.
8295 
8296  /// 2-succinyl: S-(2-succinyl) cysteine.
8297  UNIMOD_2_succinyl = 100000957,
8298 
8299  /// Propargylamine: Propargylamine.
8301 
8302  /// Phosphopropargyl: Phospho-propargylamine.
8304 
8305  /// SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.
8306  UNIMOD_SUMO2135 = 100000960,
8307 
8308  /// SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.
8309  UNIMOD_SUMO3549 = 100000961,
8310 
8311  /// thioacylPA: Membrane protein extraction.
8312  UNIMOD_thioacylPA = 100000967,
8313 
8314  /// maleimide3: Maleimide-3-saccharide.
8315  UNIMOD_maleimide3 = 100000971,
8316 
8317  /// maleimide5: Maleimide-5-saccharide.
8318  UNIMOD_maleimide5 = 100000972,
8319 
8320  /// Puromycin: Puromycin.
8321  UNIMOD_Puromycin = 100000973,
8322 
8323  /// Chlorpyrifos: O,O-diethyl o-3,5,6-trichloro-2-pyridyl phosphorothioate.
8324  UNIMOD_Chlorpyrifos = 100000975,
8325 
8326  /// Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.
8327  UNIMOD_Carbofuran = 100000977,
8328 
8329  /// BITC: Benzyl isothiocyanate.
8330  UNIMOD_BITC = 100000978,
8331 
8332  /// PEITC: Phenethyl isothiocyanate.
8333  UNIMOD_PEITC = 100000979,
8334 
8335  /// glucosone: Condensation product of glucosone.
8336  UNIMOD_glucosone = 100000981,
8337 
8338  /// cysTMT: Native cysteine-reactive Tandem Mass Tag®.
8339  UNIMOD_cysTMT = 100000984,
8340 
8341  /// cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.
8342  UNIMOD_cysTMT6plex = 100000985,
8343 
8344  /// Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.
8346 
8347  /// Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.
8349 
8350  /// Ammonium: Replacement of proton with ammonium ion.
8351  UNIMOD_Ammonium = 100000989,
8352 
8353  /// ISD_z+2_ion: ISD (z+2)-series.
8354  UNIMOD_ISD_z_2_ion = 100000991,
8355 
8356  /// Biotin:Sigma-B1267: Was Biotin-maleimide.
8358 
8359  /// Label:15N(1): 15N(1).
8360  UNIMOD_Label_15N_1_ = 100000994,
8361 
8362  /// Label:15N(2): 15N(2).
8363  UNIMOD_Label_15N_2_ = 100000995,
8364 
8365  /// Label:15N(3): 15N(3).
8366  UNIMOD_Label_15N_3_ = 100000996,
8367 
8368  /// sulfo+amino: Aminotyrosine with sulfation.
8369  UNIMOD_sulfo_amino = 100000997,
8370 
8371  /// BHAc: N-biotinyl-6-aminohexanoyl.
8372  UNIMOD_BHAc = 100000998,
8373 
8374  /// AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).
8375  UNIMOD_AHA_Alkyne = 100001000,
8376 
8377  /// AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).
8379 
8380  /// EGCG1: (-)-epigallocatechin-3-gallate.
8381  UNIMOD_EGCG1 = 100001002,
8382 
8383  /// EGCG2: (-)-dehydroepigallocatechin.
8384  UNIMOD_EGCG2 = 100001003,
8385 
8386  /// Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).
8388 
8389  /// Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).
8391 
8392  /// Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).
8394 
8395  /// Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).
8397 
8398  /// SecCarbamidomethyl: Sec Iodoacetamide derivative.
8400 
8401  /// Thiazolidine: Addition of Carbon to cysteine.
8402  UNIMOD_Thiazolidine = 100001009,
8403 
8404  /// DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.
8406 
8407  /// Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.
8409 
8410  /// glycidamide: Glycidamide adduct.
8411  UNIMOD_glycidamide = 100001014,
8412 
8413  /// Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.
8414  UNIMOD_Ahx2_Hsl = 100001015,
8415 
8416  /// DMPO: DMPO spin-trap nitrone adduct.
8417  UNIMOD_DMPO = 100001017,
8418 
8419  /// ICDID: Isotope-Coded Dimedone light form.
8420  UNIMOD_ICDID = 100001018,
8421 
8422  /// ICDID:2H(6): Isotope-Coded Dimedone heavy form.
8423  UNIMOD_ICDID_2H_6_ = 100001019,
8424 
8425  /// Xlink:DSS: Monolink of DSS/BS3 crosslinker to Lys or N-terminus.
8426  UNIMOD_Xlink_DSS = 100001020,
8427 
8428  /// Xlink:EGS: Monolink of EGS crosslinker to Lys or N-terminus.
8429  UNIMOD_Xlink_EGS = 100001021,
8430 
8431  /// Xlink:DST: Monolink of DST crosslinker to Lys or N-terminus.
8432  UNIMOD_Xlink_DST = 100001022,
8433 
8434  /// Xlink:DTSSP: Monolink of DSP/DTSSP crosslinker to Lys or N-terminus.
8435  UNIMOD_Xlink_DTSSP = 100001023,
8436 
8437  /// Xlink:SMCC: Monolink of sulfoSMCC/SMCC crosslinker to Cys.
8438  UNIMOD_Xlink_SMCC = 100001024,
8439 
8440  /// Xlink:DMP-de: Monolink of DMP crosslinker to Lys or N-terminus.
8441  UNIMOD_Xlink_DMP_de = 100001027,
8442 
8443  /// Xlink:EGScleaved: EGS crosslinker to Lys or N-terminus following hydroxylamine cleavage.
8445 
8446  /// Biotin:Thermo-88310: Desthiobiotin modification of lysine.
8448 
8449  /// 2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).
8451 
8452  /// SecNEM: N-ethylmaleimide on selenocysteines.
8453  UNIMOD_SecNEM = 100001033,
8454 
8455  /// SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.
8456  UNIMOD_SecNEM_2H_5_ = 100001034,
8457 
8458  /// Thiadiazole: Thiadiazolydation of Cys.
8459  UNIMOD_Thiadiazole = 100001035,
8460 
8461  /// Withaferin: Modification of cystein by withaferin.
8462  UNIMOD_Withaferin = 100001036,
8463 
8464  /// Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.
8466 
8467  /// TAMRA-FP: TAMRA fluorophosphonate modification of serine.
8468  UNIMOD_TAMRA_FP = 100001038,
8469 
8470  /// Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.
8472 
8473  /// Deoxyhypusine: Deoxyhypusine.
8475 
8476  /// Acetyldeoxyhypusine: Acetyldeoxyhypusine.
8478 
8479  /// Acetylhypusine: Acetylhypusine.
8481 
8482  /// Ala->Cys: Ala->Cys substitution.
8483  UNIMOD_Ala__Cys = 100001044,
8484 
8485  /// Ala->Phe: Ala->Phe substitution.
8486  UNIMOD_Ala__Phe = 100001045,
8487 
8488  /// Ala->His: Ala->His substitution.
8489  UNIMOD_Ala__His = 100001046,
8490 
8491  /// Ala->Xle: Ala->Leu/Ile substitution.
8492  UNIMOD_Ala__Xle = 100001047,
8493 
8494  /// Ala->Lys: Ala->Lys substitution.
8495  UNIMOD_Ala__Lys = 100001048,
8496 
8497  /// Ala->Met: Ala->Met substitution.
8498  UNIMOD_Ala__Met = 100001049,
8499 
8500  /// Ala->Asn: Ala->Asn substitution.
8501  UNIMOD_Ala__Asn = 100001050,
8502 
8503  /// Ala->Gln: Ala->Gln substitution.
8504  UNIMOD_Ala__Gln = 100001051,
8505 
8506  /// Ala->Arg: Ala->Arg substitution.
8507  UNIMOD_Ala__Arg = 100001052,
8508 
8509  /// Ala->Trp: Ala->Trp substitution.
8510  UNIMOD_Ala__Trp = 100001053,
8511 
8512  /// Ala->Tyr: Ala->Tyr substitution.
8513  UNIMOD_Ala__Tyr = 100001054,
8514 
8515  /// Cys->Ala: Cys->Ala substitution.
8516  UNIMOD_Cys__Ala = 100001055,
8517 
8518  /// Cys->Asp: Cys->Asp substitution.
8519  UNIMOD_Cys__Asp = 100001056,
8520 
8521  /// Cys->Glu: Cys->Glu substitution.
8522  UNIMOD_Cys__Glu = 100001057,
8523 
8524  /// Cys->His: Cys->His substitution.
8525  UNIMOD_Cys__His = 100001058,
8526 
8527  /// Cys->Xle: Cys->Leu/Ile substitution.
8528  UNIMOD_Cys__Xle = 100001059,
8529 
8530  /// Cys->Lys: Cys->Lys substitution.
8531  UNIMOD_Cys__Lys = 100001060,
8532 
8533  /// Cys->Met: Cys->Met substitution.
8534  UNIMOD_Cys__Met = 100001061,
8535 
8536  /// Cys->Asn: Cys->Asn substitution.
8537  UNIMOD_Cys__Asn = 100001062,
8538 
8539  /// Cys->Pro: Cys->Pro substitution.
8540  UNIMOD_Cys__Pro = 100001063,
8541 
8542  /// Cys->Gln: Cys->Gln substitution.
8543  UNIMOD_Cys__Gln = 100001064,
8544 
8545  /// Cys->Thr: Cys->Thr substitution.
8546  UNIMOD_Cys__Thr = 100001065,
8547 
8548  /// Cys->Val: Cys->Val substitution.
8549  UNIMOD_Cys__Val = 100001066,
8550 
8551  /// Asp->Cys: Asp->Cys substitution.
8552  UNIMOD_Asp__Cys = 100001067,
8553 
8554  /// Asp->Phe: Asp->Phe substitution.
8555  UNIMOD_Asp__Phe = 100001068,
8556 
8557  /// Asp->Xle: Asp->Leu/Ile substitution.
8558  UNIMOD_Asp__Xle = 100001069,
8559 
8560  /// Asp->Lys: Asp->Lys substitution.
8561  UNIMOD_Asp__Lys = 100001070,
8562 
8563  /// Asp->Met: Asp->Met substitution.
8564  UNIMOD_Asp__Met = 100001071,
8565 
8566  /// Asp->Pro: Asp->Pro substitution.
8567  UNIMOD_Asp__Pro = 100001072,
8568 
8569  /// Asp->Gln: Asp->Gln substitution.
8570  UNIMOD_Asp__Gln = 100001073,
8571 
8572  /// Asp->Arg: Asp->Arg substitution.
8573  UNIMOD_Asp__Arg = 100001074,
8574 
8575  /// Asp->Ser: Asp->Ser substitution.
8576  UNIMOD_Asp__Ser = 100001075,
8577 
8578  /// Asp->Thr: Asp->Thr substitution.
8579  UNIMOD_Asp__Thr = 100001076,
8580 
8581  /// Asp->Trp: Asp->Trp substitution.
8582  UNIMOD_Asp__Trp = 100001077,
8583 
8584  /// Glu->Cys: Glu->Cys substitution.
8585  UNIMOD_Glu__Cys = 100001078,
8586 
8587  /// Glu->Phe: Glu->Phe substitution.
8588  UNIMOD_Glu__Phe = 100001079,
8589 
8590  /// Glu->His: Glu->His substitution.
8591  UNIMOD_Glu__His = 100001080,
8592 
8593  /// Glu->Xle: Glu->Leu/Ile substitution.
8594  UNIMOD_Glu__Xle = 100001081,
8595 
8596  /// Glu->Met: Glu->Met substitution.
8597  UNIMOD_Glu__Met = 100001082,
8598 
8599  /// Glu->Asn: Glu->Asn substitution.
8600  UNIMOD_Glu__Asn = 100001083,
8601 
8602  /// Glu->Pro: Glu->Pro substitution.
8603  UNIMOD_Glu__Pro = 100001084,
8604 
8605  /// Glu->Arg: Glu->Arg substitution.
8606  UNIMOD_Glu__Arg = 100001085,
8607 
8608  /// Glu->Ser: Glu->Ser substitution.
8609  UNIMOD_Glu__Ser = 100001086,
8610 
8611  /// Glu->Thr: Glu->Thr substitution.
8612  UNIMOD_Glu__Thr = 100001087,
8613 
8614  /// Glu->Trp: Glu->Trp substitution.
8615  UNIMOD_Glu__Trp = 100001088,
8616 
8617  /// Glu->Tyr: Glu->Tyr substitution.
8618  UNIMOD_Glu__Tyr = 100001089,
8619 
8620  /// Phe->Ala: Phe->Ala substitution.
8621  UNIMOD_Phe__Ala = 100001090,
8622 
8623  /// Phe->Asp: Phe->Asp substitution.
8624  UNIMOD_Phe__Asp = 100001091,
8625 
8626  /// Phe->Glu: Phe->Glu substitution.
8627  UNIMOD_Phe__Glu = 100001092,
8628 
8629  /// Phe->Gly: Phe->Gly substitution.
8630  UNIMOD_Phe__Gly = 100001093,
8631 
8632  /// Phe->His: Phe->His substitution.
8633  UNIMOD_Phe__His = 100001094,
8634 
8635  /// Phe->Lys: Phe->Lys substitution.
8636  UNIMOD_Phe__Lys = 100001095,
8637 
8638  /// Phe->Met: Phe->Met substitution.
8639  UNIMOD_Phe__Met = 100001096,
8640 
8641  /// Phe->Asn: Phe->Asn substitution.
8642  UNIMOD_Phe__Asn = 100001097,
8643 
8644  /// Phe->Pro: Phe->Pro substitution.
8645  UNIMOD_Phe__Pro = 100001098,
8646 
8647  /// Phe->Gln: Phe->Gln substitution.
8648  UNIMOD_Phe__Gln = 100001099,
8649 
8650  /// Phe->Arg: Phe->Arg substitution.
8651  UNIMOD_Phe__Arg = 100001100,
8652 
8653  /// Phe->Thr: Phe->Thr substitution.
8654  UNIMOD_Phe__Thr = 100001101,
8655 
8656  /// Phe->Trp: Phe->Trp substitution.
8657  UNIMOD_Phe__Trp = 100001102,
8658 
8659  /// Gly->Phe: Gly->Phe substitution.
8660  UNIMOD_Gly__Phe = 100001103,
8661 
8662  /// Gly->His: Gly->His substitution.
8663  UNIMOD_Gly__His = 100001104,
8664 
8665  /// Gly->Xle: Gly->Leu/Ile substitution.
8666  UNIMOD_Gly__Xle = 100001105,
8667 
8668  /// Gly->Lys: Gly->Lys substitution.
8669  UNIMOD_Gly__Lys = 100001106,
8670 
8671  /// Gly->Met: Gly->Met substitution.
8672  UNIMOD_Gly__Met = 100001107,
8673 
8674  /// Gly->Asn: Gly->Asn substitution.
8675  UNIMOD_Gly__Asn = 100001108,
8676 
8677  /// Gly->Pro: Gly->Pro substitution.
8678  UNIMOD_Gly__Pro = 100001109,
8679 
8680  /// Gly->Gln: Gly->Gln substitution.
8681  UNIMOD_Gly__Gln = 100001110,
8682 
8683  /// Gly->Thr: Gly->Thr substitution.
8684  UNIMOD_Gly__Thr = 100001111,
8685 
8686  /// Gly->Tyr: Gly->Tyr substitution.
8687  UNIMOD_Gly__Tyr = 100001112,
8688 
8689  /// His->Ala: His->Ala substitution.
8690  UNIMOD_His__Ala = 100001113,
8691 
8692  /// His->Cys: His->Cys substitution.
8693  UNIMOD_His__Cys = 100001114,
8694 
8695  /// His->Glu: His->Glu substitution.
8696  UNIMOD_His__Glu = 100001115,
8697 
8698  /// His->Phe: His->Phe substitution.
8699  UNIMOD_His__Phe = 100001116,
8700 
8701  /// His->Gly: His->Gly substitution.
8702  UNIMOD_His__Gly = 100001117,
8703 
8704  /// His->Lys: His->Lys substitution.
8705  UNIMOD_His__Lys = 100001119,
8706 
8707  /// His->Met: His->Met substitution.
8708  UNIMOD_His__Met = 100001120,
8709 
8710  /// His->Ser: His->Ser substitution.
8711  UNIMOD_His__Ser = 100001121,
8712 
8713  /// His->Thr: His->Thr substitution.
8714  UNIMOD_His__Thr = 100001122,
8715 
8716  /// His->Val: His->Val substitution.
8717  UNIMOD_His__Val = 100001123,
8718 
8719  /// His->Trp: His->Trp substitution.
8720  UNIMOD_His__Trp = 100001124,
8721 
8722  /// Xle->Ala: Leu/Ile->Ala substitution.
8723  UNIMOD_Xle__Ala = 100001125,
8724 
8725  /// Xle->Cys: Leu/Ile->Cys substitution.
8726  UNIMOD_Xle__Cys = 100001126,
8727 
8728  /// Xle->Asp: Leu/Ile->Asp substitution.
8729  UNIMOD_Xle__Asp = 100001127,
8730 
8731  /// Xle->Glu: Leu/Ile->Glu substitution.
8732  UNIMOD_Xle__Glu = 100001128,
8733 
8734  /// Xle->Gly: Leu/Ile->Gly substitution.
8735  UNIMOD_Xle__Gly = 100001129,
8736 
8737  /// Xle->Tyr: Leu/Ile->Tyr substitution.
8738  UNIMOD_Xle__Tyr = 100001130,
8739 
8740  /// Lys->Ala: Lys->Ala substitution.
8741  UNIMOD_Lys__Ala = 100001131,
8742 
8743  /// Lys->Cys: Lys->Cys substitution.
8744  UNIMOD_Lys__Cys = 100001132,
8745 
8746  /// Lys->Asp: Lys->Asp substitution.
8747  UNIMOD_Lys__Asp = 100001133,
8748 
8749  /// Lys->Phe: Lys->Phe substitution.
8750  UNIMOD_Lys__Phe = 100001134,
8751 
8752  /// Lys->Gly: Lys->Gly substitution.
8753  UNIMOD_Lys__Gly = 100001135,
8754 
8755  /// Lys->His: Lys->His substitution.
8756  UNIMOD_Lys__His = 100001136,
8757 
8758  /// Lys->Pro: Lys->Pro substitution.
8759  UNIMOD_Lys__Pro = 100001137,
8760 
8761  /// Lys->Ser: Lys->Ser substitution.
8762  UNIMOD_Lys__Ser = 100001138,
8763 
8764  /// Lys->Val: Lys->Val substitution.
8765  UNIMOD_Lys__Val = 100001139,
8766 
8767  /// Lys->Trp: Lys->Trp substitution.
8768  UNIMOD_Lys__Trp = 100001140,
8769 
8770  /// Lys->Tyr: Lys->Tyr substitution.
8771  UNIMOD_Lys__Tyr = 100001141,
8772 
8773  /// Met->Ala: Met->Ala substitution.
8774  UNIMOD_Met__Ala = 100001142,
8775 
8776  /// Met->Cys: Met->Cys substitution.
8777  UNIMOD_Met__Cys = 100001143,
8778 
8779  /// Met->Asp: Met->Asp substitution.
8780  UNIMOD_Met__Asp = 100001144,
8781 
8782  /// Met->Glu: Met->Glu substitution.
8783  UNIMOD_Met__Glu = 100001145,
8784 
8785  /// Met->Phe: Met->Phe substitution.
8786  UNIMOD_Met__Phe = 100001146,
8787 
8788  /// Met->Gly: Met->Gly substitution.
8789  UNIMOD_Met__Gly = 100001147,
8790 
8791  /// Met->His: Met->His substitution.
8792  UNIMOD_Met__His = 100001148,
8793 
8794  /// Met->Asn: Met->Asn substitution.
8795  UNIMOD_Met__Asn = 100001149,
8796 
8797  /// Met->Pro: Met->Pro substitution.
8798  UNIMOD_Met__Pro = 100001150,
8799 
8800  /// Met->Gln: Met->Gln substitution.
8801  UNIMOD_Met__Gln = 100001151,
8802 
8803  /// Met->Ser: Met->Ser substitution.
8804  UNIMOD_Met__Ser = 100001152,
8805 
8806  /// Met->Trp: Met->Trp substitution.
8807  UNIMOD_Met__Trp = 100001153,
8808 
8809  /// Met->Tyr: Met->Tyr substitution.
8810  UNIMOD_Met__Tyr = 100001154,
8811 
8812  /// Asn->Ala: Asn->Ala substitution.
8813  UNIMOD_Asn__Ala = 100001155,
8814 
8815  /// Asn->Cys: Asn->Cys substitution.
8816  UNIMOD_Asn__Cys = 100001156,
8817 
8818  /// Asn->Glu: Asn->Glu substitution.
8819  UNIMOD_Asn__Glu = 100001157,
8820 
8821  /// Asn->Phe: Asn->Phe substitution.
8822  UNIMOD_Asn__Phe = 100001158,
8823 
8824  /// Asn->Gly: Asn->Gly substitution.
8825  UNIMOD_Asn__Gly = 100001159,
8826 
8827  /// Asn->Met: Asn->Met substitution.
8828  UNIMOD_Asn__Met = 100001160,
8829 
8830  /// Asn->Pro: Asn->Pro substitution.
8831  UNIMOD_Asn__Pro = 100001161,
8832 
8833  /// Asn->Gln: Asn->Gln substitution.
8834  UNIMOD_Asn__Gln = 100001162,
8835 
8836  /// Asn->Arg: Asn->Arg substitution.
8837  UNIMOD_Asn__Arg = 100001163,
8838 
8839  /// Asn->Val: Asn->Val substitution.
8840  UNIMOD_Asn__Val = 100001164,
8841 
8842  /// Asn->Trp: Asn->Trp substitution.
8843  UNIMOD_Asn__Trp = 100001165,
8844 
8845  /// Pro->Cys: Pro->Cys substitution.
8846  UNIMOD_Pro__Cys = 100001166,
8847 
8848  /// Pro->Asp: Pro->Asp substitution.
8849  UNIMOD_Pro__Asp = 100001167,
8850 
8851  /// Pro->Glu: Pro->Glu substitution.
8852  UNIMOD_Pro__Glu = 100001168,
8853 
8854  /// Pro->Phe: Pro->Phe substitution.
8855  UNIMOD_Pro__Phe = 100001169,
8856 
8857  /// Pro->Gly: Pro->Gly substitution.
8858  UNIMOD_Pro__Gly = 100001170,
8859 
8860  /// Pro->Lys: Pro->Lys substitution.
8861  UNIMOD_Pro__Lys = 100001171,
8862 
8863  /// Pro->Met: Pro->Met substitution.
8864  UNIMOD_Pro__Met = 100001172,
8865 
8866  /// Pro->Asn: Pro->Asn substitution.
8867  UNIMOD_Pro__Asn = 100001173,
8868 
8869  /// Pro->Val: Pro->Val substitution.
8870  UNIMOD_Pro__Val = 100001174,
8871 
8872  /// Pro->Trp: Pro->Trp substitution.
8873  UNIMOD_Pro__Trp = 100001175,
8874 
8875  /// Pro->Tyr: Pro->Tyr substitution.
8876  UNIMOD_Pro__Tyr = 100001176,
8877 
8878  /// Gln->Ala: Gln->Ala substitution.
8879  UNIMOD_Gln__Ala = 100001177,
8880 
8881  /// Gln->Cys: Gln->Cys substitution.
8882  UNIMOD_Gln__Cys = 100001178,
8883 
8884  /// Gln->Asp: Gln->Asp substitution.
8885  UNIMOD_Gln__Asp = 100001179,
8886 
8887  /// Gln->Phe: Gln->Phe substitution.
8888  UNIMOD_Gln__Phe = 100001180,
8889 
8890  /// Gln->Gly: Gln->Gly substitution.
8891  UNIMOD_Gln__Gly = 100001181,
8892 
8893  /// Gln->Met: Gln->Met substitution.
8894  UNIMOD_Gln__Met = 100001182,
8895 
8896  /// Gln->Asn: Gln->Asn substitution.
8897  UNIMOD_Gln__Asn = 100001183,
8898 
8899  /// Gln->Ser: Gln->Ser substitution.
8900  UNIMOD_Gln__Ser = 100001184,
8901 
8902  /// Gln->Thr: Gln->Thr substitution.
8903  UNIMOD_Gln__Thr = 100001185,
8904 
8905  /// Gln->Val: Gln->Val substitution.
8906  UNIMOD_Gln__Val = 100001186,
8907 
8908  /// Gln->Trp: Gln->Trp substitution.
8909  UNIMOD_Gln__Trp = 100001187,
8910 
8911  /// Gln->Tyr: Gln->Tyr substitution.
8912  UNIMOD_Gln__Tyr = 100001188,
8913 
8914  /// Arg->Ala: Arg->Ala substitution.
8915  UNIMOD_Arg__Ala = 100001189,
8916 
8917  /// Arg->Asp: Arg->Asp substitution.
8918  UNIMOD_Arg__Asp = 100001190,
8919 
8920  /// Arg->Glu: Arg->Glu substitution.
8921  UNIMOD_Arg__Glu = 100001191,
8922 
8923  /// Arg->Asn: Arg->Asn substitution.
8924  UNIMOD_Arg__Asn = 100001192,
8925 
8926  /// Arg->Val: Arg->Val substitution.
8927  UNIMOD_Arg__Val = 100001193,
8928 
8929  /// Arg->Tyr: Arg->Tyr substitution.
8930  UNIMOD_Arg__Tyr = 100001194,
8931 
8932  /// Arg->Phe: Arg->Phe substitution.
8933  UNIMOD_Arg__Phe = 100001195,
8934 
8935  /// Ser->Asp: Ser->Asp substitution.
8936  UNIMOD_Ser__Asp = 100001196,
8937 
8938  /// Ser->Glu: Ser->Glu substitution.
8939  UNIMOD_Ser__Glu = 100001197,
8940 
8941  /// Ser->His: Ser->His substitution.
8942  UNIMOD_Ser__His = 100001198,
8943 
8944  /// Ser->Lys: Ser->Lys substitution.
8945  UNIMOD_Ser__Lys = 100001199,
8946 
8947  /// Ser->Met: Ser->Met substitution.
8948  UNIMOD_Ser__Met = 100001200,
8949 
8950  /// Ser->Gln: Ser->Gln substitution.
8951  UNIMOD_Ser__Gln = 100001201,
8952 
8953  /// Ser->Val: Ser->Val substitution.
8954  UNIMOD_Ser__Val = 100001202,
8955 
8956  /// Thr->Cys: Thr->Cys substitution.
8957  UNIMOD_Thr__Cys = 100001203,
8958 
8959  /// Thr->Asp: Thr->Asp substitution.
8960  UNIMOD_Thr__Asp = 100001204,
8961 
8962  /// Thr->Glu: Thr->Glu substitution.
8963  UNIMOD_Thr__Glu = 100001205,
8964 
8965  /// Thr->Phe: Thr->Phe substitution.
8966  UNIMOD_Thr__Phe = 100001206,
8967 
8968  /// Thr->Gly: Thr->Gly substitution.
8969  UNIMOD_Thr__Gly = 100001207,
8970 
8971  /// Thr->His: Thr->His substitution.
8972  UNIMOD_Thr__His = 100001208,
8973 
8974  /// Thr->Gln: Thr->Gln substitution.
8975  UNIMOD_Thr__Gln = 100001209,
8976 
8977  /// Thr->Val: Thr->Val substitution.
8978  UNIMOD_Thr__Val = 100001210,
8979 
8980  /// Thr->Trp: Thr->Trp substitution.
8981  UNIMOD_Thr__Trp = 100001211,
8982 
8983  /// Thr->Tyr: Thr->Tyr substitution.
8984  UNIMOD_Thr__Tyr = 100001212,
8985 
8986  /// Val->Cys: Val->Cys substitution.
8987  UNIMOD_Val__Cys = 100001213,
8988 
8989  /// Val->His: Val->His substitution.
8990  UNIMOD_Val__His = 100001214,
8991 
8992  /// Val->Lys: Val->Lys substitution.
8993  UNIMOD_Val__Lys = 100001215,
8994 
8995  /// Val->Asn: Val->Asn substitution.
8996  UNIMOD_Val__Asn = 100001216,
8997 
8998  /// Val->Pro: Val->Pro substitution.
8999  UNIMOD_Val__Pro = 100001217,
9000 
9001  /// Val->Gln: Val->Gln substitution.
9002  UNIMOD_Val__Gln = 100001218,
9003 
9004  /// Val->Arg: Val->Arg substitution.
9005  UNIMOD_Val__Arg = 100001219,
9006 
9007  /// Val->Ser: Val->Ser substitution.
9008  UNIMOD_Val__Ser = 100001220,
9009 
9010  /// Val->Thr: Val->Thr substitution.
9011  UNIMOD_Val__Thr = 100001221,
9012 
9013  /// Val->Trp: Val->Trp substitution.
9014  UNIMOD_Val__Trp = 100001222,
9015 
9016  /// Val->Tyr: Val->Tyr substitution.
9017  UNIMOD_Val__Tyr = 100001223,
9018 
9019  /// Trp->Ala: Trp->Ala substitution.
9020  UNIMOD_Trp__Ala = 100001224,
9021 
9022  /// Trp->Asp: Trp->Asp substitution.
9023  UNIMOD_Trp__Asp = 100001225,
9024 
9025  /// Trp->Glu: Trp->Glu substitution.
9026  UNIMOD_Trp__Glu = 100001226,
9027 
9028  /// Trp->Phe: Trp->Phe substitution.
9029  UNIMOD_Trp__Phe = 100001227,
9030 
9031  /// Trp->His: Trp->His substitution.
9032  UNIMOD_Trp__His = 100001228,
9033 
9034  /// Trp->Lys: Trp->Lys substitution.
9035  UNIMOD_Trp__Lys = 100001229,
9036 
9037  /// Trp->Met: Trp->Met substitution.
9038  UNIMOD_Trp__Met = 100001230,
9039 
9040  /// Trp->Asn: Trp->Asn substitution.
9041  UNIMOD_Trp__Asn = 100001231,
9042 
9043  /// Trp->Pro: Trp->Pro substitution.
9044  UNIMOD_Trp__Pro = 100001232,
9045 
9046  /// Trp->Gln: Trp->Gln substitution.
9047  UNIMOD_Trp__Gln = 100001233,
9048 
9049  /// Trp->Thr: Trp->Thr substitution.
9050  UNIMOD_Trp__Thr = 100001234,
9051 
9052  /// Trp->Val: Trp->Val substitution.
9053  UNIMOD_Trp__Val = 100001235,
9054 
9055  /// Trp->Tyr: Trp->Tyr substitution.
9056  UNIMOD_Trp__Tyr = 100001236,
9057 
9058  /// Tyr->Ala: Tyr->Ala substitution.
9059  UNIMOD_Tyr__Ala = 100001237,
9060 
9061  /// Tyr->Glu: Tyr->Glu substitution.
9062  UNIMOD_Tyr__Glu = 100001238,
9063 
9064  /// Tyr->Gly: Tyr->Gly substitution.
9065  UNIMOD_Tyr__Gly = 100001239,
9066 
9067  /// Tyr->Lys: Tyr->Lys substitution.
9068  UNIMOD_Tyr__Lys = 100001240,
9069 
9070  /// Tyr->Met: Tyr->Met substitution.
9071  UNIMOD_Tyr__Met = 100001241,
9072 
9073  /// Tyr->Pro: Tyr->Pro substitution.
9074  UNIMOD_Tyr__Pro = 100001242,
9075 
9076  /// Tyr->Gln: Tyr->Gln substitution.
9077  UNIMOD_Tyr__Gln = 100001243,
9078 
9079  /// Tyr->Arg: Tyr->Arg substitution.
9080  UNIMOD_Tyr__Arg = 100001244,
9081 
9082  /// Tyr->Thr: Tyr->Thr substitution.
9083  UNIMOD_Tyr__Thr = 100001245,
9084 
9085  /// Tyr->Val: Tyr->Val substitution.
9086  UNIMOD_Tyr__Val = 100001246,
9087 
9088  /// Tyr->Trp: Tyr->Trp substitution.
9089  UNIMOD_Tyr__Trp = 100001247,
9090 
9091  /// Tyr->Xle: Tyr->Leu/Ile substitution.
9092  UNIMOD_Tyr__Xle = 100001248,
9093 
9094  /// AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.
9095  UNIMOD_AHA_SS = 100001249,
9096 
9097  /// AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.
9098  UNIMOD_AHA_SS_CAM = 100001250,
9099 
9100  /// Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.
9102 
9103  /// Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.
9105 
9106  /// 2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.
9108 
9109  /// Saligenin: O-toluene.
9110  UNIMOD_Saligenin = 100001254,
9111 
9112  /// Cresylphosphate: O-toluyl-phosphorylation.
9114 
9115  /// CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.
9117 
9118  /// Ub-Br2: Ub Bromide probe addition.
9119  UNIMOD_Ub_Br2 = 100001257,
9120 
9121  /// Ub-VME: Ubiquitin vinylmethylester.
9122  UNIMOD_Ub_VME = 100001258,
9123 
9124  /// Ub-amide: Ub amide probe addition.
9125  UNIMOD_Ub_amide = 100001260,
9126 
9127  /// Ub-fluorescein: Ub Fluorescein probe addition.
9129 
9130  /// 2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.
9132 
9133  /// Gly: Addition of Glycine.
9134  UNIMOD_Gly = 100001263,
9135 
9136  /// pupylation: Addition of GGE.
9137  UNIMOD_pupylation = 100001264,
9138 
9139  /// Label:13C(4): 13C4 Methionine label.
9140  UNIMOD_Label_13C_4_ = 100001266,
9141 
9142  /// Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.
9144 
9145  /// HCysThiolactone: N-Homocysteine thiolactone.
9147 
9148  /// HCysteinyl: S-homocysteinylation.
9149  UNIMOD_HCysteinyl = 100001271,
9150 
9151  /// UgiJoullie: Side reaction of HisTag.
9152  UNIMOD_UgiJoullie = 100001276,
9153 
9154  /// Dipyridyl: Cys modified with dipy ligand.
9155  UNIMOD_Dipyridyl = 100001277,
9156 
9157  /// Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.
9158  UNIMOD_Furan = 100001278,
9159 
9160  /// Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction.
9161  UNIMOD_Difuran = 100001279,
9162 
9163  /// BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.
9165 
9166  /// UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.
9168 
9169  /// UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid.
9171 
9172  /// IMEHex(2)NeuAc: Glycosylation with IME linked Hex(2) NeuAc.
9174 
9175  /// Arg-loss: Loss of arginine due to transpeptidation.
9176  UNIMOD_Arg_loss = 100001287,
9177 
9178  /// Arg: Addition of arginine due to transpeptidation.
9179  UNIMOD_Arg = 100001288,
9180 
9181  /// Butyryl: Butyryl.
9182  UNIMOD_Butyryl = 100001289,
9183 
9184  /// Dicarbamidomethyl: Double Carbamidomethylation.
9186 
9187  /// Dimethyl:2H(6): Dimethyl-Medium.
9189 
9190  /// GGQ: SUMOylation leaving GlyGlyGln.
9191  UNIMOD_GGQ = 100001292,
9192 
9193  /// QTGG: SUMOylation leaving GlnThrGlyGly.
9194  UNIMOD_QTGG = 100001293,
9195 
9196  /// Label:13C(3): 13C3 label for SILAC.
9197  UNIMOD_Label_13C_3_ = 100001296,
9198 
9199  /// Label:13C(3)15N(1): 13C3 15N1 label for SILAC.
9201 
9202  /// Label:13C(4)15N(1): 13C4 15N1 label for SILAC.
9204 
9205  /// Label:2H(10): 2H(10) label.
9206  UNIMOD_Label_2H_10_ = 100001299,
9207 
9208  /// Label:2H(4)13C(1): Label:2H(4)13C(1).
9210 
9211  /// Lys: Addition of lysine due to transpeptidation.
9212  UNIMOD_Lys = 100001301,
9213 
9214  /// mTRAQ:13C(6)15N(2): MTRAQ heavy.
9216 
9217  /// NeuAc: N-acetyl neuraminic acid.
9218  UNIMOD_NeuAc = 100001303,
9219 
9220  /// NeuGc: N-glycoyl neuraminic acid.
9221  UNIMOD_NeuGc = 100001304,
9222 
9223  /// Propyl: Propyl.
9224  UNIMOD_Propyl = 100001305,
9225 
9226  /// Propyl:2H(6): Propyl:2H(6).
9227  UNIMOD_Propyl_2H_6_ = 100001306,
9228 
9229  /// Propiophenone: Propiophenone.
9231 
9232  /// Delta:H(6)C(3)O(1): Reduced acrolein addition +58.
9234 
9235  /// Delta:H(8)C(6)O(1): Reduced acrolein addition +96.
9237 
9238  /// biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.
9240 
9241  /// MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.
9243 
9244  /// EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.
9246 
9247  /// Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.
9249 
9250  /// DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.
9252 
9253  /// DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.
9254  UNIMOD_DiLeu4plex = 100001322,
9255 
9256  /// DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.
9258 
9259  /// DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.
9261 
9262  /// NEMsulfur: N-ethylmaleimideSulfur.
9263  UNIMOD_NEMsulfur = 100001326,
9264 
9265  /// SulfurDioxide: SulfurDioxide.
9267 
9268  /// NEMsulfurWater: N-ethylmaleimideSulfurWater.
9270 
9271  /// bisANS-sulfonates: BisANS with loss of both sulfonates.
9273 
9274  /// DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).
9275  UNIMOD_DNCB_hapten = 100001331,
9276 
9277  /// Myristoyl+Delta:H(18)C(12)N(6)O(4): Myristic acid analogue.
9279 
9280  /// Biotin:Thermo-21911: Biotin-PEG11-maleimide.
9282 
9283  /// iodoTMT: Native iodoacetyl Tandem Mass Tag®.
9284  UNIMOD_iodoTMT = 100001341,
9285 
9286  /// iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.
9287  UNIMOD_iodoTMT6plex = 100001342,
9288 
9289  /// Gluconoylation: Gluconoylation.
9291 
9292  /// Phosphogluconoylation: Phosphogluconoylation.
9294 
9295  /// PS_Hapten: Reaction with phenyl salicylate (PS).
9296  UNIMOD_PS_Hapten = 100001345,
9297 
9298  /// unit: A unit of measurement is a standardized quantity of a physical quality.
9299  UO_unit = 200000000,
9300 
9301  /// length unit: A unit which is a standard measure of the distance between two points.
9302  UO_length_unit = 200000001,
9303 
9304  /// mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object.
9305  UO_mass_unit = 200000002,
9306 
9307  /// time unit: A unit which is a standard measure of the dimension in which events occur in sequence.
9308  UO_time_unit = 200000003,
9309 
9310  /// electric current unit: A unit which is a standard measure of the flow of electric charge.
9312 
9313  /// temperature unit: A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter.
9314  UO_temperature_unit = 200000005,
9315 
9316  /// substance unit: A unit which is a standardised quantity of an element or compound with uniform composition.
9317  UO_substance_unit = 200000006,
9318 
9319  /// luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted by a light source in a particular direction.
9321 
9322  /// meter: A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.
9323  UO_meter = 200000008,
9324 
9325  /// kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.
9326  UO_kilogram = 200000009,
9327 
9328  /// second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.
9329  UO_second = 200000010,
9330 
9331  /// ampere: An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length.
9332  UO_ampere = 200000011,
9333 
9334  /// kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water.
9335  UO_kelvin = 200000012,
9336 
9337  /// mole: A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12.
9338  UO_mole = 200000013,
9339 
9340  /// candela: A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian.
9341  UO_candela = 200000014,
9342 
9343  /// centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
9344  UO_centimeter = 200000015,
9345 
9346  /// millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
9347  UO_millimeter = 200000016,
9348 
9349  /// micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.
9350  UO_micrometer = 200000017,
9351 
9352  /// nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.
9353  UO_nanometer = 200000018,
9354 
9355  /// angstrom: A length unit which is equal to 10 [-10] m.
9356  UO_angstrom = 200000019,
9357 
9358  /// picometer: A length unit which is equal to 10^[-12] m.
9359  UO_picometer = 200000020,
9360 
9361  /// gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
9362  UO_gram = 200000021,
9363 
9364  /// milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
9365  UO_milligram = 200000022,
9366 
9367  /// microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
9368  UO_microgram = 200000023,
9369 
9370  /// nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.
9371  UO_nanogram = 200000024,
9372 
9373  /// picogram: A mass unit which is equal to 10^[-12] g.
9374  UO_picogram = 200000025,
9375 
9376  /// femtogram: A mass unit which is equal to 10^[-15] g.
9377  UO_femtogram = 200000026,
9378 
9379  /// degree celsius: A temperature unit which is equal to one Kelvin degree. However, they have their zeros at different points. The Centigrade scale has its zero at 273.15 K.
9380  UO_degree_celsius = 200000027,
9381 
9382  /// millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.
9383  UO_millisecond = 200000028,
9384 
9385  /// microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.
9386  UO_microsecond = 200000029,
9387 
9388  /// picosecond: A time unit which is equal to 10^[-12] s.
9389  UO_picosecond = 200000030,
9390 
9391  /// minute: A time unit which is equal to 60 seconds.
9392  UO_minute = 200000031,
9393 
9394  /// hour: A time unit which is equal to 3600 seconds or 60 minutes.
9395  UO_hour = 200000032,
9396 
9397  /// day: A time unit which is equal to 24 hours.
9398  UO_day = 200000033,
9399 
9400  /// week: A time unit which is equal to 7 days.
9401  UO_week = 200000034,
9402 
9403  /// month: A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days.
9404  UO_month = 200000035,
9405 
9406  /// year: A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days.
9407  UO_year = 200000036,
9408 
9409  /// milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3] A.
9410  UO_milliampere = 200000037,
9411 
9412  /// microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6] A.
9413  UO_microampere = 200000038,
9414 
9415  /// micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.
9416  UO_micromole = 200000039,
9417 
9418  /// millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.
9419  UO_millimole = 200000040,
9420 
9421  /// nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.
9422  UO_nanomole = 200000041,
9423 
9424  /// picomole: A substance unit equal to 10^[-12] mol.
9425  UO_picomole = 200000042,
9426 
9427  /// femtomole: A substance unit equal to 10^[-15] mol.
9428  UO_femtomole = 200000043,
9429 
9430  /// attomole: A substance unit equal to 10^[-18] mol.
9431  UO_attomole = 200000044,
9432 
9433  /// base unit: A unit which is one of a particular measure to which all measures of that type can be related.
9434  UO_base_unit = 200000045,
9435 
9436  /// derived unit: A unit which is derived from base units.
9438 
9439  /// area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface.
9440  UO_area_unit = 200000047,
9441 
9442  /// acceleration unit: A unit which is a standard measure of the rate of change of velocity in either speed or direction.
9444 
9445  /// angular velocity unit: A unit which is a standard measure of the rate of angular movement about an axis; the angle rotated in a given time.
9447 
9448  /// angular acceleration unit: A unit which is a standard measure of the rate of change of angular velocity.
9450 
9451  /// concentration unit: A unit which represents a standard measurement of how much of a given substance there is mixed with another substance.
9453 
9454  /// mass density unit: A density unit which is a standard measure of the mass of a substance in a given volume.
9456 
9457  /// luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given area.
9458  UO_luminance_unit = 200000053,
9459 
9460  /// area density unit: A density unit which is a standard measure of the mass exerting an influence on a given area.
9462 
9463  /// molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing 6.02 x 1023 atoms or molecules.
9464  UO_molar_mass_unit = 200000055,
9465 
9466  /// molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance containing 6.02 x 1023 atoms or molecules.
9468 
9469  /// momentum unit: A unit which is a standard measure of the quantity of motion measured by the product of mass and velocity.
9470  UO_momentum_unit = 200000057,
9471 
9472  /// rotational frequency unit: A unit which is a standard measure of the number of rotations in a given time.
9474 
9475  /// specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (the reciprocal of density).
9477 
9478  /// speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in the same physical units of measurement as velocity, but does not contain the element of direction that velocity has. Speed is thus the magnitude component of velocity.
9480 
9481  /// unit of molarity: A concentration unit which is a standard measure of the number of moles of a given substance per liter of solution.
9482  UO_unit_of_molarity = 200000061,
9483 
9484  /// molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L).
9485  UO_molar = 200000062,
9486 
9487  /// millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.
9488  UO_millimolar = 200000063,
9489 
9490  /// micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.
9491  UO_micromolar = 200000064,
9492 
9493  /// nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M.
9494  UO_nanomolar = 200000065,
9495 
9496  /// picomolar: A unit of molarity which is equal to 10^[-12] M.
9497  UO_picomolar = 200000066,
9498 
9499  /// unit of molality: A concentration unit which is a standard measure of the number of moles of a given substance per kilogram of solvent.
9500  UO_unit_of_molality = 200000067,
9501 
9502  /// molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg).
9503  UO_molal = 200000068,
9504 
9505  /// millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m.
9506  UO_millimolal = 200000069,
9507 
9508  /// micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m.
9509  UO_micromolal = 200000070,
9510 
9511  /// nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m.
9512  UO_nanomolal = 200000071,
9513 
9514  /// picomolal: A molality unit which is equal to 10^[-12] m.
9515  UO_picomolal = 200000072,
9516 
9517  /// femtomolar: A unit of molarity which is equal to 10^[-15] M.
9518  UO_femtomolar = 200000073,
9519 
9520  /// unit of normality: A unit of concentration which highlights the chemical nature of salts.
9522 
9523  /// normal: A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule.
9524  UO_normal = 200000075,
9525 
9526  /// mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution.
9527  UO_mole_fraction = 200000076,
9528 
9529  /// meter per second per second: An acceleration unit which is equal to the acceleration an object changing its velocity by 1meter/s over a time period that equals one second.
9531 
9532  /// radian per second per second: An angular unit acceleration which is equal to the angular acceleration of an object changing its angular velocity by 1rad/s over a time period that equals one second.
9534 
9535  /// radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minute).
9537 
9538  /// square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter long.
9539  UO_square_meter = 200000080,
9540 
9541  /// square centimeter: An area unit which is equal to one thousand of square meter or 10^[-3] m^[2].
9543 
9544  /// square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2].
9546 
9547  /// kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in cubic meters.
9549 
9550  /// gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters.
9552 
9553  /// candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radiating from a surface whose area is one square meter.
9555 
9556  /// kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in meters squared.
9558 
9559  /// kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound.
9561 
9562  /// gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound.
9563  UO_gram_per_mole = 200000088,
9564 
9565  /// cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a substance in the form of a solid, liquid, or gas.
9567 
9568  /// cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one mole of a substance in the form of a solid, liquid, or gas.
9570 
9571  /// kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass object with a speed of one meter per second.
9573 
9574  /// turns per second: A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second.
9575  UO_turns_per_second = 200000092,
9576 
9577  /// cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by one kilogram of a particular substance.
9579 
9580  /// meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter distance in one second.
9581  UO_meter_per_second = 200000094,
9582 
9583  /// volume unit: A unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas.
9584  UO_volume_unit = 200000095,
9585 
9586  /// cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length. One cubic meter equals to 1000 liters.
9587  UO_cubic_meter = 200000096,
9588 
9589  /// cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml.
9590  UO_cubic_centimeter = 200000097,
9591 
9592  /// milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
9593  UO_milliliter = 200000098,
9594 
9595  /// liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.
9596  UO_liter = 200000099,
9597 
9598  /// cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L.
9599  UO_cubic_decimeter = 200000100,
9600 
9601  /// microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
9602  UO_microliter = 200000101,
9603 
9604  /// nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.
9605  UO_nanoliter = 200000102,
9606 
9607  /// picoliter: A volume unit which is equal to 10^[-12] L.
9608  UO_picoliter = 200000103,
9609 
9610  /// femtoliter: A volume unit which is equal to 10^[-15] L.
9611  UO_femtoliter = 200000104,
9612 
9613  /// frequency unit: A unit which is a standard measure of the number of repetitive actions in a particular time.
9614  UO_frequency_unit = 200000105,
9615 
9616  /// hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second.
9617  UO_hertz = 200000106,
9618 
9619  /// force unit: A unit which is a standard measure of the force is applied when a mass is accelerated.
9620  UO_force_unit = 200000107,
9621 
9622  /// newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass of 1 Kg in the direction of the force.
9623  UO_newton = 200000108,
9624 
9625  /// pressure unit: A unit which is a standard measure of the force applied to a given area.
9626  UO_pressure_unit = 200000109,
9627 
9628  /// pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 newton spread over a surface of 1 m^[2].
9629  UO_pascal = 200000110,
9630 
9631  /// energy unit: A unit which is a standard measure of the work done by a certain force (gravitational, electric, magnetic, force of inertia, etc).
9632  UO_energy_unit = 200000111,
9633 
9634  /// joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object 1 meter in the direction of the force.
9635  UO_joule = 200000112,
9636 
9637  /// power unit: A unit which is a standard measure power or the rate of doing work.
9638  UO_power_unit = 200000113,
9639 
9640  /// watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per second.
9641  UO_watt = 200000114,
9642 
9643  /// illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area.
9644  UO_illuminance_unit = 200000115,
9645 
9646  /// lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 m^[2].
9647  UO_lux = 200000116,
9648 
9649  /// luminous flux unit: A unit which is a standard measure of the flow of radiant energy.
9651 
9652  /// lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point source of 1 candela.
9653  UO_lumen = 200000118,
9654 
9655  /// catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst.
9657 
9658  /// katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second, such as the amount of an enzyme needed to transform one mole of substrate per second.
9659  UO_katal = 200000120,
9660 
9661  /// angle unit: A unit which is a standard measure of the figure or space formed by the junction of two lines or planes.
9662  UO_angle_unit = 200000121,
9663 
9664  /// plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the same plane.
9665  UO_plane_angle_unit = 200000122,
9666 
9667  /// radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc equal in length to the radius of the circle, approximately 57 degrees 17 minutes and 44.6 seconds.
9668  UO_radian = 200000123,
9669 
9670  /// solid angle unit: A unit which is a standard measure of the angle formed by three or more planes intersecting at a common point.
9671  UO_solid_angle_unit = 200000124,
9672 
9673  /// steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere by an area on the surface of the sphere that is equal to the radius squared.
9674  UO_steradian = 200000125,
9675 
9676  /// radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radiation source as well as the amount of radiation absorbed or deposited in a specific material by a radiation source.
9677  UO_radiation_unit = 200000127,
9678 
9679  /// activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disintegration) rate of a radioactive substance.
9681 
9682  /// absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation to unit mass of matter such as tissue.
9684 
9685  /// dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its biological effect.
9687 
9688  /// exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radiation to ionize air and thereby create electric charges which can be collected and measured.
9689  UO_exposure_unit = 200000131,
9690 
9691  /// becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second (dps).
9692  UO_becquerel = 200000132,
9693 
9694  /// curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which there are 3.7 x 10^[10] atom disintegration per second (dps).
9695  UO_curie = 200000133,
9696 
9697  /// gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.
9698  UO_gray = 200000134,
9699 
9700  /// rad: An absorbed dose unit which is equal to 0.01 gray (Gy).
9701  UO_rad = 200000135,
9702 
9703  /// roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive and negative charges of one electrostatic unit of charge in 1 cm^[3] of air at standard temperature and pressure (STP). This corresponds to the generation of approximately 2.0810^[9] ion pairs.
9704  UO_roentgen = 200000136,
9705 
9706  /// sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.
9707  UO_sievert = 200000137,
9708 
9709  /// millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv.
9710  UO_millisievert = 200000138,
9711 
9712  /// microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv.
9713  UO_microsievert = 200000139,
9714 
9715  /// Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one sievert or 1 Sv. 1 Sv is equal to 100 rem.
9717 
9718  /// microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy.
9719  UO_microgray = 200000141,
9720 
9721  /// milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy.
9722  UO_milligray = 200000142,
9723 
9724  /// nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] Gy.
9725  UO_nanogray = 200000143,
9726 
9727  /// nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 10^[-9] Sv.
9728  UO_nanosievert = 200000144,
9729 
9730  /// millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-3] Ci.
9731  UO_millicurie = 200000145,
9732 
9733  /// microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6] Ci.
9734  UO_microcurie = 200000146,
9735 
9736  /// disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per minute or there is one atom disintegration per minute.
9738 
9739  /// counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissions produced by ionizing radiation in one minute.
9741 
9742  /// nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s.
9743  UO_nanosecond = 200000150,
9744 
9745  /// century: A time unit which is equal to 100 years.
9746  UO_century = 200000151,
9747 
9748  /// half life: A time unit which represents the period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration.
9749  UO_half_life = 200000152,
9750 
9751  /// foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 foot^[2]. One footcandle is equal to 10.76 lux.
9752  UO_foot_candle = 200000153,
9753 
9754  /// irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a surface, per unit area.
9755  UO_irradiance_unit = 200000154,
9756 
9757  /// watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one square meter surface area.
9759 
9760  /// einstein per square meter per second: An irradiance unit which is equal to one einstein per square meter per second. One einstein is one mole of photons, regardless of their frequency. Therefore, the number of photons in an einstein is Avogadro's number.
9762 
9763  /// light unit: A unit which is a standard measure of the intensity of light.
9764  UO_light_unit = 200000157,
9765 
9766  /// watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power incident per steradian solid angle per one square meter projected area of the source, as viewed from the given direction.
9768 
9769  /// radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiation.
9771 
9772  /// microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per square meter per second or 10^[-6] microeinstein/sm^[2].
9774 
9775  /// radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through space or through a material medium in the form of electromagnetic waves.
9776  UO_radiance_unit = 200000161,
9777 
9778  /// watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second cubed per steradian.
9780 
9781  /// mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture.
9782  UO_mass_percentage = 200000163,
9783 
9784  /// mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture.
9786 
9787  /// volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution.
9789 
9790  /// parts per notation unit: A dimensionless concentration notation which describes the amount of one substance in another. It is the ratio of the amount of the substance of interest to the amount of that substance plus the amount of the substance.
9792 
9793  /// parts per hundred: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 100 regardless of the units of measure as long as they are the same.
9795 
9796  /// parts per thousand: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1000 regardless of the units of measure as long as they are the same.
9798 
9799  /// parts per million: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[6].
9801 
9802  /// parts per billion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure as long as they are the same or 1 part in 10^[9].
9804 
9805  /// parts per trillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[12].
9807 
9808  /// parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[15].
9810 
9811  /// gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the volume in milliliter.
9813 
9814  /// kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in liters.
9816 
9817  /// gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volume in liters.
9818  UO_gram_per_liter = 200000175,
9819 
9820  /// milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters.
9822 
9823  /// unit per volume unit: A concentration unit which is a standard measure of the number of units, as an agreed arbitrary amount, of a given substance per a specific volume of solution.
9825 
9826  /// unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter.
9828 
9829  /// unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter.
9830  UO_unit_per_liter = 200000179,
9831 
9832  /// mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in a given volume (density).
9834 
9835  /// enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the conversion of 1 micro mole of substrate per minute.
9836  UO_enzyme_unit = 200000181,
9837 
9838  /// density unit: A unit which is a standard measure of the influence exerted by some mass.
9839  UO_density_unit = 200000182,
9840 
9841  /// linear density unit: A density unit which is a standard measure of the mass exerting an influence on a one-dimensional object.
9843 
9844  /// kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided by one meter.
9846 
9847  /// degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad.
9848  UO_degree = 200000185,
9849 
9850  /// dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a numerical number without any units.
9852 
9853  /// percent: A dimensionless ratio unit which denotes numbers as fractions of 100.
9854  UO_percent = 200000187,
9855 
9856  /// pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3.14159 which is the ratio of a circle's circumference to its diameter in Euclidean geometry.
9857  UO_pi = 200000188,
9858 
9859  /// count unit: A dimensionless unit which denotes a simple count of things.
9860  UO_count_unit = 200000189,
9861 
9862  /// ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another.
9863  UO_ratio = 200000190,
9864 
9865  /// fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denominator).
9866  UO_fraction = 200000191,
9867 
9868  /// molecule count: A dimensionless count unit which denotes the number of molecules.
9869  UO_molecule_count = 200000192,
9870 
9871  /// purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial.
9873 
9874  /// confluence percentage: A dimensionless percent unit which denotes the density of an attached or monolayer culture (e.g., cell culture).
9876 
9877  /// degree fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.
9879 
9880  /// pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+).
9881  UO_pH = 200000196,
9882 
9883  /// liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogram of a particular substance.
9885 
9886  /// milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogram or 10^[-3] l/kg.
9888 
9889  /// microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogram or 10^[-6] l/kg.
9891 
9892  /// cell concentration unit: A concentration unit which denotes the average cell number in a given volume.
9894 
9895  /// cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 milliliter.
9897 
9898  /// catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amount of the action of a catalyst in a given volume.
9900 
9901  /// katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter.
9903 
9904  /// katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter.
9905  UO_katal_per_liter = 200000204,
9906 
9907  /// volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solute in the total volume of the resulting solution.
9909 
9910  /// milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution.
9912 
9913  /// milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution.
9915 
9916  /// gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters.
9918 
9919  /// deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.
9920  UO_deciliter = 200000209,
9921 
9922  /// colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers.
9924 
9925  /// plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given volume.
9927 
9928  /// colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a given volume.
9930 
9931  /// colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers in one milliliter.
9933 
9934  /// plaque forming unit per volume: A concentration unit which a measure of plague forming units in a given volume.
9936 
9937  /// plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in one milliliter.
9939 
9940  /// disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second.
9942 
9943  /// electric potential difference unit: A unit which is a standard measure of the work done per unit charge as a charge is moved between two points in an electric field.
9945 
9946  /// volt: An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy.
9947  UO_volt = 200000218,
9948 
9949  /// electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons.
9950  UO_electric_charge = 200000219,
9951 
9952  /// coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of 1 ampere in 1 second.
9953  UO_coulomb = 200000220,
9954 
9955  /// dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state.
9956  UO_dalton = 200000221,
9957 
9958  /// kilodalton: A mass unit which is equal to one thousand daltons.
9959  UO_kilodalton = 200000222,
9960 
9961  /// watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt load drawing power for one hour.
9962  UO_watt_hour = 200000223,
9963 
9964  /// kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.
9965  UO_kilowatt_hour = 200000224,
9966 
9967  /// magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of the strength and the extent of a magnetic field.
9969 
9970  /// weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn of wire for an interval of one second will induce an electromotive force of one volt.
9971  UO_weber = 200000226,
9972 
9973  /// magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field.
9975 
9976  /// tesla: A magnetic flux density unit which is equal to one weber per square meter.
9977  UO_tesla = 200000228,
9978 
9979  /// volt-hour: A magnetic flux unit which is equal to 3600 Wb.
9980  UO_volt_hour = 200000229,
9981 
9982  /// kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.
9983  UO_kilovolt_hour = 200000230,
9984 
9985  /// information unit: A unit which is a standard measure of the amount of information.
9986  UO_information_unit = 200000231,
9987 
9988  /// bit: An information unit which refers to a digit in the binary numeral system, which consists of base 2 digits (ie there are only 2 possible values: 0 or 1).
9989  UO_bit = 200000232,
9990 
9991  /// byte: An information unit which is equal to 8 bits.
9992  UO_byte = 200000233,
9993 
9994  /// kilobyte: An information unit which is equal to 1000 bytes.
9995  UO_kilobyte = 200000234,
9996 
9997  /// megabyte: An information unit which is equal to 1000 kB.
9998  UO_megabyte = 200000235,
9999 
10000  /// image resolution unit: An information unit which is a standard measure of the detail an image holds.
10002 
10003  /// chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial detail in an image.
10005 
10006  /// dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast available in a pixel.
10008 
10009  /// spatial resolution unit: An image resolution unit which is a standard measure of the way luminance and chrominance may be sampled at different levels.
10011 
10012  /// dots per inch: A spatial resolution unit which is a standard measure of the printing resolution, in particular the number of individual dots of ink a printer or toner can produce within a linear one-inch space.
10013  UO_dots_per_inch = 200000240,
10014 
10015  /// micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.
10016  UO_micron_pixel = 200000241,
10017 
10018  /// pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a computer display, related to the size of the display in inches and the total number of pixels in the horizontal and vertical directions.
10019  UO_pixels_per_inch = 200000242,
10020 
10021  /// pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels in one millimeter length or width of a digital image divided by the physical length or width of a printed image.
10023 
10024  /// base pair: A count unit which contains one nucleotide.
10025  UO_base_pair = 200000244,
10026 
10027  /// kibibyte: An information unit which is equal to 1024 B.
10028  UO_kibibyte = 200000245,
10029 
10030  /// mebibyte: An information unit which is equal to 1024 KiB.
10031  UO_mebibyte = 200000246,
10032 
10033  /// millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3] V.
10034  UO_millivolt = 200000247,
10035 
10036  /// kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V.
10037  UO_kilovolt = 200000248,
10038 
10039  /// microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6] V.
10040  UO_microvolt = 200000249,
10041 
10042  /// nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12] V.
10043  UO_nanovolt = 200000250,
10044 
10045  /// picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12] V.
10046  UO_picovolt = 200000251,
10047 
10048  /// megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V.
10049  UO_megavolt = 200000252,
10050 
10051  /// surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces.
10053 
10054  /// newton per meter: A surface tension unit which is equal to one newton per meter.
10055  UO_newton_per_meter = 200000254,
10056 
10057  /// dyne per cm: A surface tension unit which is equal to one dyne per centimeter.
10058  UO_dyne_per_cm = 200000255,
10059 
10060  /// viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow.
10061  UO_viscosity_unit = 200000256,
10062 
10063  /// pascal second: A viscosity unit which is equal to one pascale per second.
10064  UO_pascal_second = 200000257,
10065 
10066  /// poise: A viscosity unit which is equal to one dyne second per square centimeter.
10067  UO_poise = 200000258,
10068 
10069  /// decibel: An ratio unit which is an indicator of sound power per unit area.
10070  UO_decibel = 200000259,
10071 
10072  /// effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that a non-uniform radiation dose has on a human.
10074 
10075  /// conduction unit: A unit which represents a standard measurement of the transmission of an entity through a medium.
10076  UO_conduction_unit = 200000261,
10077 
10078  /// electrical conduction unit: A unit which represents a standard measurement of the movement of electrically charged particles through a transmission medium (electrical conductor).
10080 
10081  /// heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of thermal energy through matter, from a region of higher temperature to a region of lower temperature.
10083 
10084  /// siemens: An electrical conduction unit which is equal to A/V.
10085  UO_siemens = 200000264,
10086 
10087  /// watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin.
10089 
10090  /// electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J.
10091  UO_electronvolt = 200000266,
10092 
10093  /// electric field strength unit: The electric field strength is a unit which is a measure of the potential difference between two points some distance apart.
10095 
10096  /// volt per meter: The volt per meter is a unit of electric field strength equal to the a potential difference of 1 volt existing between two points that are 1 meter apart.
10097  UO_volt_per_meter = 200000268,
10098 
10099  /// absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light through a partially absorbing substance, defined as -log10(I/I_0) where I = transmitted light and I_0 = incident light.
10100  UO_absorbance_unit = 200000269,
10101 
10102  /// volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes through a given surface per unit time .
10104 
10105  /// microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute.
10107 
10108  /// millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep in mercury at zero degrees centigrade on Earth.
10110 
10111  /// milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in liters.
10113 
10114  /// microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters.
10116 
10117  /// nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided by the volume in milliliters.
10119 
10120  /// amount per container: A concentration unit which is a standard measure of the amount of a substance in a given container.
10122 
10123  /// ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/container upon which the substance is deposited.
10124  UO_ug_disk = 200000277,
10125 
10126  /// nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/container upon which the substance is deposited.
10127  UO_nmole_disk = 200000278,
10128 
10129  /// milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter.
10131 
10132  /// rate unit: A unit which represents a standard measurement occurrence of a process per unit time.
10133  UO_rate_unit = 200000280,
10134 
10135  /// count per nanomolar second: A rate unit which is equal to one over one nanomolar second.
10137 
10138  /// count per molar second: A rate unit which is equal to one over one molar second.
10140 
10141  /// kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in hectares..
10143 
10144  /// count per nanomolar: A rate unit which is equal to one over one nanomolar.
10146 
10147  /// count per molar: A rate unit which is equal to one over one molar.
10148  UO_count_per_molar = 200000285,
10149 
10150  /// microgram per liter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters.
10151  UO_microgram_per_liter = 200000301
10152 }; // enum CVID
10153 
10154 
10155 /// Information about an ontology or CV source and a short 'lookup' tag to refer to.
10157 {
10158  /// the short label to be used as a reference tag with which to refer to this particular Controlled Vocabulary source description (e.g., from the cvLabel attribute, in CVParamType elements).
10159  std::string id;
10160 
10161  /// the URI for the resource.
10162  std::string URI;
10163 
10164  /// the usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).
10165  std::string fullName;
10166 
10167  /// the version of the CV from which the referred-to terms are drawn.
10168  std::string version;
10169 
10170  /// returns true iff id, URI, fullName, and version are all pairwise equal
10171  bool operator==(const CV& that) const;
10172 
10173  /// returns ture iff id, URI, fullName, and version are all empty
10174  bool empty() const;
10175 };
10176 
10177 
10178 /// returns a CV object for the specified namespace (prefix);
10179 /// currently supported namespaces are: MS UO
10180 PWIZ_API_DECL const CV& cv(const std::string& prefix);
10181 
10182 
10183 /// structure for holding CV term info
10185 {
10186  CVID cvid;
10187  std::string id;
10188  std::string name;
10189  std::string def;
10191 
10192  typedef std::vector<CVID> id_list;
10195  std::multimap<std::string, CVID> otherRelations;
10196  std::vector<std::string> exactSynonyms;
10197  std::multimap<std::string, std::string> propertyValues;
10198 
10199  CVTermInfo() : cvid((CVID)-1) {}
10200  const std::string& shortName() const;
10201  std::string prefix() const;
10202 };
10203 
10204 
10205 /// returns CV term info for the specified CVID
10206 PWIZ_API_DECL const CVTermInfo& cvTermInfo(CVID cvid);
10207 
10208 
10209 /// returns CV term info for the specified id (accession number)
10210 PWIZ_API_DECL const CVTermInfo& cvTermInfo(const char* id);
10211 PWIZ_API_DECL const CVTermInfo& cvTermInfo(const std::string& id);
10212 
10213 
10214 /// returns true iff child IsA parent in the CV
10215 PWIZ_API_DECL bool cvIsA(CVID child, CVID parent);
10216 
10217 
10218 /// returns vector of all valid CVIDs
10219 PWIZ_API_DECL const std::vector<CVID>& cvids();
10220 
10221 
10222 } // namespace cv
10223 } // namespace pwiz
10224 
10225 
10226 #endif // _CV_HPP_
10227 
10228 
std::string id
Definition: cv.hpp:10187
UO_liter_per_kilogram
liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogra...
Definition: cv.hpp:9884
MS_2E_Mass_Spectrum
2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value ...
Definition: cv.hpp:1364
MS_static_field
static field: An electric or magnetic field that does not change in time.
Definition: cv.hpp:1361
MS_nanospray
nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min...
Definition: cv.hpp:1607
MS_contact_address
contact address: Postal address of the contact person or organization.
Definition: cv.hpp:2252
MS_thermospray_inlet
thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heat...
Definition: cv.hpp:317
MS_Sequest_sort_by_Scan
Sequest:sort_by_Scan:
Definition: cv.hpp:3524
UNIMOD_4_ONE_Delta_H__2_O__1_
4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.
Definition: cv.hpp:7973
MS_p_value_OBSOLETE
p-value: Quality estimation by p-value.
Definition: cv.hpp:3848
UNIMOD_Ub_VME
Ub-VME: Ubiquitin vinylmethylester.
Definition: cv.hpp:9122
MS_Applied_Biosystems_instrument_model
Applied Biosystems instrument model: Applied Biosystems instrument model.
Definition: cv.hpp:1925
UNIMOD_Guanidinyl
Guanidinyl: Guanidination.
Definition: cv.hpp:6578
MS_senior_author
senior author: The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution.
Definition: cv.hpp:6380
MS_heavy_labeled_peptide
heavy labeled peptide: A peptide that has been created or labeled with some heavier-than-usual isotop...
Definition: cv.hpp:3215
MS_retention_time_window_width
retention time window width: The full width of a retention time window for a chromatographic peak...
Definition: cv.hpp:5969
MS_H_PINS_retention_time_normalization_standard
H-PINS retention time normalization standard: The de facto standard providing the retention times at ...
Definition: cv.hpp:3251
MS_continuous_mass_spectrum
continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded...
Definition: cv.hpp:560
UNIMOD_Lys_loss
Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.
Definition: cv.hpp:7013
std::string id
the short label to be used as a reference tag with which to refer to this particular Controlled Vocab...
Definition: cv.hpp:10159
UNIMOD_Biotin
Biotin: Biotinylation.
Definition: cv.hpp:6458
UNIMOD_Met__Hpg
Met-&gt;Hpg: Methionine replacement by homopropargylglycine.
Definition: cv.hpp:8171
MS_modification_probability
modification probability: The a priori probability of a modification.
Definition: cv.hpp:5876
MS_ProteomeDiscoverer_Mascot_X_Static_Modification
ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search...
Definition: cv.hpp:5201
MS_MassHunter_BioConfirm
MassHunter BioConfirm: Software for protein characterization.
Definition: cv.hpp:2558
UO_plaque_forming_unit_per_milliliter
plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in o...
Definition: cv.hpp:9938
MS_DeBunker_score
DeBunker:score: Score specific to DeBunker.
Definition: cv.hpp:6176
MS_solariX
solariX: Bruker Daltonics&#39; solariX: ESI, MALDI, Qh-FT_ICR.
Definition: cv.hpp:4886
MS_mass_defect
mass defect: The difference between the monoisotipic and nominal mass of a molecule or atom...
Definition: cv.hpp:899
UO_dynamic_range_unit
dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast av...
Definition: cv.hpp:10007
UNIMOD_Puromycin
Puromycin: Puromycin.
Definition: cv.hpp:8321
UNIMOD_Glycerophospho
Glycerophospho: Glycerophospho.
Definition: cv.hpp:7250
MS_free_electron_laser
free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which...
Definition: cv.hpp:3095
MS_tolerance_on_types_OBSOLETE
tolerance on types: OBSOLETE: Tolerance on types.
Definition: cv.hpp:3494
MS_coated_glass_plate
coated glass plate: Coated glass plate.
Definition: cv.hpp:6071
MS_GCT_Premier
GCT Premier: Waters oa-ToF based.
Definition: cv.hpp:5558
UNIMOD_Gln__Pro
Gln-&gt;Pro: Gln-&gt;Pro substitution.
Definition: cv.hpp:7730
MS_peptide_labeling_state
peptide labeling state: A state description of how a peptide might be isotopically or isobarically la...
Definition: cv.hpp:3212
MS_ProfileAnalysis
ProfileAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2693
MS_param__z_1_ion
param: z+1 ion:
Definition: cv.hpp:4457
UNIMOD_Biotin_Thermo_21901_2H2O
Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.
Definition: cv.hpp:9248
UNIMOD_Label_13C_4_15N_1_
Label:13C(4)15N(1): 13C4 15N1 label for SILAC.
Definition: cv.hpp:9203
UO_disintegrations_per_second
disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a ...
Definition: cv.hpp:9941
MS_ProteomeDiscoverer_Mascot_Decoy_Search_OBSOLETE
ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application search...
Definition: cv.hpp:5186
MS_Cleavage_agent_regular_expression
Cleavage agent regular expression: Branch containing regular expressions for cleavage enzymes...
Definition: cv.hpp:3836
MS_isobaric_label_quantitation_analysis
isobaric label quantitation analysis: Quantitation analysis using an isobaric labeling workflow...
Definition: cv.hpp:6299
MS_LCQ_Classic
LCQ Classic: ThermoFinnigan LCQ Classic MS.
Definition: cv.hpp:704
MS_frag__z_2_ion
frag: z+2 ion:
Definition: cv.hpp:4346
MS_mass_to_charge_ratio
mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by divid...
Definition: cv.hpp:218
MS_Element_GD
Element GD: Thermo Scientific Element GD Glow Discharge MS.
Definition: cv.hpp:2453
UNIMOD_Propionamide_2H_3_
Propionamide:2H(3): Acrylamide d3.
Definition: cv.hpp:6641
MS_NG_5400
NG-5400: Waters NG-5400 MS.
Definition: cv.hpp:740
UNIMOD_mTRAQ_13C_6_15N_2_
mTRAQ:13C(6)15N(2): MTRAQ heavy.
Definition: cv.hpp:9215
MS_Bruker_Agilent_YEP_file
Bruker/Agilent YEP file: Bruker/Agilent YEP file format.
Definition: cv.hpp:2150
MS_ion_reaction
ion reaction: Chemical transformation involving an ion.
Definition: cv.hpp:1733
UNIMOD_Biotin_phenacyl
Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.
Definition: cv.hpp:8027
MS_ProteomeDiscoverer_SEQUEST_Fragment_Ion_Cutoff_Percentage
ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that mu...
Definition: cv.hpp:5261
MS_wavelength_array
wavelength array: A data array of electromagnetic radiation wavelength values.
Definition: cv.hpp:2354
MS_anti_aromatic_ion
anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.
Definition: cv.hpp:1481
MS_deisotoping
deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is comm...
Definition: cv.hpp:194
UO_mass_density_unit
mass density unit: A density unit which is a standard measure of the mass of a substance in a given v...
Definition: cv.hpp:9455
MS_linked_scan_at_constant_b_e
linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrom...
Definition: cv.hpp:1400
MS_Scaffold__Minimum_Peptide_Probability
Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for pro...
Definition: cv.hpp:4964
MS_TIC
TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/...
Definition: cv.hpp:1250
UNIMOD_Lys__Tyr
Lys-&gt;Tyr: Lys-&gt;Tyr substitution.
Definition: cv.hpp:8771
UNIMOD_Ala__Glu
Ala-&gt;Glu: Ala-&gt;Glu substitution.
Definition: cv.hpp:7499
MS_electromagnetic_radiation_chromatogram
electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function o...
Definition: cv.hpp:2969
MS_selected_reaction_monitoring_chromatogram
selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measureme...
Definition: cv.hpp:4652
UNIMOD_Ala__Tyr
Ala-&gt;Tyr: Ala-&gt;Tyr substitution.
Definition: cv.hpp:8513
MS_chromatogram
chromatogram: The representation of detector response versus time.
Definition: cv.hpp:2384
MS_param__z_ion
param: z ion:
Definition: cv.hpp:4055
MS_m_z_difference
m/z difference (delta m/z): The difference between a theoretically calculated m/z and the correspondi...
Definition: cv.hpp:6182
UNIMOD_Val__Pro
Val-&gt;Pro: Val-&gt;Pro substitution.
Definition: cv.hpp:8999
MS_collision_energy_ramp_end
collision energy ramp end: Collision energy at the end of the collision energy ramp.
Definition: cv.hpp:6317
MS_electron_induced_excitation_in_organics
electron-induced excitation in organics: The reaction of an ion with an electron in which the transla...
Definition: cv.hpp:1046
UNIMOD_probiotinhydrazide
probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.
Definition: cv.hpp:7097
UNIMOD_Diphthamide
Diphthamide: Diphthamide.
Definition: cv.hpp:7139
UNIMOD_GluGluGlu
GluGluGlu: Triglutamyl.
Definition: cv.hpp:7337
MS_ProteomeDiscoverer_Xtract_Monoisotopic_Mass_Only
ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern...
Definition: cv.hpp:5159
MS_Paragon_confidence
Paragon:confidence: The Paragon result &#39;Confidence&#39;.
Definition: cv.hpp:3800
UNIMOD_DHP
DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.
Definition: cv.hpp:7373
UNIMOD_Lysbiotinhydrazide
Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.
Definition: cv.hpp:7091
UNIMOD_Arg__Tyr
Arg-&gt;Tyr: Arg-&gt;Tyr substitution.
Definition: cv.hpp:8930
MS_QuantAnalysis
QuantAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2717
MS_Bioworks
Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.
Definition: cv.hpp:2045
MS_m_z_calibration
m/z calibration: Calibration of data point m/z positions.
Definition: cv.hpp:4694
UNIMOD_FAD
FAD: Flavin adenine dinucleotide.
Definition: cv.hpp:6572
MS_ProteomeDiscoverer_Xtract_Resolution_At_400
ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.
Definition: cv.hpp:5168
UO_mass_volume_percentage
mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in...
Definition: cv.hpp:9785
MS_thresholding
thresholding (low intensity data point removal): The removal of very low intensity data points that a...
Definition: cv.hpp:2276
UO_plane_angle_unit
plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the...
Definition: cv.hpp:9665
MS_sequential_m_z_separation_method
sequential m/z separation method: Sequential m/z separation method.
Definition: cv.hpp:1757
MS_charge_state
charge state: The charge state of the ion, single or multiple and positive or negatively charged...
Definition: cv.hpp:227
UNIMOD_HexNAc_2_dHex_1_
HexNAc(2)dHex(1): HexNAc2dHex1.
Definition: cv.hpp:6746
MS_CompassXport
CompassXport: Bruker stand-alone software for data conversion.
Definition: cv.hpp:2660
MS_Continuum_Mass_Spectrum
Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded ...
Definition: cv.hpp:563
UO_millimolal
millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m...
Definition: cv.hpp:9506
MS_delta_m_z
delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally...
Definition: cv.hpp:6179
MS_Phenyx_Turbo
Phenyx:Turbo:
Definition: cv.hpp:4379
MS_radical_ion
radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state...
Definition: cv.hpp:1541
MS_positive_ion
positive ion: An atomic or molecular species having a net positive electric charge.
Definition: cv.hpp:1535
UNIMOD_AMTzHexNAc2
AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.
Definition: cv.hpp:8231
MS_normalization_to_mean_of_sum_of_all_proteins
normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum ...
Definition: cv.hpp:5834
MS_Paragon_score
Paragon:score: The Paragon result &#39;Score&#39;.
Definition: cv.hpp:3797
MS_____BD__
(?=[BD]):
Definition: cv.hpp:4079
UO_liter
liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3]...
Definition: cv.hpp:9596
UNIMOD_PhosphoHex
PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.
Definition: cv.hpp:7277
UNIMOD_Methylphosphonate
Methylphosphonate: Methylphosphonylation.
Definition: cv.hpp:7937
MS_HiRes_MALDI
HiRes MALDI: IonSpec HiResMALDI MS.
Definition: cv.hpp:689
MS_Paragon_unused_protscore
Paragon:unused protscore: The Paragon result &#39;Unused ProtScore&#39;.
Definition: cv.hpp:3791
UNIMOD_Label_13C_6_15N_2__GlyGly
Label:13C(6)15N(2)+GlyGly: 13C(6) 15N(2) Lysine glygly.
Definition: cv.hpp:8114
UNIMOD_Gly__Asp
Gly-&gt;Asp: Gly-&gt;Asp substitution.
Definition: cv.hpp:7592
MS_pyrolysis_mass_spectrometry
pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point...
Definition: cv.hpp:1181
UNIMOD_Val__Phe
Val-&gt;Phe: Val-&gt;Phe substitution.
Definition: cv.hpp:7838
MS_scan_number_s__OBSOLETE
scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData.
Definition: cv.hpp:3644
UNIMOD_Thiazolidine
Thiazolidine: Addition of Carbon to cysteine.
Definition: cv.hpp:8402
MS_CRF
CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond ...
Definition: cv.hpp:995
UO_hour
hour: A time unit which is equal to 3600 seconds or 60 minutes.
Definition: cv.hpp:9395
MS_instrument
instrument: Description of the instrument or the mass spectrometer.
Definition: cv.hpp:1823
UNIMOD_Arg_loss
Arg-loss: Loss of arginine due to transpeptidation.
Definition: cv.hpp:9176
MS_membrane_inlet
membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly t...
Definition: cv.hpp:1598
UO_microsievert
microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv...
Definition: cv.hpp:9713
MS_de_facto_standard
de facto standard: A practice or product that has become a standard not because it has been approved ...
Definition: cv.hpp:3242
UO_pixels_per_millimeter
pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels ...
Definition: cv.hpp:10022
MS_p_value__protein_diff_from_1_randomly_
p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).
Definition: cv.hpp:3707
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr paramete...
Definition: cv.hpp:5366
UNIMOD_Retinylidene
Retinylidene: Retinal.
Definition: cv.hpp:7154
UNIMOD_Xle__Ala
Xle-&gt;Ala: Leu/Ile-&gt;Ala substitution.
Definition: cv.hpp:8723
UNIMOD_Cation_Ca_II_
Cation:Ca[II]: Replacement of 2 protons by calcium.
Definition: cv.hpp:8279
UO_microgray
microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy...
Definition: cv.hpp:9719
MS_label_free_protein_level_quantitation
label-free protein level quantitation: Label-free protein level quantitation.
Definition: cv.hpp:6338
UNIMOD_Dehydro
Dehydro: Half of a disulfide bridge.
Definition: cv.hpp:7136
MS_intensity_of_precursor_ion
intensity of precursor ion: The intensity of the precursor ion.
Definition: cv.hpp:3722
MS_mass_spectrometer_file_format
mass spectrometer file format: The format of the file being used. This could be a instrument or vendo...
Definition: cv.hpp:2129
UNIMOD_cysTMT6plex
cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.
Definition: cv.hpp:8342
MS_Phenyx_Peptides1
Phenyx:Peptides1: First number of phenyx result "#Peptides".
Definition: cv.hpp:4415
MS_peak_list_scans
peak list scans: A list of scan numbers and or scan ranges associated with a peak list...
Definition: cv.hpp:2918
UO_microsecond
microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.
Definition: cv.hpp:9386
UNIMOD_iodoTMT
iodoTMT: Native iodoacetyl Tandem Mass Tag®.
Definition: cv.hpp:9284
MS_autoflex
autoflex: Bruker Daltonics&#39; autoflex: MALDI TOF.
Definition: cv.hpp:4898
MS_DB_PI_filter_maximum
DB PI filter maximum:
Definition: cv.hpp:3884
MS_ProteomeDiscoverer_SEQUEST_Weight_of_w_Ions
ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5327
MS_InternalCalibration
InternalCalibration: Applies an internal calibration.
Definition: cv.hpp:2786
MS_light_labeled_sample
light labeled sample (unlabeled sample): A sample that has not been labelled or modified. This is often referred to as "light" to distinguish from "heavy".
Definition: cv.hpp:6392
MS_dissociative_ionization
dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to fo...
Definition: cv.hpp:1577
MS_ProteinExtractor_ProteinSolverPeptideScoreThreshold
ProteinExtractor:ProteinSolverPeptideScoreThreshold:
Definition: cv.hpp:4553
MS_quantitation_software_version_OBSOLETE
quantitation software version: Quantitation software version.
Definition: cv.hpp:3719
MS_Quistor
Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensi...
Definition: cv.hpp:386
MS_BioTOF_Q
BioTOF-Q: Bruker Daltonics&#39; BioTOF-Q: ESI Q-TOF.
Definition: cv.hpp:656
MS_inductively_coupled_plasma
inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied ...
Definition: cv.hpp:287
MS_field_ionization
field ionization: The removal of electrons from any species by interaction with a high electric field...
Definition: cv.hpp:1082
UNIMOD_CyDye_Cy5
CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.
Definition: cv.hpp:7385
MS_LC_MS_feature_intensity
LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.
Definition: cv.hpp:5768
MS_MSn_spectrum
MSn spectrum: MSn refers to multi-stage MS/MS experiments designed to record product ion spectra wher...
Definition: cv.hpp:2204
MS_mass_chromatogram
mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a functi...
Definition: cv.hpp:2966
MS_EA
EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ...
Definition: cv.hpp:863
MS_ProteomeDiscoverer_Target_FDR_Strict
ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR...
Definition: cv.hpp:5240
MS_coefficient_of_variation
coefficient of variation: Variation of a set of signal measurements calculated as the standard deviat...
Definition: cv.hpp:5897
MS_polarity
polarity: Terms to describe the polarity setting of the instrument.
Definition: cv.hpp:206
UNIMOD_Cys__Xle
Cys-&gt;Xle: Cys-&gt;Leu/Ile substitution.
Definition: cv.hpp:8528
UNIMOD_Tyr__Asp
Tyr-&gt;Asp: Tyr-&gt;Asp substitution.
Definition: cv.hpp:7886
MS_secondary_electron
secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a ...
Definition: cv.hpp:1469
MS_mathieu_stability_diagram
mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that ...
Definition: cv.hpp:1349
MS_Asp_N
Asp-N:
Definition: cv.hpp:4157
UNIMOD_Trioxidation
Trioxidation: Cysteine oxidation to cysteic acid.
Definition: cv.hpp:7073
PWIZ_API_DECL const CVTermInfo & cvTermInfo(CVID cvid)
returns CV term info for the specified CVID
MS_QSTAR_XL
QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.
Definition: cv.hpp:2483
UNIMOD_Phosphogluconoylation
Phosphogluconoylation: Phosphogluconoylation.
Definition: cv.hpp:9293
UNIMOD_Xlink_DST
Xlink:DST: Monolink of DST crosslinker to Lys or N-terminus.
Definition: cv.hpp:8432
MS_MzStar
MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format...
Definition: cv.hpp:2075
MS_frag__a_ion___NH3
frag: a ion - NH3: Fragmentation information, type of product: a ion without ammonium.
Definition: cv.hpp:3977
MS_pre_ionization_state
pre-ionization state: An electronic state capable of undergoing auto-Ionization.
Definition: cv.hpp:1616
UNIMOD_Ser__Gly
Ser-&gt;Gly: Ser-&gt;Gly substitution.
Definition: cv.hpp:7811
MS_selected_reaction_monitoring
selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected ...
Definition: cv.hpp:824
MS_PASSEL_transition_group_browser_URI
PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas...
Definition: cv.hpp:6368
MS_AB_SCIEX_TOF_TOF_Series_Explorer_Software
AB SCIEX TOF/TOF Series Explorer Software: AB SCIEX or Applied Biosystems software for TOF/TOF data a...
Definition: cv.hpp:4688
MS_TOF_MS
TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free r...
Definition: cv.hpp:1262
MS_chemical_compound_formula
chemical compound formula: A combination of symbols used to express the chemical composition of a com...
Definition: cv.hpp:3134
MS_reflectron
reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direc...
Definition: cv.hpp:1301
UNIMOD_glycidamide
glycidamide: Glycidamide adduct.
Definition: cv.hpp:8411
MS_Compass
Compass: Bruker Compass software.
Definition: cv.hpp:2645
MS_Element_XR
Element XR: Thermo Scientific Element XR HR-ICP-MS.
Definition: cv.hpp:2447
MS_Thermo_Electron_instrument_model
Thermo Electron instrument model: Thermo Electron Corporation instrument model.
Definition: cv.hpp:1916
MS_apex_ultra
apex ultra: Bruker Daltonics&#39; apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition: cv.hpp:2594
UNIMOD_Ser__Trp
Ser-&gt;Trp: Ser-&gt;Trp substitution.
Definition: cv.hpp:7787
MS_protein_ambiguity_group_result_details
protein ambiguity group result details:
Definition: cv.hpp:3740
MS_Phenyx_Conflict_Resolution
Phenyx:Conflict Resolution:
Definition: cv.hpp:4403
UO_count_per_molar_second
count per molar second: A rate unit which is equal to one over one molar second.
Definition: cv.hpp:10139
UNIMOD_GluGlu
GluGlu: Diglutamyl.
Definition: cv.hpp:7334
MS_membrane_separator
membrane separator: A device to separate carrier molecules from analyte molecules on the basis of eas...
Definition: cv.hpp:296
UNIMOD_His__Gly
His-&gt;Gly: His-&gt;Gly substitution.
Definition: cv.hpp:8702
MS_zoom_scan
zoom scan: Special scan mode, where data with improved resoltuion is acquired. This is typically achi...
Definition: cv.hpp:1934
MS_sample_batch
sample batch: Sample batch lot identifier.
Definition: cv.hpp:266
UO_mole_fraction
mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of th...
Definition: cv.hpp:9527
MS_Sequest_sort_by_P
Sequest:sort_by_P:
Definition: cv.hpp:3476
MS_ProteomeDiscoverer_Initial_minimal_peptide_probability
ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contri...
Definition: cv.hpp:5423
MS_ProteomeDiscoverer_SEQUEST_Maximum_Peptides_Considered
ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched ...
Definition: cv.hpp:5270
MS_metastable_ion
metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation...
Definition: cv.hpp:1517
MS_frag__c_ion
frag: c ion: Fragmentation information, type of product: c ion.
Definition: cv.hpp:3965
MS_ProteomeDiscoverer_SEQUEST_Use_Average_Fragment_Masses
ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments...
Definition: cv.hpp:5297
UNIMOD_Ethanolamine
Ethanolamine: Carboxyl modification with ethanolamine.
Definition: cv.hpp:7949
UNIMOD_QAT_2H_3_
QAT:2H(3): APTA d3.
Definition: cv.hpp:6833
MS_area_peak_picking
area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to...
Definition: cv.hpp:2930
MS_protein
protein: A compound composed of one or more chains of amino acids in a specific order determined by t...
Definition: cv.hpp:3188
MS_PQD
PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q...
Definition: cv.hpp:2297
UNIMOD_Asn__Phe
Asn-&gt;Phe: Asn-&gt;Phe substitution.
Definition: cv.hpp:8822
UNIMOD_Methyl
Methyl: Methylation.
Definition: cv.hpp:6527
UNIMOD_NBS
NBS: Shimadzu NBS-12C.
Definition: cv.hpp:6800
MS_alpha_cleavage
alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to th...
Definition: cv.hpp:1643
UO_nanometer
nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m...
Definition: cv.hpp:9353
MS_ProteoWizard
ProteoWizard: ProteoWizard software for data processing and analysis. Primarily developed by the labs...
Definition: cv.hpp:2345
UNIMOD_Menadione_HQ
Menadione-HQ: Menadione hydroquinone derivative.
Definition: cv.hpp:8012
UO_steradian
steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere b...
Definition: cv.hpp:9674
MS_precursor_activation_attribute
precursor activation attribute: Precursor Activation Attribute.
Definition: cv.hpp:1976
MS_quadratic
quadratic: The mass scan is done in quadratic mode.
Definition: cv.hpp:434
MS_Bruker_Daltonics_solarix_series
Bruker Daltonics solarix series: Bruker Daltonics&#39; solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
Definition: cv.hpp:4883
MS_ProteomeDiscoverer_Residue_substitution_list
ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides...
Definition: cv.hpp:5456
UNIMOD_Pyridylethyl
Pyridylethyl: S-pyridylethylation.
Definition: cv.hpp:6524
MS_spectral_count_peptide_level_quantitation
spectral count peptide level quantitation: Spectral count peptide level quantitation.
Definition: cv.hpp:6320
UNIMOD_CarbamidomethylDTT
CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.
Definition: cv.hpp:8153
MS_FlexAnalysis
FlexAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2051
MS_normalized_retention_time
normalized retention time: A measure of the interval relative to the beginning of a mass spectrometri...
Definition: cv.hpp:3233
MS_p_value_for_proteins
p-value for proteins: Protein identification confidence metric p-value.
Definition: cv.hpp:5861
UNIMOD_Thr__Xle
Thr-&gt;Xle: Thr-&gt;Leu/Ile substitution.
Definition: cv.hpp:7832
MS_EMR_spectrum
EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagneti...
Definition: cv.hpp:2948
UNIMOD_EHD_diphenylpentanone
EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.
Definition: cv.hpp:9245
MS_ProteomeDiscoverer_3__Dynamic_Modification
ProteomeDiscoverer:3. Dynamic Modification: Determine 3rd dynamic post-translational modifications (P...
Definition: cv.hpp:5414
MS_Phenyx_Pepzscore
Phenyx:Pepzscore:
Definition: cv.hpp:4427
UNIMOD_BHAc
BHAc: N-biotinyl-6-aminohexanoyl.
Definition: cv.hpp:8372
MS_normalized_XIC_area
normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM)...
Definition: cv.hpp:5825
MS_SQID
SQID: Software for data analysis of peptides and proteins.
Definition: cv.hpp:5906
MS_Finnigan_MAT_instrument_model
Finnigan MAT instrument model: Finnigan MAT instrument model.
Definition: cv.hpp:1919
UO_siemens
siemens: An electrical conduction unit which is equal to A/V.
Definition: cv.hpp:10085
MS_Hitachi_instrument_model
Hitachi instrument model: Hitachi instrument model.
Definition: cv.hpp:1904
UO_meter_per_second
meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter di...
Definition: cv.hpp:9581
MS_purgatory
purgatory: Terms that will likely become obsolete unless there are wails of dissent.
Definition: cv.hpp:1877
UNIMOD_FormylMet
FormylMet: Addition of N-formyl met.
Definition: cv.hpp:6650
MS_SRM
SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z sel...
Definition: cv.hpp:827
MS_Arg_C
Arg-C: Endoproteinase Arg-C.
Definition: cv.hpp:4151
UNIMOD_iTRAQ4plex
iTRAQ4plex: Representative mass and accurate mass for 116 &amp; 117.
Definition: cv.hpp:6872
MS_DBExporter
DBExporter: Exports data from an OpenMS database to a file.
Definition: cv.hpp:2771
UO_Roentgen_equivalent_man
Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one siev...
Definition: cv.hpp:9716
MS_Accela_PDA
Accela PDA: Accela PDA.
Definition: cv.hpp:2375
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Quantitation_Method
ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically ...
Definition: cv.hpp:5348
MS_____M_
(?&lt;=M):
Definition: cv.hpp:4241
PWIZ_API_DECL const CV & cv(const std::string &prefix)
returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO ...
MS_base_peak
base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to t...
Definition: cv.hpp:842
MS_absorption_spectrum
absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms ...
Definition: cv.hpp:2954
MS_DI
DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vap...
Definition: cv.hpp:1019
UO_pixels_per_inch
pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a compute...
Definition: cv.hpp:10019
MS_co_eluting_ion
co-eluting ion: Co-eluting ion.
Definition: cv.hpp:3995
UO_megabyte
megabyte: An information unit which is equal to 1000 kB.
Definition: cv.hpp:9998
MS_decoy_DB_accession_regexp
decoy DB accession regexp: Specify the regular expression for decoy accession numbers.
Definition: cv.hpp:4091
MS_point_collector
point collector: A detector in which the ion beam is focused onto a point and the individual ions arr...
Definition: cv.hpp:1463
MS_FFR
FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic ...
Definition: cv.hpp:875
MS_total_ion_current_chromatogram
total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in e...
Definition: cv.hpp:947
MS_microflex_LT
microflex LT: Bruker Daltonics&#39; microflex LT: MALDI TOF.
Definition: cv.hpp:2612
MS_t_test_p_value
t-test p-value: P-value of t-Test of two groups.
Definition: cv.hpp:5813
MS_ProteomeDiscoverer_SEQUEST_Weight_of_v_Ions
ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5324
MS_AXIMA_CFR_MALDI_TOF
AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.
Definition: cv.hpp:2321
UNIMOD_Thr__Ala
Thr-&gt;Ala: Thr-&gt;Ala substitution.
Definition: cv.hpp:7817
MS_McLafferty_Rearrangement
McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-me...
Definition: cv.hpp:1718
MS_matrix_assisted_laser_desorption_ionization
matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are ...
Definition: cv.hpp:350
MS_wolf
wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML...
Definition: cv.hpp:2063
MS_Bruker_Agilent_YEP_nativeID_format
Bruker/Agilent YEP nativeID format: scan=xsd:nonNegativeInteger.
Definition: cv.hpp:2825
UNIMOD_Cholesterol
Cholesterol: Cholesterol ester.
Definition: cv.hpp:7283
MS_even_electron_ion
even-electron ion: An ion containing no unpaired electrons in its ground electronic state...
Definition: cv.hpp:1040
MS_no_combination
no combination: Use this term if only one scan was recorded or there is no information about scans av...
Definition: cv.hpp:2912
MS_Acquity_SQD
Acquity SQD: Waters quadrupole based.
Definition: cv.hpp:5609
MS_multiple_enzyme_combination_rules_OBSOLETE
multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead...
Definition: cv.hpp:3479
MS_MassHunter_Quantitative_Analysis
MassHunter Quantitative Analysis: Software for quantitation of Triple Quadruople and Quadrupole Time-...
Definition: cv.hpp:2552
MS_contact_role
contact role: Role of the contact person.
Definition: cv.hpp:6374
MS_ProteomeDiscoverer_Minimal_peptide_weight
ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability...
Definition: cv.hpp:5429
MS_MassLynx
MassLynx: Micromass software for data acquisition and analysis.
Definition: cv.hpp:2048
UNIMOD_Cys__methylaminoAla
Cys-&gt;methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ...
Definition: cv.hpp:8246
MS_DELTAplusXP
DELTAplusXP: ThermoFinnigan DELTAplusXP MS.
Definition: cv.hpp:662
MS_dilution_series__concentration_X
dilution series, concentration X: The experimental design followed a dilution series design...
Definition: cv.hpp:5696
MS_local_retention_time
local retention time: A measure of the interval relative to the beginning of a mass spectrometric run...
Definition: cv.hpp:3230
UNIMOD_Cys__Trp
Cys-&gt;Trp: Cys-&gt;Trp substitution.
Definition: cv.hpp:7511
MS_peptide
peptide: A compound of low molecular weight that is composed of two or more amino acids...
Definition: cv.hpp:3116
MS_plasma_desorption
plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutra...
Definition: cv.hpp:590
MS_ProteomeDiscoverer_Number_of_input1_spectra
ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.
Definition: cv.hpp:5432
MS_ProteomeDiscoverer_Min_Precursor_Mass
ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion...
Definition: cv.hpp:5072
MS_protonated_molecule
protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented...
Definition: cv.hpp:1538
MS_dynode
dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to ampli...
Definition: cv.hpp:1454
MS_full_scan
full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range...
Definition: cv.hpp:1940
UO_foot_candle
foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread ...
Definition: cv.hpp:9752
MS_modification_specificity_C_term
modification specificity C-term: As parameter for search engine: apply the modification only C-termin...
Definition: cv.hpp:3845
MS_API
API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas pha...
Definition: cv.hpp:977
MS_product_ion_intensity
product ion intensity: The intensity of the product ion.
Definition: cv.hpp:3947
UNIMOD_Lys__Gln
Lys-&gt;Gln: Lys-&gt;Gln substitution.
Definition: cv.hpp:7634
UNIMOD_Hydroxytrimethyl
Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.
Definition: cv.hpp:7319
MS_Phenyx_Turbo_Series
Phenyx:Turbo:Series:
Definition: cv.hpp:4388
MS_ISB_mzXML_file
ISB mzXML file: Institute of Systems Biology mzXML file format.
Definition: cv.hpp:2147
MS_ionization_efficiency_OBSOLETE
ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
Definition: cv.hpp:881
UNIMOD_Xle__Ser
Xle-&gt;Ser: Leu/Ile-&gt;Ser substitution.
Definition: cv.hpp:7646
MS_Phenyx
Phenyx:
Definition: cv.hpp:3896
MS_SRM_transition_type
SRM transition type: The type of the transitions, e.g. target or decoy.
Definition: cv.hpp:6281
UO_area_density_unit
area density unit: A density unit which is a standard measure of the mass exerting an influence on a ...
Definition: cv.hpp:9461
MS_reflectron_state
reflectron state: Status of the reflectron, turned on or off.
Definition: cv.hpp:155
MS_mass_spectrum
mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function o...
Definition: cv.hpp:1283
UNIMOD_Biotin_Thermo_21325
Biotin:Thermo-21325: Was ChromoBiotin.
Definition: cv.hpp:8129
MS_time_of_flight_mass_spectrometer
time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region aft...
Definition: cv.hpp:1259
UNIMOD_Val__Trp
Val-&gt;Trp: Val-&gt;Trp substitution.
Definition: cv.hpp:9014
UO_milliliter_per_kilogram
milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogra...
Definition: cv.hpp:9887
UNIMOD_His__Ser
His-&gt;Ser: His-&gt;Ser substitution.
Definition: cv.hpp:8711
MS_PROTEINEER_spII
PROTEINEER spII: Bruker PROTEINEER spII software.
Definition: cv.hpp:2705
UNIMOD_Gly__Arg
Gly-&gt;Arg: Gly-&gt;Arg substitution.
Definition: cv.hpp:7598
MS_biological_replicate
biological replicate: The study variable is &#39;biological replicate&#39;. This means, the run was generated...
Definition: cv.hpp:5675
MS_MaRiMba
MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on o...
Definition: cv.hpp:3158
MS_Sequest_TopPercentMostIntense
Sequest:TopPercentMostIntense: Specify "percentage" as value of the CVParam!
Definition: cv.hpp:3587
MS_height_peak_picking
height peak picking: Spectral peak processing conducted on the acquired data to convert profile data ...
Definition: cv.hpp:2936
MS_fast_evaporation_MALDI_sample_preparation
fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method...
Definition: cv.hpp:6227
UNIMOD_Lys__Pro
Lys-&gt;Pro: Lys-&gt;Pro substitution.
Definition: cv.hpp:8759
MS_contact_attribute
contact attribute: Details about a person or organization to contact in case of concern or discussion...
Definition: cv.hpp:2246
MS_MaxQuant_peptide_counts__razor_unique_
MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQu...
Definition: cv.hpp:5945
UNIMOD_Delta_H_6_C_6_O_1_
Delta:H(6)C(6)O(1): Acrolein addition +94.
Definition: cv.hpp:6848
UO_nanoliter
nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L...
Definition: cv.hpp:9605
MS_DB_composition_target_decoy
DB composition target+decoy: Decoy database composition: database contains original (target) and deco...
Definition: cv.hpp:3866
MS_precursor_ion
precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular d...
Definition: cv.hpp:1430
MS_EM
EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or...
Definition: cv.hpp:1055
MS_Phenyx_Peptides2
Phenyx:Peptides2: Second number of phenyx result "#Peptides".
Definition: cv.hpp:4418
UNIMOD_GeranylGeranyl
GeranylGeranyl: Geranyl-geranyl.
Definition: cv.hpp:6566
UNIMOD_unimod_root_node
unimod root node: The root node of the unimod modifications ontology.
Definition: cv.hpp:6449
UNIMOD_Triiodo
Triiodo: Tri-Iodination.
Definition: cv.hpp:6707
MS_ProteinLynx_XML
ProteinLynx XML: Source file for this mzIdentML was in Waters ProteinLynx XML format.
Definition: cv.hpp:4931
MS_Sequest_Sequences
Sequest:Sequences:
Definition: cv.hpp:4358
MS_GCT
GCT: Waters GCT MS.
Definition: cv.hpp:677
MS_decoy_DB_type_shuffle
decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order...
Definition: cv.hpp:4589
UNIMOD_O_pinacolylmethylphosphonate
O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.
Definition: cv.hpp:7934
MS_peptide_attribute_calculation_software
peptide attribute calculation software: Software used to predict or calculate numberical attributes o...
Definition: cv.hpp:3161
MS_frag__internal_yb_ion
frag: internal yb ion:
Definition: cv.hpp:4337
MS_Scan_Function
Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical ac...
Definition: cv.hpp:143
MS_MALDI_Synapt_MS
MALDI Synapt MS: Waters oa-ToF based.
Definition: cv.hpp:5576
UNIMOD_Label_13C_3_15N_1_
Label:13C(3)15N(1): 13C3 15N1 label for SILAC.
Definition: cv.hpp:9200
MS_spectrum_subsumable_protein
spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are di...
Definition: cv.hpp:5045
MS_Pro_Quant
Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.
Definition: cv.hpp:2519
MS_NRMS
NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neu...
Definition: cv.hpp:1172
UNIMOD_Met__Arg
Met-&gt;Arg: Met-&gt;Arg substitution.
Definition: cv.hpp:7676
MS_ionization_cross_section
ionization cross section: A measure of the probability that a given ionization process will occur whe...
Definition: cv.hpp:878
MS_MALDI_matrix_application
MALDI matrix application: Attributes to describe the technique how the sample is prepared with the ma...
Definition: cv.hpp:3032
MS_superelastic_collision
superelastic collision: Collision in which the translational energy of the fast-moving collision part...
Definition: cv.hpp:1736
MS_SSRCalc
SSRCalc: Sequence Specific Retention Calculator esimates the retention time of peptides based on thei...
Definition: cv.hpp:3164
MS_DB_MW_filter
DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range...
Definition: cv.hpp:3404
UNIMOD_Gly__Met
Gly-&gt;Met: Gly-&gt;Met substitution.
Definition: cv.hpp:8672
MS_quantitation_software_name
quantitation software name: Quantitation software name.
Definition: cv.hpp:3716
MS_mass_selective_instability
mass selective instability: A method for selective ejection of ions according to their m/z value in a...
Definition: cv.hpp:1346
UNIMOD_Molybdopterin
Molybdopterin: Molybdopterin.
Definition: cv.hpp:7178
UNIMOD_Glu__His
Glu-&gt;His: Glu-&gt;His substitution.
Definition: cv.hpp:8591
MS_LTQ
LTQ: Finnigan LTQ MS.
Definition: cv.hpp:1766
MS_isolation_window_lower_offset
isolation window lower offset: The extent of the isolation window in m/z below the isolation window t...
Definition: cv.hpp:3023
MS_3100
3100: Waters quadrupole based.
Definition: cv.hpp:5606
MS_space_charge_effect
space charge effect: The mutual repulsion of particles of like charge that limits the current in a ch...
Definition: cv.hpp:1358
MS_ProteomeDiscoverer_phosphoRS_score
ProteomeDiscoverer:phosphoRS score: Peptide score based on the cumulative binomial probability that t...
Definition: cv.hpp:6161
UNIMOD_Gly__His
Gly-&gt;His: Gly-&gt;His substitution.
Definition: cv.hpp:8663
UNIMOD_Farnesyl
Farnesyl: Farnesylation.
Definition: cv.hpp:6554
MS_MS1_feature_area
MS1 feature area: Area of MS1 feature.
Definition: cv.hpp:5780
UNIMOD_GlycerylPE
GlycerylPE: Glycerylphosphorylethanolamine.
Definition: cv.hpp:7193
UNIMOD_Ser__Glu
Ser-&gt;Glu: Ser-&gt;Glu substitution.
Definition: cv.hpp:8939
MS_multi_collector
multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers...
Definition: cv.hpp:506
MS_BP
BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied...
Definition: cv.hpp:845
UNIMOD_Phe__Lys
Phe-&gt;Lys: Phe-&gt;Lys substitution.
Definition: cv.hpp:8636
UNIMOD_Lys__Arg
Lys-&gt;Arg: Lys-&gt;Arg substitution.
Definition: cv.hpp:7640
MS_lowest_observed_wavelength
lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.
Definition: cv.hpp:2360
UNIMOD_BMP_piperidinol
BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.
Definition: cv.hpp:9164
MS_microflex_II
microflex II: Bruker Daltonics&#39; microflex II: MALDI TOF.
Definition: cv.hpp:4889
UNIMOD_Hex_3_HexNAc_1_Pent_1_
Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.
Definition: cv.hpp:6767
MS_Sequest_sort_by_Sf
Sequest:sort_by_Sf:
Definition: cv.hpp:3530
MS_taxonomy__Swiss_Prot_ID
taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
Definition: cv.hpp:4640
MS_ProteomeDiscoverer_Number_of_input2_spectra
ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.
Definition: cv.hpp:5435
MS_ProteomeDiscoverer_SEQUEST_Weight_of_b_Ions
ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative fac...
Definition: cv.hpp:5315
MS_isoelectric_point
isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric f...
Definition: cv.hpp:3122
MS_continuous_flow_fast_atom_bombardment
continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solut...
Definition: cv.hpp:272
MS_Compass_for_micrOTOF
Compass for micrOTOF: Bruker Compass for micrOTOF software.
Definition: cv.hpp:2651
MS_Pegasus_4D
Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.
Definition: cv.hpp:6089
MS_scan_law
scan law: Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used.
Definition: cv.hpp:149
UO_joule
joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object ...
Definition: cv.hpp:9635
MS_frag__y_ion___NH3
frag: y ion - NH3: Fragmentation information, type of product: y ion without ammonium ion...
Definition: cv.hpp:3971
MS_Mascot_MinMSMSThreshold
Mascot:MinMSMSThreshold:
Definition: cv.hpp:4202
MS_Discoverer_MSF
Discoverer MSF: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format...
Definition: cv.hpp:4925
std::multimap< std::string, std::string > propertyValues
Definition: cv.hpp:10197
MS_decoy_DB_from_IPI_rat
decoy DB from IPI_rat:
Definition: cv.hpp:4118
MS_database_IPI_arabidopsis
database IPI_arabidopsis:
Definition: cv.hpp:4112
MS_Progenesis_protein_raw_abundance
Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-...
Definition: cv.hpp:5924
MS_base_peak_intensity
base peak intensity: The intensity of the greatest peak in the mass spectrum.
Definition: cv.hpp:1961
MS_contact_phone_number
contact phone number: Phone number of the contact person or organization.
Definition: cv.hpp:5513
MS_IonSpec_instrument_model
IonSpec instrument model: IonSpec corporation instrument model.
Definition: cv.hpp:539
UNIMOD_LG_lactam_R
LG-lactam-R: Levuglandinyl - arginine lactam adduct.
Definition: cv.hpp:7406
UO_millimeter
millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
Definition: cv.hpp:9347
MS_Daly
Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier...
Definition: cv.hpp:485
MS_isotope_ratio_mass_spectrometry
isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes o...
Definition: cv.hpp:1112
UNIMOD_Gln__Lys
Gln-&gt;Lys: Gln-&gt;Lys substitution.
Definition: cv.hpp:7733
MS_Sequest_sort_by_z
Sequest:sort_by_z:
Definition: cv.hpp:3581
MS_frag__z_1_ion
frag: z+1 ion:
Definition: cv.hpp:4343
UNIMOD_DTT_C_2H_6_
DTT_C:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of cysteines. ...
Definition: cv.hpp:8003
MS_MS_GF_PEP
MS-GF:PEP: MS-GF posterior error probability.
Definition: cv.hpp:6446
UO_spatial_resolution_unit
spatial resolution unit: An image resolution unit which is a standard measure of the way luminance an...
Definition: cv.hpp:10010
MS_data_filtering
data filtering: Filtering out part of the data.
Definition: cv.hpp:4697
MS_inductive_detector
inductive detector: Inductive detector.
Definition: cv.hpp:2378
UNIMOD_Ala__His
Ala-&gt;His: Ala-&gt;His substitution.
Definition: cv.hpp:8489
MS_percent_of_base_peak
percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percen...
Definition: cv.hpp:575
UO_unit_of_molality
unit of molality: A concentration unit which is a standard measure of the number of moles of a given ...
Definition: cv.hpp:9500
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Peak
ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact p...
Definition: cv.hpp:5132
UNIMOD_Glu__pyro_Glu
Glu-&gt;pyro-Glu: Pyro-glu from E.
Definition: cv.hpp:6512
MS_Tranche_file_hash
Tranche file hash: Hash assigned by the Tranche resource to an individual file.
Definition: cv.hpp:6032
UNIMOD_Gly__Thr
Gly-&gt;Thr: Gly-&gt;Thr substitution.
Definition: cv.hpp:8684
MS_ProteinLynx_Global_Server_mass_spectrum_XML_file
ProteinLynx Global Server mass spectrum XML file: Peak list file format used by ProteinLynx Global Se...
Definition: cv.hpp:2342
UO_microeinstein_per_square_meter_per_second
microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per...
Definition: cv.hpp:9773
MS_Sequest_deltacn
Sequest:deltacn: The SEQUEST result &#39;DeltaCn&#39;.
Definition: cv.hpp:3767
std::vector< CVID > id_list
Definition: cv.hpp:10192
MS_parent_mass_type_mono
parent mass type mono: Mass type setting for parent mass was monoisotopic.
Definition: cv.hpp:3902
UNIMOD_Asp__Val
Asp-&gt;Val: Asp-&gt;Val substitution.
Definition: cv.hpp:7541
MS_ProteinLynx_Global_Server
ProteinLynx Global Server: Waters software for data analysis.
Definition: cv.hpp:2303
UNIMOD_Dipyridyl
Dipyridyl: Cys modified with dipy ligand.
Definition: cv.hpp:9155
UNIMOD_Carboxymethyl_13C_2_
Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.
Definition: cv.hpp:8030
UO_turns_per_second
turns per second: A rotational frequency unit which is equal to the number complete turn in a period ...
Definition: cv.hpp:9575
MS_CLINPROT
CLINPROT: Bruker CLINPROT software.
Definition: cv.hpp:2633
MS_Bruker_FID_file
Bruker FID file: Bruker FID file format.
Definition: cv.hpp:3014
MS_4700_Explorer
4700 Explorer: Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2057
MS_massWolf
massWolf: A software for converting Waters raw directory format to mzXML or mzML. massWolf was origin...
Definition: cv.hpp:2060
MS_database_version_OBSOLETE
database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database ...
Definition: cv.hpp:3386
UO_radian_per_second
radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minu...
Definition: cv.hpp:9536
MS_electrospray_supply_type
electrospray supply type: Whether the sprayer is fed or is loaded with sample once.
Definition: cv.hpp:6074
MS_____W_
(?&lt;=W):
Definition: cv.hpp:6134
MS_binomial_smoothing
binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-d...
Definition: cv.hpp:2867
MS_sample_name
sample name: A reference string relevant to the sample under study.
Definition: cv.hpp:98
MS_sustained_off_resonance_irradiation
sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron reso...
Definition: cv.hpp:1229
MS_API_5000
API 5000: AB SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.
Definition: cv.hpp:2474
UNIMOD_Val__Ser
Val-&gt;Ser: Val-&gt;Ser substitution.
Definition: cv.hpp:9008
MS_mass_resolving_power
mass resolving power: The observed mass divided by the difference between two masses that can be sepa...
Definition: cv.hpp:2927
MS_MassHunter_Data_Acquisition
MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.
Definition: cv.hpp:2543
UO_mass_per_unit_volume
mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in ...
Definition: cv.hpp:9833
MS_source_sprayer
source sprayer: The source sprayer.
Definition: cv.hpp:6050
MS_magnetic_sector
magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam tha...
Definition: cv.hpp:371
MS_normalized_protein_value
normalized protein value: Normalized protein value.
Definition: cv.hpp:5804
MS_LIFT
LIFT: A Bruker&#39;s proprietary technique where molecular ions are initially accelerated at lower energy...
Definition: cv.hpp:6263
MS_selected_ion_monitoring
selected ion monitoring: The operation of a mass spectrometer in which the intensities of several spe...
Definition: cv.hpp:815
MS_EE
EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state...
Definition: cv.hpp:1043
MS_ProteomeDiscoverer_Mascot_Protein_CutOff_Score
ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that eac...
Definition: cv.hpp:5228
UNIMOD_IMEHex_2_NeuAc
IMEHex(2)NeuAc: Glycosylation with IME linked Hex(2) NeuAc.
Definition: cv.hpp:9173
MS_resolution_type
resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either...
Definition: cv.hpp:131
MS_Phenyx_XML_format
Phenyx XML format:
Definition: cv.hpp:4622
MS_Mascot_ProteinScoringMethod
Mascot:ProteinScoringMethod:
Definition: cv.hpp:4199
UNIMOD_Biotin_Thermo_21911
Biotin:Thermo-21911: Biotin-PEG11-maleimide.
Definition: cv.hpp:9281
MS_Phenyx_Modif
Phenyx:Modif:
Definition: cv.hpp:4436
UNIMOD_Met__Ala
Met-&gt;Ala: Met-&gt;Ala substitution.
Definition: cv.hpp:8774
MS_SpectraFilter
SpectraFilter: Applies a filter to peak spectra.
Definition: cv.hpp:2804
UNIMOD_Arg__Gly
Arg-&gt;Gly: Arg-&gt;Gly substitution.
Definition: cv.hpp:7778
UNIMOD_Xle__Pro
Xle-&gt;Pro: Leu/Ile-&gt;Pro substitution.
Definition: cv.hpp:7655
MS_IsoPrime
IsoPrime: Waters IsoPrime MS.
Definition: cv.hpp:692
UO_kilowatt_hour
kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.
Definition: cv.hpp:9965
MS_constant_neutral_mass_gain_spectrum
constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all produc...
Definition: cv.hpp:1382
MS_empirical_formula
empirical formula: A chemical formula which expresses the proportions of the elements present in a su...
Definition: cv.hpp:3137
MS_accelerator_mass_spectrometry
accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample a...
Definition: cv.hpp:962
UNIMOD_Chlorination
Chlorination: Chlorination of tyrosine residues.
Definition: cv.hpp:8237
UNIMOD_Thr__His
Thr-&gt;His: Thr-&gt;His substitution.
Definition: cv.hpp:8972
MS_unlabeled_sample
unlabeled sample: A sample that has not been labelled or modified. This is often referred to as "ligh...
Definition: cv.hpp:6389
MS_ProteomeDiscoverer_Number_of_input4_spectra
ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.
Definition: cv.hpp:5441
UNIMOD_Asn__Thr
Asn-&gt;Thr: Asn-&gt;Thr substitution.
Definition: cv.hpp:7691
UNIMOD_Cys__Ser
Cys-&gt;Ser: Cys-&gt;Ser substitution.
Definition: cv.hpp:7508
UNIMOD_Label_13C_6_15N_2_
Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.
Definition: cv.hpp:6893
UNIMOD_Hex_3_HexNAc_2_P_1_
Hex(3)HexNAc(2)P(1): Hex3HexNAc2P1.
Definition: cv.hpp:6788
UO_parts_per_hundred
parts per hundred: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:9794
UNIMOD_Methylamine
Methylamine: Michael addition with methylamine.
Definition: cv.hpp:7058
MS_alternate_single_letter_codes
alternate single letter codes: List of standard residue one letter codes which are used to replace a ...
Definition: cv.hpp:4322
MS_mz5_file
mz5 file: mz5 file format, modeled after mzML.
Definition: cv.hpp:5891
MS_number_of_peaks_submitted
number of peaks submitted: The number of peaks from the original peaks listed that were submitted to ...
Definition: cv.hpp:3671
UNIMOD_LG_anhydrolactam
LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.
Definition: cv.hpp:8264
MS_PEAKS_Node
PEAKS Node: PEAKS Node software for high throughput data analysis.
Definition: cv.hpp:6098
MS_TruTOF
TruTOF: LECO bench-top GC time-of-flight mass spectrometer.
Definition: cv.hpp:5660
MS_database_SwissProt
database SwissProt:
Definition: cv.hpp:3611
UNIMOD_Ala__Ser
Ala-&gt;Ser: Ala-&gt;Ser substitution.
Definition: cv.hpp:7484
MS_spectrum
spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical ...
Definition: cv.hpp:1748
MS_direct_inlet
direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable p...
Definition: cv.hpp:278
UO_kilogram_meter_per_second
kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass obje...
Definition: cv.hpp:9572
MS_sprayed_MALDI_matrix_preparation
sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.
Definition: cv.hpp:3050
MS_frag__a_ion___H2O
frag: a ion - H2O: Fragmentation information, type of product: a ion without water.
Definition: cv.hpp:3974
UNIMOD_Lys__His
Lys-&gt;His: Lys-&gt;His substitution.
Definition: cv.hpp:8756
MS_isolation_window_lower_limit_OBSOLETE
isolation window lower limit: The lowest m/z being isolated in an isolation window.
Definition: cv.hpp:2909
MS_APCI
APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric ...
Definition: cv.hpp:323
MS_time_unit_OBSOLETE
time unit: Time Unit.
Definition: cv.hpp:2099
MS_retention_time_alignment
retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free prote...
Definition: cv.hpp:2744
MS_spectrum_identifier_nativeID_format
spectrum identifier nativeID format: spectrum=xsd:nonNegativeInteger.
Definition: cv.hpp:2843
MS_____DE__
(?=[DE]):
Definition: cv.hpp:4082
MS_FT_ICR
FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on th...
Definition: cv.hpp:368
UNIMOD_Ser__Xle
Ser-&gt;Xle: Ser-&gt;Leu/Ile substitution.
Definition: cv.hpp:7808
MS_stable_ion
stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate pri...
Definition: cv.hpp:1547
MS_ProteinExtractor_MinNumberOfPeptides
ProteinExtractor:MinNumberOfPeptides:
Definition: cv.hpp:4520
UO_radiation_unit
radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radi...
Definition: cv.hpp:9677
UNIMOD_NA_OA_NO2
NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.
Definition: cv.hpp:7898
UNIMOD_Succinyl
Succinyl: Succinic anhydride labeling reagent light form (N-term &amp; K).
Definition: cv.hpp:6611
MS_kinetic_energy_analyzer
kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retar...
Definition: cv.hpp:1334
MS_scan_mode_OBSOLETE
scan mode: OBSOLETE.
Definition: cv.hpp:203
UNIMOD_GPIanchor
GPIanchor: Glycosylphosphatidylinositol.
Definition: cv.hpp:7187
MS_spectrum_from_ProteinScape_database_nativeID_format
spectrum from ProteinScape database nativeID format: databasekey=xsd:long.
Definition: cv.hpp:4832
MS_product_ion
product ion: An ion formed as the product of a reaction involving a particular precursor ion...
Definition: cv.hpp:1436
UO_nanomole
nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol...
Definition: cv.hpp:9422
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5384
UNIMOD_CLIP_TRAQ_3
CLIP_TRAQ_3: CLIP_TRAQ_3.
Definition: cv.hpp:7472
MS_number_of_peptide_seqs_compared_to_each_spectrum
number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum...
Definition: cv.hpp:3428
MS_multiple_reaction_monitoring_OBSOLETE
multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring...
Definition: cv.hpp:443
UNIMOD_HPG
HPG: Hydroxyphenylglyoxal arginine.
Definition: cv.hpp:6815
MS_kinetic_energy_release_distribution
kinetic energy release distribution: Distribution of values of translational kinetic energy release f...
Definition: cv.hpp:1124
MS_ChromaTOF_software
ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments...
Definition: cv.hpp:5645
MS_highest_observed_m_z
highest observed m/z: Highest m/z value observed in the m/z array.
Definition: cv.hpp:2027
MS_Phenyx_MinPepzscore
Phenyx:MinPepzscore:
Definition: cv.hpp:4394
MS_apex_IV
apex IV: Bruker Daltonics&#39; apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR. ...
Definition: cv.hpp:623
MS_SpectrumMill_directories
SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format...
Definition: cv.hpp:4934
MS_software_vendor
software vendor:
Definition: cv.hpp:4061
MS_source_interface_model
source interface model: The source interface model.
Definition: cv.hpp:6047
MS_detector
detector: The device that detects ions.
Definition: cv.hpp:1790
MS_FAIMS_CV
FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS t...
Definition: cv.hpp:4979
UNIMOD_Ethylphosphate
Ethylphosphate: O-Ethylphosphorylation.
Definition: cv.hpp:7931
MS_ISQ
ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.
Definition: cv.hpp:5972
UO_nanosecond
nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s...
Definition: cv.hpp:9743
MS_ions_series_considered_in_search
ions series considered in search: The description of the ion fragment series (including charges and n...
Definition: cv.hpp:3515
UNIMOD_Butyryl
Butyryl: Butyryl.
Definition: cv.hpp:9182
UNIMOD_Asn__Glu
Asn-&gt;Glu: Asn-&gt;Glu substitution.
Definition: cv.hpp:8819
UNIMOD_TMT
TMT: Native Tandem Mass Tag®.
Definition: cv.hpp:7964
UNIMOD_Glu__Asp
Glu-&gt;Asp: Glu-&gt;Asp substitution.
Definition: cv.hpp:7550
MS_absorption_chromatogram
absorption chromatogram: The measurement of light absorbed by the sample as a function of the retenti...
Definition: cv.hpp:2975
MS_param__b_ion_NH3
param: b ion-NH3:
Definition: cv.hpp:3746
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_MS_Order_Mismatch
ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from differen...
Definition: cv.hpp:5138
UNIMOD_NHS_LC_Biotin
NHS-LC-Biotin: NHS-LC-Biotin.
Definition: cv.hpp:6629
UO_counts_per_minute
counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissio...
Definition: cv.hpp:9740
MS_ProteomeDiscoverer_Mascot_Mascot_Server_URL
ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server...
Definition: cv.hpp:5195
MS_source
source: Terms to describe the source.
Definition: cv.hpp:1808
MS_frag__w_ion
frag: w ion: Fragmentation information, type of product: w ion.
Definition: cv.hpp:3986
MS_database_local_file_path_OBSOLETE
database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search...
Definition: cv.hpp:3380
UNIMOD_Pro__Lys
Pro-&gt;Lys: Pro-&gt;Lys substitution.
Definition: cv.hpp:8861
UNIMOD_Glu__Asn
Glu-&gt;Asn: Glu-&gt;Asn substitution.
Definition: cv.hpp:8600
UNIMOD_Asp__Tyr
Asp-&gt;Tyr: Asp-&gt;Tyr substitution.
Definition: cv.hpp:7535
MS_first_stability_region
first stability region: The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole.
Definition: cv.hpp:1328
UO_catalytic_activity_unit
catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst...
Definition: cv.hpp:9656
MS_API_4000
API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.
Definition: cv.hpp:641
MS_metabolic_labeling_14N___15N_quantitation_analysis
metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light vers...
Definition: cv.hpp:5765
MS_X_Tandem_expect
X!Tandem:expect: The X!Tandem expectation value.
Definition: cv.hpp:4232
MS_target_SRM_transition
target SRM transition: A transition used to target a specific compound that may be in the sample...
Definition: cv.hpp:6287
UNIMOD_Label_2H_9_13C_6_15N_2_
Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.
Definition: cv.hpp:7907
UNIMOD_PET
PET: Phosphorylation to pyridyl thiol.
Definition: cv.hpp:6905
MS_ProteinScape_ProfoundProbability
ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.
Definition: cv.hpp:4730
UO_pi
pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3...
Definition: cv.hpp:9857
UO_micrometer
micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.
Definition: cv.hpp:9350
MS_Xevo_TQD
Xevo TQD: Waters quadrupole based.
Definition: cv.hpp:5621
UNIMOD_Asp__Arg
Asp-&gt;Arg: Asp-&gt;Arg substitution.
Definition: cv.hpp:8573
UNIMOD_Pro__Gly
Pro-&gt;Gly: Pro-&gt;Gly substitution.
Definition: cv.hpp:8858
MS_SpectraST
SpectraST: SpectraST was used to analyze the spectra.
Definition: cv.hpp:4670
MS_ProteomeDiscoverer_Static_Modifications
ProteomeDiscoverer:Static Modifications: Static Modification to all occurrences of a named amino acid...
Definition: cv.hpp:5183
MS_Sequest_SQT
Sequest SQT: Source file for this mzIdentML was a Sequest SQT.
Definition: cv.hpp:4922
MS_emission_chromatogram
emission chromatogram: The measurement of light emitted by the sample as a function of the retention ...
Definition: cv.hpp:2978
MS_Voyager_DE_PRO
Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.
Definition: cv.hpp:809
UNIMOD_CresylSaligeninPhosphate
CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.
Definition: cv.hpp:9116
MS_vacuum_drying_MALDI_sample_preparation
vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method...
Definition: cv.hpp:6221
UNIMOD_UgiJoullie
UgiJoullie: Side reaction of HisTag.
Definition: cv.hpp:9152
MS_combined_pmf___ms_ms_search
combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS/MS ...
Definition: cv.hpp:4988
MS_pulsed_q_dissociation
pulsed q dissociation: A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
Definition: cv.hpp:2294
UNIMOD_Biotin_Thermo_21345
Biotin:Thermo-21345: Was PentylamineBiotin.
Definition: cv.hpp:8045
UNIMOD_Trp__Gly
Trp-&gt;Gly: Trp-&gt;Gly substitution.
Definition: cv.hpp:7868
UNIMOD_BDMAPP
BDMAPP: Mass Defect Tag on lysine e-amino.
Definition: cv.hpp:7892
MS_spark_ionization
spark ionization: The formation of ions from a solid material by an intermittent electrical discharge...
Definition: cv.hpp:1625
MS_spectral_count_proteingroup_level_quantitation
spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation...
Definition: cv.hpp:6326
MS_instrument_vendor
instrument vendor:
Definition: cv.hpp:4067
UNIMOD_AEBS
AEBS: Aminoethylbenzenesulfonylation.
Definition: cv.hpp:6932
UNIMOD_Ub_Br2
Ub-Br2: Ub Bromide probe addition.
Definition: cv.hpp:9119
UNIMOD_Ser__Met
Ser-&gt;Met: Ser-&gt;Met substitution.
Definition: cv.hpp:8948
MS_quistor
quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap...
Definition: cv.hpp:1298
UO_centimeter
centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
Definition: cv.hpp:9344
MS_ProteinExtractor_GenerateNonRedundant
ProteinExtractor:GenerateNonRedundant:
Definition: cv.hpp:4508
MS_ProteomeDiscoverer_Enzyme_Name_OBSOLETE
ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.
Definition: cv.hpp:5210
MS_frag__immonium_ion
frag: immonium ion: Fragmentation information, type of product: immonium ion.
Definition: cv.hpp:3989
MS_particle_beam
particle beam: Method for generating ions from a solution of an analyte.
Definition: cv.hpp:308
MS_distonic_ion
distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin canno...
Definition: cv.hpp:1499
MS_frag__b_ion
frag: b ion: Fragmentation information, type of product: b ion.
Definition: cv.hpp:3938
UNIMOD_sulfo_amino
sulfo+amino: Aminotyrosine with sulfation.
Definition: cv.hpp:8369
UNIMOD_Lys__Trp
Lys-&gt;Trp: Lys-&gt;Trp substitution.
Definition: cv.hpp:8768
UNIMOD_Xle__Val
Xle-&gt;Val: Leu/Ile-&gt;Val substitution.
Definition: cv.hpp:7658
UO_day
day: A time unit which is equal to 24 hours.
Definition: cv.hpp:9398
UNIMOD_Biotin_PEO_Amine
Biotin-PEO-Amine: Biotin polyethyleneoxide amine.
Definition: cv.hpp:6956
MS_6520_Quadrupole_Time_of_Flight_LC_MS
6520 Quadrupole Time-of-Flight LC/MS: The 6520 Quadrupole Time-of-Flight LC/MS is a Agilent liquid ch...
Definition: cv.hpp:2540
MS_FAB
FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused...
Definition: cv.hpp:347
MS_fast_atom_bombardment_ionization
fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam ...
Definition: cv.hpp:344
UNIMOD_Ser__Pro
Ser-&gt;Pro: Ser-&gt;Pro substitution.
Definition: cv.hpp:7796
UNIMOD_Cys__Lys
Cys-&gt;Lys: Cys-&gt;Lys substitution.
Definition: cv.hpp:8531
MS_Unify
Unify: Waters software for liquid chromatography and mass spectrometry acquisition, processing, data analysis and data management.
Definition: cv.hpp:5633
UO_femtoliter
femtoliter: A volume unit which is equal to 10^[-15] L.
Definition: cv.hpp:9611
MS_AB_SCIEX_TOF_TOF_database
AB SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database...
Definition: cv.hpp:4682
MS_CXP
CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole in...
Definition: cv.hpp:6086
MS_raw_data_file
raw data file: Describes the type of file and its content.
Definition: cv.hpp:2180
MS_no_threshold
no threshold: In case no threshold was used.
Definition: cv.hpp:4721
MS_METLIN
METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human...
Definition: cv.hpp:2567
UO_rotational_frequency_unit
rotational frequency unit: A unit which is a standard measure of the number of rotations in a given t...
Definition: cv.hpp:9473
UNIMOD_Phosphopantetheine
Phosphopantetheine: Phosphopantetheine.
Definition: cv.hpp:6569
MS_sampling_frequency
sampling frequency: The rate of signal sampling (measurement) with respect to time.
Definition: cv.hpp:182
UNIMOD_Carboxy
Carboxy: Carboxylation.
Definition: cv.hpp:6980
UNIMOD_Label_13C_6_15N_4_
Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.
Definition: cv.hpp:6908
MS_Waters_nativeID_format
Waters nativeID format: function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegat...
Definition: cv.hpp:2819
MS_binary_data_compression_type
binary data compression type: Compression Type.
Definition: cv.hpp:2165
MS_ion_role
ion role: Ion Role.
Definition: cv.hpp:1964
MS_analysis_software
analysis software: Analysis software.
Definition: cv.hpp:4601
UNIMOD_Asp__Met
Asp-&gt;Met: Asp-&gt;Met substitution.
Definition: cv.hpp:8564
MS_Laser_Desorption_OBSOLETE
Laser Desorption: The formation of ions through the interaction of a laser with a material or with ga...
Definition: cv.hpp:1130
UNIMOD_Arg__Asp
Arg-&gt;Asp: Arg-&gt;Asp substitution.
Definition: cv.hpp:8918
UNIMOD_Carbamyl
Carbamyl: Carbamylation.
Definition: cv.hpp:6464
MS_X_Tandem
X!Tandem: X!Tandem was used to analyze the spectra.
Definition: cv.hpp:4667
UNIMOD_dNIC
dNIC: Deuterated Nicotinic Acid.
Definition: cv.hpp:7913
UNIMOD_Phycocyanobilin
Phycocyanobilin: Phycocyanobilin.
Definition: cv.hpp:7166
UNIMOD_NeuGc
NeuGc: N-glycoyl neuraminic acid.
Definition: cv.hpp:9221
UNIMOD_IBTP
IBTP: Thio Ether Formation - BTP Adduct.
Definition: cv.hpp:6677
MS_param__b_ion
param: b ion:
Definition: cv.hpp:3653
UNIMOD_Ser__Val
Ser-&gt;Val: Ser-&gt;Val substitution.
Definition: cv.hpp:8954
MS_MaxQuant_PTM_Delta_Score
MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highes...
Definition: cv.hpp:6209
MS_inclusive_low_intensity_threshold
inclusive low intensity threshold: Threshold at or below which some action is taken.
Definition: cv.hpp:2888
MS_Scaffold__Minimum_Peptide_Count
Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted...
Definition: cv.hpp:4958
UO_gram_per_liter
gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volum...
Definition: cv.hpp:9818
MS_sum_of_MatchedFeature_values
sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quanti...
Definition: cv.hpp:5795
UNIMOD_GlyGly
GlyGly: Ubiquitinylation residue.
Definition: cv.hpp:6680
MS_constant
constant: When resolution is constant with respect to m/z.
Definition: cv.hpp:410
MS_Platform_ICP
Platform ICP: Waters Platform ICP MS.
Definition: cv.hpp:752
MS_modified_peptide_sequence
modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compos...
Definition: cv.hpp:3209
UNIMOD_Dicarbamidomethyl
Dicarbamidomethyl: Double Carbamidomethylation.
Definition: cv.hpp:9185
MS_SymBiot_I
SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.
Definition: cv.hpp:782
MS_Bruker_U2_file
Bruker U2 file: Bruker HyStar U2 file format.
Definition: cv.hpp:2987
MS_enhanced_resolution_scan
enhanced resolution scan (zoom scan): Special scan mode, where data with improved resoltuion is acqui...
Definition: cv.hpp:1937
MS_HiRes_ESI
HiRes ESI: IonSpec HiResESI MS.
Definition: cv.hpp:686
UO_cubic_meter_per_mole
cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a s...
Definition: cv.hpp:9566
UO_square_meter
square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter lon...
Definition: cv.hpp:9539
UNIMOD_Ammonia_loss
Ammonia-loss: Loss of ammonia.
Definition: cv.hpp:7163
UNIMOD_AHA_Alkyne_KDDDD
AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).
Definition: cv.hpp:8378
MS_DB_source_UniProt
DB source UniProt:
Definition: cv.hpp:4028
UO_unit_per_liter
unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount p...
Definition: cv.hpp:9830
MS_quantification_datatype
quantification datatype: The data type of the value reported in a QuantLayer for a feature...
Definition: cv.hpp:5663
MS_OMSSA_csv_file
OMSSA csv file: Source file for this mzIdentML was an OMSSA csv file.
Definition: cv.hpp:4439
MS_frag__x_ion___NH3
frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.
Definition: cv.hpp:4799
MS_Sequest_ProcessCV
Sequest:ProcessCV: Branch containing the CV terms for Sequest View / Process Input Parameters...
Definition: cv.hpp:3560
MS_SWIFT
SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ion...
Definition: cv.hpp:1244
MS_Phenyx_ID
Phenyx:ID:
Definition: cv.hpp:4409
UNIMOD_Tripalmitate
Tripalmitate: N-acyl diglyceride cysteine.
Definition: cv.hpp:6575
MS_GC_IsoLink
GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.
Definition: cv.hpp:2456
UNIMOD_Carboxyethyl
Carboxyethyl: Carboxyethyl.
Definition: cv.hpp:7148
MS_Sequest_sf
Sequest:sf: The SEQUEST result &#39;Sf&#39;.
Definition: cv.hpp:3779
UNIMOD_HexNAc_2_dHex_2_
HexNAc(2)dHex(2): HexNAc2dHex2.
Definition: cv.hpp:6755
UO_plaque_forming_unit
plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given vo...
Definition: cv.hpp:9926
MS_database_type
database type: Database containing amino acid or nucleic acid sequences.
Definition: cv.hpp:3392
MS_FlexControl
FlexControl: Bruker software for data acquisition.
Definition: cv.hpp:2069
MS_contact_URL
contact URL: Uniform Resource Locator related to the contact person or organization.
Definition: cv.hpp:2255
MS_total_ion_current
total ion current: The sum of all the separate ion currents carried by the ions of different m/z cont...
Definition: cv.hpp:1247
MS_ProteomeDiscoverer_Spectrum_Grouper_Precursor_Mass_Criterion
ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the give...
Definition: cv.hpp:5144
MS_MS2_file
MS2 file: MS2 file.
Definition: cv.hpp:4628
UNIMOD_Delta_H_2_C_5_
Delta:H(2)C(5): MDA adduct +62.
Definition: cv.hpp:7022
UNIMOD_ICAT_G
ICAT-G: Gygi ICAT(TM) d0.
Definition: cv.hpp:6473
MS_below_precursor_intensity_dominance_charge_state_calculation
below precursor intensity dominance charge state calculation: Infers charge state as single or amibig...
Definition: cv.hpp:2849
MS_date___time_search_performed_OBSOLETE
date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actu...
Definition: cv.hpp:3437
MS_Mascot_Distiller
Mascot Distiller: Mascot Distiller.
Definition: cv.hpp:4703
MS_ProteinExtractor
ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker&#39;s ProteinSca...
Definition: cv.hpp:4700
UNIMOD_glucosone
glucosone: Condensation product of glucosone.
Definition: cv.hpp:8336
MS_magnetic_field_strength
magnetic field strength: A property of space that produces a force on a charged particle equal to qv ...
Definition: cv.hpp:167
MS_embl_em
embl em: EMBL entry format.
Definition: cv.hpp:4298
MS_retention_time_window_upper_offset
retention time window upper offset: The extent of the retention time window in time units above the t...
Definition: cv.hpp:3299
UO_millisecond
millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.
Definition: cv.hpp:9383
UNIMOD_Arg__Phe
Arg-&gt;Phe: Arg-&gt;Phe substitution.
Definition: cv.hpp:8933
MS_MS_MS_in_Space
MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z an...
Definition: cv.hpp:1415
UNIMOD_Gly__Tyr
Gly-&gt;Tyr: Gly-&gt;Tyr substitution.
Definition: cv.hpp:8687
MS_esquireControl
esquireControl: Bruker software for data acquisition.
Definition: cv.hpp:2672
UO_milligram_per_liter
milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by...
Definition: cv.hpp:10112
MS_KERD
KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy re...
Definition: cv.hpp:1127
MS_retention_time_normalization_standard
retention time normalization standard: A standard providing the retention times at which a set of ref...
Definition: cv.hpp:3248
MS_ProteinProspector_expectation_value
ProteinProspector:expectation value: The ProteinProspector result &#39;Expectation value&#39;.
Definition: cv.hpp:6413
MS_spin_coating_MALDI_sample_preparation
spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.
Definition: cv.hpp:6236
UNIMOD_GIST_Quat
GIST-Quat: Quaternary amine labeling reagent light form (N-term &amp; K).
Definition: cv.hpp:6599
MS_ion_energy_loss_spectrum
ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a...
Definition: cv.hpp:1691
UNIMOD_Ala__Val
Ala-&gt;Val: Ala-&gt;Val substitution.
Definition: cv.hpp:7502
UNIMOD_Ser__Ala
Ser-&gt;Ala: Ser-&gt;Ala substitution.
Definition: cv.hpp:7784
UNIMOD_His__Glu
His-&gt;Glu: His-&gt;Glu substitution.
Definition: cv.hpp:8696
MS_ultrafleXtreme
ultrafleXtreme: Bruker Daltonics&#39; ultrafleXtreme: MALDI TOF.
Definition: cv.hpp:4871
MS_Sequence_database_filter_types
Sequence database filter types: Filter types which are used to filter a sequence database.
Definition: cv.hpp:4772
MS_Mascot_UseUnigeneClustering
Mascot:UseUnigeneClustering:
Definition: cv.hpp:4214
MS_Skyline
Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of...
Definition: cv.hpp:3314
UNIMOD_QQQTGG
QQQTGG: SUMOylation by SUMO-2/3.
Definition: cv.hpp:8123
MS_OMEGA
OMEGA: IonSpec OMEGA MS.
Definition: cv.hpp:743
MS_ProteomeDiscoverer_Mascot_Weight_of_C_Ions
ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching...
Definition: cv.hpp:5483
MS_ProteomeDiscoverer_Use_Neutral_Loss_b_Ions
ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for ...
Definition: cv.hpp:5303
UNIMOD_Label_13C_5_
Label:13C(5): 13C(5) Silac label.
Definition: cv.hpp:8021
MS_Profound_ClusterRank
Profound:ClusterRank: The Profound cluster rank.
Definition: cv.hpp:4739
MS_CLINPROT_micro
CLINPROT micro: Bruker CLINPROT micro software.
Definition: cv.hpp:2636
MS_Sequest_PeptideNumber
Sequest:PeptideNumber: The SEQUEST result &#39;#&#39; in out file (peptide).
Definition: cv.hpp:3920
UO_kibibyte
kibibyte: An information unit which is equal to 1024 B.
Definition: cv.hpp:10028
MS_counts_per_second
counts per second: The number of counted events observed per second in one or a group of elements of ...
Definition: cv.hpp:2981
UO_poise
poise: A viscosity unit which is equal to one dyne second per square centimeter.
Definition: cv.hpp:10067
MS_MS1_label_based_analysis
MS1 label-based analysis: MS1 label-based analysis.
Definition: cv.hpp:6329
MS_linked_scan
linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer ...
Definition: cv.hpp:1397
MS_MS1_feature_maximum_intensity
MS1 feature maximum intensity: Maximum intensity of MS1 feature.
Definition: cv.hpp:5777
UO_power_unit
power unit: A unit which is a standard measure power or the rate of doing work.
Definition: cv.hpp:9638
MS_hybrid_mass_spectrometer
hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perfo...
Definition: cv.hpp:1271
MS_ProteomeDiscoverer_SEQUEST_Weight_of_y_Ions
ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative fac...
Definition: cv.hpp:5333
UO_volt_hour
volt-hour: A magnetic flux unit which is equal to 3600 Wb.
Definition: cv.hpp:9980
MS_pep_global_FDR
pep:global FDR: Estimation of global false discovery rate of the peptides.
Definition: cv.hpp:4334
MS______KR_____P_
(?&lt;=[KR])(?!P):
Definition: cv.hpp:3827
MS_ACQUITY_UPLC_I_Class
ACQUITY UPLC I-Class: Waters LC-system.
Definition: cv.hpp:5540
UNIMOD_Gly
Gly: Addition of Glycine.
Definition: cv.hpp:9134
MS_sophisticated_numerical_annotation_procedure
sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum...
Definition: cv.hpp:6254
MS_area_normalization
area normalization: Normalization of areas below the curves.
Definition: cv.hpp:6260
MS_ion_chemical_type
ion chemical type: Ion Type.
Definition: cv.hpp:1970
UO_curie
curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioacti...
Definition: cv.hpp:9695
UNIMOD_Label_13C_6__Acetyl
Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.
Definition: cv.hpp:8075
MS_IKES
IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated acc...
Definition: cv.hpp:1097
MS_LTQ_XL
LTQ XL: Thermo Scientific LTQ XL MS.
Definition: cv.hpp:3098
UNIMOD_IGBP_13C_2_
IGBP:13C(2): Heavy IDBEST tag for quantitation.
Definition: cv.hpp:7391
UNIMOD_cysTMT
cysTMT: Native cysteine-reactive Tandem Mass Tag®.
Definition: cv.hpp:8339
MS_technical_replicate
technical replicate: The study variable is &#39;technical replicate&#39;. The string value denotes the catego...
Definition: cv.hpp:5672
MS_OMSSA_pvalue
OMSSA:pvalue: OMSSA p-value.
Definition: cv.hpp:4229
MS_ion_desolvation
ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heatin...
Definition: cv.hpp:1583
UNIMOD_Dibromo
Dibromo: Dibromo.
Definition: cv.hpp:7466
UNIMOD_Trp__Xle
Trp-&gt;Xle: Trp-&gt;Leu/Ile substitution.
Definition: cv.hpp:7871
MS_Linked_Scan_at_Constant_B_1__E_E0___1_2___E
Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that inco...
Definition: cv.hpp:1409
MS_ProteinExtractor_SequestPeptideScoreThreshold
ProteinExtractor:SequestPeptideScoreThreshold:
Definition: cv.hpp:4541
MS_quantitation_software_comment___customizations
quantitation software comment / customizations: Quantitation software comment or any customizations t...
Definition: cv.hpp:5744
UNIMOD_Lys__CamCys
Lys-&gt;CamCys: Lys-&gt;Cys substitution and carbamidomethylation.
Definition: cv.hpp:8180
MS_Sequest_modeCV
Sequest:modeCV: Branch containing the CV terms for Sequest Mode Input Parameters. ...
Definition: cv.hpp:3629
UNIMOD_EDT_maleimide_PEO_biotin
EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.
Definition: cv.hpp:6632
MS_Bruker_U2_nativeID_format
Bruker U2 nativeID format: declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=...
Definition: cv.hpp:3008
MS_Trypsin
Trypsin:
Definition: cv.hpp:4019
MS_unimolecular_dissociation
unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one...
Definition: cv.hpp:1742
MS_protXML_file
protXML file: Source file for this mzIdentML was a protXML file.
Definition: cv.hpp:4499
MS_fragment_ion_m_z
fragment ion m/z (product ion m/z): The m/z of the product ion.
Definition: cv.hpp:3944
UNIMOD_His__Asn
His-&gt;Asn: His-&gt;Asn substitution.
Definition: cv.hpp:7076
UNIMOD_Methylpyrroline
Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.
Definition: cv.hpp:7292
UNIMOD_Glu__Phe
Glu-&gt;Phe: Glu-&gt;Phe substitution.
Definition: cv.hpp:8588
MS_Channeltron_Detector
Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multipl...
Definition: cv.hpp:473
UNIMOD_Cys__Pro
Cys-&gt;Pro: Cys-&gt;Pro substitution.
Definition: cv.hpp:8540
UNIMOD_SulfanilicAcid_13C_6_
SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.
Definition: cv.hpp:6950
UNIMOD_Hex_3_HexNAc_2_
Hex(3)HexNAc(2): Hex3HexNAc2.
Definition: cv.hpp:6782
MS_search_database_details
search database details: Details about the database searched.
Definition: cv.hpp:3371
MS_charge_transfer_reaction
charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the c...
Definition: cv.hpp:1664
MS_modulation_time
modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional se...
Definition: cv.hpp:6404
UNIMOD_Ser__Phe
Ser-&gt;Phe: Ser-&gt;Phe substitution.
Definition: cv.hpp:7781
UO_milliliter
milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
Definition: cv.hpp:9593
MS_decoy_DB_from_EST
decoy DB from EST:
Definition: cv.hpp:4127
MS_attenuation
attenuation: Describes the reduction of the intensity of the laser beam energy.
Definition: cv.hpp:3080
UNIMOD_Met__Glu
Met-&gt;Glu: Met-&gt;Glu substitution.
Definition: cv.hpp:8783
UNIMOD_Dimethyl_2H_6_13C_2_
Dimethyl:2H(6)13C(2): Dimethylated arginine.
Definition: cv.hpp:7046
UNIMOD_GIST_Quat_2H_6_
GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term &amp; K.
Definition: cv.hpp:6605
MS_database_IPI_rat
database IPI_rat:
Definition: cv.hpp:4100
MS_ProteomeDiscoverer_Non_Fragment_Filter_Mass_Window_Offset
ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge r...
Definition: cv.hpp:5114
MS_database_IPI_chicken
database IPI_chicken:
Definition: cv.hpp:4106
UNIMOD_NO_SMX_SMCT
NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.
Definition: cv.hpp:7979
UO_dots_per_inch
dots per inch: A spatial resolution unit which is a standard measure of the printing resolution...
Definition: cv.hpp:10013
MS_theoretical_mass
theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modificatio...
Definition: cv.hpp:3650
MS_ProteomeDiscoverer_Scan_Type_OBSOLETE
ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM)...
Definition: cv.hpp:5090
MS_Sequest_Uniq
Sequest:Uniq:
Definition: cv.hpp:3773
MS_Clostripain
Clostripain (Arg-C): Endoproteinase Arg-C.
Definition: cv.hpp:4154
MS_selected_ion_current_chromatogram
selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a...
Definition: cv.hpp:2390
UNIMOD_ICAT_C
ICAT-C: Applied Biosystems cleavable ICAT(TM) light.
Definition: cv.hpp:6644
MS_DeBunker
DeBunker: DeBunker software.
Definition: cv.hpp:6173
MS_mean_of_spectra
mean of spectra: Spectra is combined by calculating the mean of the spectra.
Definition: cv.hpp:2174
MS_Cliquid
Cliquid: AB SCIEX Cliquid software for data analysis and quantitation.
Definition: cv.hpp:2525
UNIMOD_Phe__Asn
Phe-&gt;Asn: Phe-&gt;Asn substitution.
Definition: cv.hpp:8642
MS_reference_ion
reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by...
Definition: cv.hpp:1544
UNIMOD_Asp__His
Asp-&gt;His: Asp-&gt;His substitution.
Definition: cv.hpp:7526
MS_constant_neutral_gain_spectrum
constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain...
Definition: cv.hpp:1379
UNIMOD_Dimethyl_2H_4_
Dimethyl:2H(4): DiMethyl-CHD2.
Definition: cv.hpp:6842
MS_ProteomeDiscoverer_Reference_Database_OBSOLETE
ProteomeDiscoverer:Reference Database: Full path database name.
Definition: cv.hpp:5453
UO_mebibyte
mebibyte: An information unit which is equal to 1024 KiB.
Definition: cv.hpp:10031
MS_ProteomeDiscoverer_Mascot_Protein_Relevance_Factor
ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a ...
Definition: cv.hpp:5234
MS_nominal_mass
nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope o...
Definition: cv.hpp:926
MS_Analyst
Analyst: AB SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.
Definition: cv.hpp:2102
MS_ion_neutral_species_exchange_reaction
ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the...
Definition: cv.hpp:1706
UNIMOD_Tyr__Glu
Tyr-&gt;Glu: Tyr-&gt;Glu substitution.
Definition: cv.hpp:9062
MS_collision_gas
collision gas: An inert gas used for collisional excitation. The term target gas is not recommended...
Definition: cv.hpp:1670
MS_LCQ_Deca_XP_Plus
LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.
Definition: cv.hpp:707
MS_param__immonium_ion
param: immonium ion:
Definition: cv.hpp:4043
UO_exposure_unit
exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radia...
Definition: cv.hpp:9689
MS_native_source_path
native source path: The original source path used for directory-based sources.
Definition: cv.hpp:6416
MS_quantification_object_attribute
quantification object attribute: Attributes describing the details of an object relevant for reportin...
Definition: cv.hpp:5666
UO_milliunits_per_milliliter
milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of a...
Definition: cv.hpp:10130
MS_Bruker_FID_nativeID_format
Bruker FID nativeID format: file=xsd:IDREF.
Definition: cv.hpp:2831
MS_Mascot_ProteinGrouping
Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of &#39;...
Definition: cv.hpp:5525
MS_Sequest_ShowFragmentIons
Sequest:ShowFragmentIons:
Definition: cv.hpp:3443
MS_FileConverter
FileConverter: Converts between different MS file formats.
Definition: cv.hpp:2777
UNIMOD_Phe__Gly
Phe-&gt;Gly: Phe-&gt;Gly substitution.
Definition: cv.hpp:8630
MS_Mascot_MGF_file
Mascot MGF file:
Definition: cv.hpp:3509
UNIMOD_Met_loss_Acetyl
Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new...
Definition: cv.hpp:8009
MS_microelectrospray
microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is...
Definition: cv.hpp:1601
UNIMOD_O_Dimethylphosphate
O-Dimethylphosphate: O-Dimethylphosphorylation.
Definition: cv.hpp:7922
UNIMOD_MTSL
MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL)...
Definition: cv.hpp:8201
UNIMOD_ICPL_2H_4_
ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.
Definition: cv.hpp:7901
MS_group_member_with_undefined_relationship_OR_ortholog_protein
group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relations...
Definition: cv.hpp:5027
MS_percolator_PEP
percolator:PEP: Posterior error probability.
Definition: cv.hpp:4718
UNIMOD_Gly__Cys
Gly-&gt;Cys: Gly-&gt;Cys substitution.
Definition: cv.hpp:7595
UNIMOD_Argbiotinhydrazide
Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.
Definition: cv.hpp:7067
MS_taxonomy_nomenclature_OBSOLETE
taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated ...
Definition: cv.hpp:3569
MS_scan_m_z_range_
scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions. ...
Definition: cv.hpp:1340
MS_ProteomeDiscoverer_2__Dynamic_Modification
ProteomeDiscoverer:2. Dynamic Modification: Determine 2nd dynamic post-translational modifications (P...
Definition: cv.hpp:5411
MS_search_statistics
search statistics: The details of the actual run of the search.
Definition: cv.hpp:3839
MS_quantitation_analysis_summary
quantitation analysis summary: The overall workflow of this quantitation report.
Definition: cv.hpp:5747
UNIMOD_Gly__Asn
Gly-&gt;Asn: Gly-&gt;Asn substitution.
Definition: cv.hpp:8675
MS_Phenyx_AC_Score
Phenyx:AC Score:
Definition: cv.hpp:4400
MS_X_Tandem_xml_file
X!Tandem xml file: Source file for this mzIdentML was an X!Tandem xml file.
Definition: cv.hpp:4445
UNIMOD_PhosphoUridine
PhosphoUridine: Uridine phosphodiester.
Definition: cv.hpp:7247
MS_database_IPI_human
database IPI_human:
Definition: cv.hpp:3725
UNIMOD_Met__Hsl
Met-&gt;Hsl: Homoserine lactone.
Definition: cv.hpp:6482
MS_ProteomeDiscoverer_Mascot_Weight_of_Z_Ions
ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching...
Definition: cv.hpp:5501
UNIMOD_Asn__Gln
Asn-&gt;Gln: Asn-&gt;Gln substitution.
Definition: cv.hpp:8834
MS_Sequest_ViewCV
Sequest:ViewCV: Branch containing the CV terms for Sequest View Input Parameters. ...
Definition: cv.hpp:3359
MS_MyriMatch_mzFidelity
MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental...
Definition: cv.hpp:5012
MS_Sequest_Consensus
Sequest:Consensus: Specify depth as value of the CVParam!
Definition: cv.hpp:3446
MS_constant_neutral_mass_loss_spectrum
constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all produc...
Definition: cv.hpp:1388
UNIMOD_Xlink_DSS
Xlink:DSS: Monolink of DSS/BS3 crosslinker to Lys or N-terminus.
Definition: cv.hpp:8426
MS_Pepitome
Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra. ...
Definition: cv.hpp:5000
MS_retention_time
retention time: A measure of the interval relative to the beginning of a mass spectrometric run when ...
Definition: cv.hpp:3227
UNIMOD_Iodo
Iodo: Iodination.
Definition: cv.hpp:6701
MS_data_processing_software
data processing software: Conversion software.
Definition: cv.hpp:4604
MS_autodetachment
autodetachment: The formation of a neutral when a negative ion in a disrtete state with an energy gre...
Definition: cv.hpp:1562
UNIMOD_Furan
Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.
Definition: cv.hpp:9158
UNIMOD_Hex_2_HexNAc_2_Pent_1_
Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.
Definition: cv.hpp:6776
MS_highest_observed_wavelength
highest observed wavelength: Highest wavelength observed in an EMR spectrum.
Definition: cv.hpp:2357
MS_AB_SCIEX_TOF_TOF_T2D_file
AB SCIEX TOF/TOF T2D file: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export f...
Definition: cv.hpp:4913
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr para...
Definition: cv.hpp:5381
UO_coulomb
coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of...
Definition: cv.hpp:9953
MS_OMSSA_evalue
OMSSA:evalue: OMSSA E-value.
Definition: cv.hpp:4226
UNIMOD_Trp__His
Trp-&gt;His: Trp-&gt;His substitution.
Definition: cv.hpp:9032
MS_IsoProbe_T
IsoProbe T: Waters IsoProbe T MS.
Definition: cv.hpp:698
MS_database_source
database source: The organisation, project or laboratory from where the database is obtained (uniprot...
Definition: cv.hpp:3374
UNIMOD_Ser__Tyr
Ser-&gt;Tyr: Ser-&gt;Tyr substitution.
Definition: cv.hpp:7799
UNIMOD_Glutathione
Glutathione: Glutathione disulfide.
Definition: cv.hpp:6587
MS_travelling_wave_ion_mobility_mass_spectrometer
travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on ...
Definition: cv.hpp:5636
MS_image_current_detector
image current detector (inductive detector): Inductive detector.
Definition: cv.hpp:2381
MS_soft_ionization
soft ionization: The formation of gas-phase ions without extensive fragmentation. ...
Definition: cv.hpp:1622
UO_pascal_second
pascal second: A viscosity unit which is equal to one pascale per second.
Definition: cv.hpp:10064
UO_molar_mass_unit
molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing...
Definition: cv.hpp:9464
MS_prot_FDR_threshold
prot:FDR threshold: False-discovery rate threshold for proteins.
Definition: cv.hpp:4574
UNIMOD_Arg__GluSA
Arg-&gt;GluSA: Arginine oxidation to glutamic semialdehyde.
Definition: cv.hpp:7070
UO_cubic_meter_per_kilogram
cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by...
Definition: cv.hpp:9578
MS_source_temperature
source temperature: The temperature of the source of a mass spectrometer.
Definition: cv.hpp:6401
UNIMOD_NEMsulfur
NEMsulfur: N-ethylmaleimideSulfur.
Definition: cv.hpp:9263
UNIMOD_Label_13C_5_15N_1_
Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.
Definition: cv.hpp:6911
MS_non_standard_data_array
non-standard data array: A data array that contains data not covered by any other term in this group...
Definition: cv.hpp:2885
UNIMOD_dHex
dHex: Fucose.
Definition: cv.hpp:6974
MS_emPAI_value
emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.
Definition: cv.hpp:5963
MS_AP_MALDI
AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser de...
Definition: cv.hpp:971
MS_scan_start_time
scan start time: The time that an analyzer started a scan, relative to the start of the MS run...
Definition: cv.hpp:140
MS_ReAdW
ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML...
Definition: cv.hpp:2072
UNIMOD_Glu
Glu: Monoglutamyl.
Definition: cv.hpp:7331
UNIMOD_Diironsubcluster
Diironsubcluster: Hydrogenase diiron subcluster.
Definition: cv.hpp:7304
MS_cleavage_agent_name
cleavage agent name: The name of the cleavage agent.
Definition: cv.hpp:3461
UNIMOD_Octanoyl
Octanoyl: Octanoyl.
Definition: cv.hpp:7271
MS_nucleic_acid_base_modification
nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion)...
Definition: cv.hpp:6359
UNIMOD_Xle__Asp
Xle-&gt;Asp: Leu/Ile-&gt;Asp substitution.
Definition: cv.hpp:8729
UNIMOD_AHA_SS_CAM
AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.
Definition: cv.hpp:9098
UNIMOD_Asn__Ala
Asn-&gt;Ala: Asn-&gt;Ala substitution.
Definition: cv.hpp:8813
MS_ProteinScape_SearchEventId
ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database...
Definition: cv.hpp:4727
MS_MS1_label_based_raw_feature_quantitation
MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.
Definition: cv.hpp:6266
UNIMOD_DTT_C
DTT_C: Dithiothreitol (DTT) on Cys.
Definition: cv.hpp:7955
MS_hydrogen_deuterium_exchange
hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-for...
Definition: cv.hpp:1688
UNIMOD_Myristoyl_Delta_H_18_C_12_N_6_O_4_
Myristoyl+Delta:H(18)C(12)N(6)O(4): Myristic acid analogue.
Definition: cv.hpp:9278
MS_c_terminal_flanking_residue
c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it ...
Definition: cv.hpp:3638
MS_ProteinExtractor_MascotPeptideScoreThreshold
ProteinExtractor:MascotPeptideScoreThreshold:
Definition: cv.hpp:4526
UNIMOD_4_ONE
4-ONE: 4-Oxononenal (ONE).
Definition: cv.hpp:7919
MS_M_LDI_L
M L: Waters MALDI L MS.
Definition: cv.hpp:710
UNIMOD_Phosphoadenosine
Phosphoadenosine: AMP binding site.
Definition: cv.hpp:7214
MS_ProteomeDiscoverer_Spectrum_Exporter_File_name
ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported da...
Definition: cv.hpp:5354
MS_matrix_solution
matrix solution: Describes the chemical solution used as matrix.
Definition: cv.hpp:3038
UNIMOD_Propionyl_13C_3_
Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term &amp; K.
Definition: cv.hpp:6596
MS_ion_neutral_species_reaction
ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant t...
Definition: cv.hpp:1703
MS_target_list
target list: A list of peptides or compounds and their expected m/z coordinates that can be used to c...
Definition: cv.hpp:3302
MS_protein_identification_confidence_metric
protein identification confidence metric: Protein identification confidence metric (p-value...
Definition: cv.hpp:3869
MS_spectrum_descriptions
spectrum descriptions: Descriptions of the input spectra.
Definition: cv.hpp:4310
UNIMOD_EQAT_2H_5_
EQAT:2H(5): EAPTA d5.
Definition: cv.hpp:6839
UNIMOD_Succinyl_2H_4_
Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term &amp; K...
Definition: cv.hpp:6614
UNIMOD_TMAB_2H_9_
TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.
Definition: cv.hpp:7364
MS_temperature_array
temperature array: A data array of temperature measurements.
Definition: cv.hpp:3005
MS_electron_volt_OBSOLETE
electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing o...
Definition: cv.hpp:608
MS_microflex
microflex: Bruker Daltonics&#39; microflex: MALDI TOF.
Definition: cv.hpp:731
UNIMOD_Ala__Xle
Ala-&gt;Xle: Ala-&gt;Leu/Ile substitution.
Definition: cv.hpp:8492
UO_angle_unit
angle unit: A unit which is a standard measure of the figure or space formed by the junction of two l...
Definition: cv.hpp:9662
UO_illuminance_unit
illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area...
Definition: cv.hpp:9644
UNIMOD_Trp__Asp
Trp-&gt;Asp: Trp-&gt;Asp substitution.
Definition: cv.hpp:9023
MS_z_OBSOLETE
z (OBSOLETE charge number): OBSOLETE. The total charge on an ion divided by the electron charge e...
Definition: cv.hpp:851
MS_profile_spectrum
profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts p...
Definition: cv.hpp:557
MS_DSQ
DSQ: ThermoFinnigan DSQ GC-MS.
Definition: cv.hpp:2414
MS_Bioworks_SRF_file
Bioworks SRF file: Thermo Finnigan SRF file format.
Definition: cv.hpp:2735
UNIMOD_Arg__Ala
Arg-&gt;Ala: Arg-&gt;Ala substitution.
Definition: cv.hpp:8915
MS_Thermo_Fisher_Scientific_instrument_model
Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific.
Definition: cv.hpp:1889
UNIMOD_Thr__Met
Thr-&gt;Met: Thr-&gt;Met substitution.
Definition: cv.hpp:7829
UNIMOD_Met__Thr
Met-&gt;Thr: Met-&gt;Thr substitution.
Definition: cv.hpp:7673
UNIMOD_IGBP
IGBP: Light IDBEST tag for quantitation.
Definition: cv.hpp:6875
MS_Sequest_probability
Sequest:probability: The SEQUEST result &#39;Probability&#39;.
Definition: cv.hpp:3761
MS_ProteomeDiscoverer_Spectrum_Selector_SN_Threshold_FTonly
ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are...
Definition: cv.hpp:5507
UO_colony_forming_unit
colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers...
Definition: cv.hpp:9923
MS_quality_estimation_with_decoy_database
quality estimation with decoy database: Quality estimation by decoy database.
Definition: cv.hpp:3857
MS_field_free_region
field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields...
Definition: cv.hpp:872
UO_gram
gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
Definition: cv.hpp:9362
MS_MBMS
MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introdu...
Definition: cv.hpp:914
MS_diagnostic_ion
diagnostic ion: A product ion whose formation reveals structural or compositional information of its ...
Definition: cv.hpp:1493
UO_unit_of_molarity
unit of molarity: A concentration unit which is a standard measure of the number of moles of a given ...
Definition: cv.hpp:9482
MS_ADC
ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an el...
Definition: cv.hpp:518
MS_baseline_reduction
baseline reduction: A process of removal of varying intensities generated due to variable energy abso...
Definition: cv.hpp:2270
MS_progeny_ion
progeny ion: A charged product of a series of consecutive reactions that includes product ions...
Definition: cv.hpp:1442
MS_PyMS
PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to th...
Definition: cv.hpp:1184
MS_Mascot_score
Mascot:score: The Mascot result &#39;Score&#39;.
Definition: cv.hpp:3812
MS_MS
MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and t...
Definition: cv.hpp:1148
MS_precoated_MALDI_sample_plate
precoated MALDI sample plate: Precoated MALDI sample plate.
Definition: cv.hpp:3053
MS_MS1_label_based_protein_level_quantitation
MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.
Definition: cv.hpp:6272
MS_MaxQuant_feature_intensity
MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant. ...
Definition: cv.hpp:5957
MS_Thermo_Scientific_instrument_model
Thermo Scientific instrument model: Thermo Scientific instrument model.
Definition: cv.hpp:1922
MS_Q1_spectrum
Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage ...
Definition: cv.hpp:2195
MS_molecular_mass
molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules)...
Definition: cv.hpp:905
UNIMOD_DiLeu4plex115
DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.
Definition: cv.hpp:9251
UNIMOD_Nethylmaleimide
Nethylmaleimide: N-ethylmaleimide on cysteines.
Definition: cv.hpp:6653
std::string def
Definition: cv.hpp:10189
MS_Weierstrass_transform
Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a on...
Definition: cv.hpp:2870
MS_software
software: Software related to the recording or transformation of spectra.
Definition: cv.hpp:2039
UO_count_per_molar
count per molar: A rate unit which is equal to one over one molar.
Definition: cv.hpp:10148
UNIMOD_Pro__Trp
Pro-&gt;Trp: Pro-&gt;Trp substitution.
Definition: cv.hpp:8873
MS_positive_scan
positive scan: Polarity of the scan is positive.
Definition: cv.hpp:569
MS_Mascot_MaxProteinHits
Mascot:MaxProteinHits:
Definition: cv.hpp:4196
UNIMOD_Xle__Thr
Xle-&gt;Thr: Leu/Ile-&gt;Thr substitution.
Definition: cv.hpp:7616
UNIMOD_FTC
FTC: Fluorescein-5-thiosemicarbazide.
Definition: cv.hpp:7367
UNIMOD_Thrbiotinhydrazide
Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.
Definition: cv.hpp:7106
UNIMOD_HNE
HNE: 4-hydroxynonenal (HNE).
Definition: cv.hpp:6581
UO_temperature_unit
temperature unit: A unit which is a standard measure of the average kinetic energy of the particles i...
Definition: cv.hpp:9314
MS_LC_MS_feature_volume
LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.
Definition: cv.hpp:5771
MS_percolator_Q_value
percolator:Q value: Percolator:Q value.
Definition: cv.hpp:4712
UNIMOD_Methyl_2H_2_
Methyl:2H(2): Deuterium Methylation of Lysine.
Definition: cv.hpp:6944
UNIMOD_NIPCAM
NIPCAM: N-isopropylcarboxamidomethyl.
Definition: cv.hpp:6491
UNIMOD_LG_lactam_K
LG-lactam-K: Levuglandinyl - lysine lactam adduct.
Definition: cv.hpp:7400
MS_MALDI_Solutions
MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.
Definition: cv.hpp:4907
MS_param__v_ion
param: v ion:
Definition: cv.hpp:4037
MS_Glu_C
Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
Definition: cv.hpp:6005
UNIMOD_DimethylpyrroleAdduct
DimethylpyrroleAdduct: 2,5-dimethypyrrole.
Definition: cv.hpp:7019
MS_BioTOF
BioTOF: Bruker Daltonics&#39; BioTOF: ESI TOF.
Definition: cv.hpp:4850
UNIMOD_IMID
IMID: IMID d0.
Definition: cv.hpp:6635
MS_electric_field_strength
electric field strength: The magnitude of the force per unit charge at a given point in space...
Definition: cv.hpp:1325
MS_Pepitome_mzFidelity
Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks...
Definition: cv.hpp:5015
MS_Sequest_total_ions
Sequest:total ions: The SEQUEST result &#39;Total Ions&#39;.
Definition: cv.hpp:3785
MS_6340_Ion_Trap_LC_MS
6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1865
MS_ProteomeDiscoverer_Mascot_Weight_of_V_Ions
ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching...
Definition: cv.hpp:5489
UNIMOD_Sulfo
Sulfo: O-Sulfonation.
Definition: cv.hpp:6542
UO_colony_forming_unit_per_milliliter
colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers...
Definition: cv.hpp:9932
MS_ProteomeDiscoverer_Fragment_Mass_Tolerance_OBSOLETE
ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or ...
Definition: cv.hpp:5213
UNIMOD_TMAB
TMAB: 4-trimethyllammoniumbutyryl-.
Definition: cv.hpp:7361
MS_cyclotron_motion
cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field ...
Definition: cv.hpp:1316
UNIMOD_Label_13C_6_15N_4__Methyl
Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).
Definition: cv.hpp:8387
MS_MPI
MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons ...
Definition: cv.hpp:920
UNIMOD_Pro__Met
Pro-&gt;Met: Pro-&gt;Met substitution.
Definition: cv.hpp:8864
MS_ProteomeDiscoverer_WinCyg_source_files
ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.
Definition: cv.hpp:5471
MS_Sequest_sort_by_dM
Sequest:sort_by_dM:
Definition: cv.hpp:3467
MS_neutralization_reionization_mass_spectrometry
neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals b...
Definition: cv.hpp:1169
MS_vertical_ionization
vertical ionization: A process in which an electron is removed from or added to a molecule without a ...
Definition: cv.hpp:1637
MS_mass_limit
mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.
Definition: cv.hpp:1337
MS_MAT900XP
MAT900XP: ThermoFinnigan MAT900XP MS.
Definition: cv.hpp:719
UNIMOD_HexNAc_1_dHex_2_
HexNAc(1)dHex(2): HexNAc1dHex2.
Definition: cv.hpp:6740
MS_database_name
database name: The name of the search database (nr, SwissProt or est_human).
Definition: cv.hpp:3377
UNIMOD_Label_15N_3_
Label:15N(3): 15N(3).
Definition: cv.hpp:8366
UNIMOD_BMOE
BMOE: Addition of BMOE crosslinker.
Definition: cv.hpp:8060
MS_contact_fax_number
contact fax number: Fax number for the contact person or organization.
Definition: cv.hpp:5516
UNIMOD_Glu__Gln
Glu-&gt;Gln: Glu-&gt;Gln substitution.
Definition: cv.hpp:7547
UNIMOD_PropylNAGthiazoline
PropylNAGthiazoline: Propyl-1,2-dideoxy-2\&#39;-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\&#39;-thiazoline...
Definition: cv.hpp:7421
UO_mole
mole: A substance unit which is equal to the amount of substance of a molecular system which contains...
Definition: cv.hpp:9338
MS_mattauch_herzog_geometry
mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflectio...
Definition: cv.hpp:1286
MS_thomson
thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass ...
Definition: cv.hpp:224
UNIMOD_Cation_Zn_II_
Cation:Zn[II]: Replacement of 2 protons by zinc.
Definition: cv.hpp:8288
UNIMOD_Methylthio
Methylthio: Beta-methylthiolation.
Definition: cv.hpp:6539
UNIMOD_Met__Tyr
Met-&gt;Tyr: Met-&gt;Tyr substitution.
Definition: cv.hpp:8810
UNIMOD_HCysThiolactone
HCysThiolactone: N-Homocysteine thiolactone.
Definition: cv.hpp:9146
UNIMOD_Deamidated
Deamidated: Deamidation.
Definition: cv.hpp:6470
UNIMOD_Hex_2_HexNAc_2_dHex_1_
Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.
Definition: cv.hpp:6779
MS_Quattro_UItima
Quattro UItima: Waters Quattro Uitima MS.
Definition: cv.hpp:776
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Neutral_Loss_Peaks
ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss pea...
Definition: cv.hpp:5123
MS_Scaffold
Scaffold: Scaffold analysis software, see www.proteomesoftware.com.
Definition: cv.hpp:4916
UNIMOD_Acetyl_2H_3_
Acetyl:2H(3): Acetate labeling reagent (N-term &amp; K) (heavy form, +3amu).
Definition: cv.hpp:6590
MS_ProteinLynx_Ladder_Score
ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.
Definition: cv.hpp:4946
MS_SIM_spectrum
SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of ...
Definition: cv.hpp:2219
UNIMOD_Ala__Arg
Ala-&gt;Arg: Ala-&gt;Arg substitution.
Definition: cv.hpp:8507
MS_infusion
infusion: The continuous flow of solution of a sample into the ionization source. ...
Definition: cv.hpp:290
MS_nanoelectrospray
nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is sy...
Definition: cv.hpp:1604
UNIMOD_Lys__Val
Lys-&gt;Val: Lys-&gt;Val substitution.
Definition: cv.hpp:8765
MS_ELEMENT2
ELEMENT2: ThermoFinnigan ELEMENT2 MS.
Definition: cv.hpp:665
MS_reporter_ion_normalized_value
reporter ion normalized value: Normalized value of MS/MS reporter ion (e.g. iTraq).
Definition: cv.hpp:5819
MS_desorption_ionization_on_silicon
desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample de...
Definition: cv.hpp:1574
MS_fourier_transform_ion_cyclotron_resonance_mass_spectrometer
fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the princip...
Definition: cv.hpp:365
MS_Thermo_RAW_file
Thermo RAW file: Thermo Scientific RAW file format.
Definition: cv.hpp:2138
MS_Scaffold_Peptide_Probability
Scaffold:Peptide Probability: Scaffold peptide probability score.
Definition: cv.hpp:4937
MS_AE
AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a ...
Definition: cv.hpp:839
MS_4700_Proteomics_Analyzer
4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.
Definition: cv.hpp:620
MS_IMS
IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer ...
Definition: cv.hpp:1103
UNIMOD_Asp__Asn
Asp-&gt;Asn: Asp-&gt;Asn substitution.
Definition: cv.hpp:7529
UO_watt_per_meter_kelvin
watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin...
Definition: cv.hpp:10088
UO_katal
katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second...
Definition: cv.hpp:9659
MS_surface_enhanced_neat_desorption
surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is ...
Definition: cv.hpp:1211
MS_dataset_submitter
dataset submitter: A person who submits a dataset to a repository.
Definition: cv.hpp:6386
UNIMOD_Trp__Arg
Trp-&gt;Arg: Trp-&gt;Arg substitution.
Definition: cv.hpp:7865
MS_ion_optics
ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise man...
Definition: cv.hpp:1820
MS_no_nativeID_format
no nativeID format: No nativeID format indicates that the file tagged with this term does not contain...
Definition: cv.hpp:3011
MS_electron_multiplier
electron multiplier: A device to amplify the current of a beam or packet of charged particles or phot...
Definition: cv.hpp:1052
MS_Phenyx_Turbo_ErrorTol
Phenyx:Turbo:ErrorTol:
Definition: cv.hpp:4382
MS_MALDI_LTQ_Orbitrap
MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.
Definition: cv.hpp:2441
UNIMOD_Ethoxyformyl
Ethoxyformyl: Ethoxyformylation.
Definition: cv.hpp:8210
MS_chromatogram_attribute
chromatogram attribute: Chromatogram properties that are associated with a value. ...
Definition: cv.hpp:2960
MS_MapNormalizer
MapNormalizer: Normalizes peak intensities in an MS run.
Definition: cv.hpp:2792
MS_protein_value__sum_of_peptide_values
protein value: sum of peptide values: Protein quantification value calculated as sum of peptide value...
Definition: cv.hpp:5801
MS_high_energy_collision
high energy collision: Collision-induced dissociation process wherein the projectile ion has laborato...
Definition: cv.hpp:1676
UNIMOD_Thioacyl
Thioacyl: 3-sulfanylpropanoyl.
Definition: cv.hpp:6692
MS_mass_table_options
mass table options: Root node for options for the mass table used.
Definition: cv.hpp:4304
MS_declustering_potential
declustering potential: Potential difference between the orifice and the skimmer in volts...
Definition: cv.hpp:3167
MS_sequence_subsumable_protein
sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are di...
Definition: cv.hpp:5042
UO_information_unit
information unit: A unit which is a standard measure of the amount of information.
Definition: cv.hpp:9986
MS_Mascot_PreferredTaxonomy
Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same s...
Definition: cv.hpp:5627
MS_DLI
DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray ...
Definition: cv.hpp:1031
MS_generic_experimental_condition
generic experimental condition: The experimental condition is given in the value of this term...
Definition: cv.hpp:5690
MS_mass_unit_OBSOLETE
mass unit: A unit of measurement for mass.
Definition: cv.hpp:1829
MS_quality_estimation_method_details
quality estimation method details: Method for quality estimation (manually or with decoy database)...
Definition: cv.hpp:3503
MS_ProteomeDiscoverer_Max_Precursor_Mass
ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion...
Definition: cv.hpp:5069
UNIMOD_Delta_H_8_C_6_O_1_
Delta:H(8)C(6)O(1): Reduced acrolein addition +96.
Definition: cv.hpp:9236
MS_Sequest_Chromatogram
Sequest:Chromatogram:
Definition: cv.hpp:3605
MS_Resampler
Resampler: Transforms an LC/MS map into a resampled map or a png image.
Definition: cv.hpp:2801
MS_ABI
ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.
Definition: cv.hpp:1928
MS_fragment_neutral_loss
fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion...
Definition: cv.hpp:4811
MS_scan_window_upper_limit
scan window upper limit: The lower m/z bound of a mass spectrometer scan window.
Definition: cv.hpp:1946
MS_CID
CID (collision-induced dissociation): The dissociation of an ion after collisional excitation...
Definition: cv.hpp:581
MS_Sequest_sort_by_MH_
Sequest:sort_by_MH+:
Definition: cv.hpp:3473
UNIMOD_Xlink_B10621
Xlink:B10621: Bis-N-I-sulfonerahodamine.
Definition: cv.hpp:7031
UO_square_centimeter
square centimeter: An area unit which is equal to one thousand of square meter or 10^[-3] m^[2]...
Definition: cv.hpp:9542
UO_irradiance_unit
irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a su...
Definition: cv.hpp:9755
MS_peak_intensity_rank
peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc.
Definition: cv.hpp:3263
Information about an ontology or CV source and a short &#39;lookup&#39; tag to refer to.
Definition: cv.hpp:10156
MS_wavelength
wavelength: The distance between two peaks of the emitted laser beam.
Definition: cv.hpp:3065
UNIMOD_Thr__Cys
Thr-&gt;Cys: Thr-&gt;Cys substitution.
Definition: cv.hpp:8957
MS_moving_wire
moving wire: Continuous moving surface in the form of a wire which passes through an ionsource carryi...
Definition: cv.hpp:302
MS_TIC_chromatogram
TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion cu...
Definition: cv.hpp:950
UNIMOD_Asp__Trp
Asp-&gt;Trp: Asp-&gt;Trp substitution.
Definition: cv.hpp:8582
UNIMOD_Glu__Tyr
Glu-&gt;Tyr: Glu-&gt;Tyr substitution.
Definition: cv.hpp:8618
MS_IdentityE_XML
IdentityE XML: Source file for this mzIdentML was in Waters IdentityE XML format. ...
Definition: cv.hpp:4928
UNIMOD_iodoTMT6plex
iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.
Definition: cv.hpp:9287
UNIMOD_Label_15N_2_2H_9_
Label:15N(2)2H(9): SILAC label.
Definition: cv.hpp:8261
MS_alternate_mass
alternate mass: List of masses a non-standard letter code is replaced with.
Definition: cv.hpp:4325
MS_de_novo_search
de novo search: A de novo sequencing search (without database).
Definition: cv.hpp:3368
UO_volume_percentage
volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL pe...
Definition: cv.hpp:9788
MS_collision_induced_dissociation
collision-induced dissociation: The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
Definition: cv.hpp:578
UNIMOD_SecNEM_2H_5_
SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.
Definition: cv.hpp:8456
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Activation_Type_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmen...
Definition: cv.hpp:5096
UNIMOD_Met__Val
Met-&gt;Val: Met-&gt;Val substitution.
Definition: cv.hpp:7685
UO_radian
radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc ...
Definition: cv.hpp:9668
UNIMOD_Arg__Ser
Arg-&gt;Ser: Arg-&gt;Ser substitution.
Definition: cv.hpp:7748
MS_TrypChymo
TrypChymo:
Definition: cv.hpp:4181
MS_ion_optics_type
ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectromete...
Definition: cv.hpp:2285
MS_ProteomeDiscoverer_Search_Against_Decoy_Database_OBSOLETE
ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer applicat...
Definition: cv.hpp:5294
UNIMOD_Ethyl
Ethyl: Ethylation.
Definition: cv.hpp:6938
MS_atmospheric_pressure_photoionization
atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ...
Definition: cv.hpp:1559
MS_ProteinExtractor_Score
ProteinExtractor:Score: The score calculated by ProteinExtractor.
Definition: cv.hpp:4760
UNIMOD_Thiophos_S_S_biotin
Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.
Definition: cv.hpp:7049
MS_PolyTools
PolyTools: Bruker PolyTools software.
Definition: cv.hpp:2690
MS_light_labeled_peptide
light labeled peptide (unlabeled peptide): A peptide that has not been labeled with heavier-than-usua...
Definition: cv.hpp:3221
MS_LTQ_Orbitrap
LTQ Orbitrap: Finnigan LTQ Orbitrap MS.
Definition: cv.hpp:1772
UNIMOD_ICAT_C_13C_9_
ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.
Definition: cv.hpp:6647
UNIMOD_Deoxy
Deoxy: Reduction.
Definition: cv.hpp:7322
MS_Mascot_SigThresholdType
Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either &#39;identity&#39; or &#39;...
Definition: cv.hpp:5522
MS_minimum_number_of_enzymatic_termini
minimum number of enzymatic termini: Minimum number of enzymatic termini a pepide must have to be acc...
Definition: cv.hpp:4967
MS_taxonomy__common_name
taxonomy: common name: This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
Definition: cv.hpp:4634
UNIMOD_iTRAQ4plex115
iTRAQ4plex115: Accurate mass for 115.
Definition: cv.hpp:7463
MS_SpectraST_delta
SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up...
Definition: cv.hpp:4493
UNIMOD_Val__Asn
Val-&gt;Asn: Val-&gt;Asn substitution.
Definition: cv.hpp:8996
MS_faraday_cup
faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically ...
Definition: cv.hpp:494
MS_Sequest_sort_by_XCorr
Sequest:sort_by_XCorr:
Definition: cv.hpp:3557
MS_contact_toll_free_phone_number
contact toll-free phone number: Toll-free phone number of the contact person or organization.
Definition: cv.hpp:5519
UNIMOD_UgiJoullieProGlyProGly
UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid...
Definition: cv.hpp:9170
MS_Sequest_NormalizeXCorrValues
Sequest:NormalizeXCorrValues:
Definition: cv.hpp:3416
UNIMOD_trifluoro
trifluoro: Trifluoroleucine replacement of leucine.
Definition: cv.hpp:7991
MS______FYWL_____P_
(?&lt;=[FYWL])(?!P):
Definition: cv.hpp:4238
UNIMOD_Phe__Ser
Phe-&gt;Ser: Phe-&gt;Ser substitution.
Definition: cv.hpp:7562
MS_frag__x_ion___H2O
frag: x ion - H2O: Fragmentation information, type of product: x ion without water.
Definition: cv.hpp:4796
MS_MS1_label_based_peptide_level_quantitation
MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.
Definition: cv.hpp:6269
UNIMOD_Asp__Cys
Asp-&gt;Cys: Asp-&gt;Cys substitution.
Definition: cv.hpp:8552
UO_parts_per_million
parts per million: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:9800
MS_ProteinScape_second_round_Phenyx
ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.
Definition: cv.hpp:6149
MS_SRM_chromatogram
SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an arr...
Definition: cv.hpp:4655
UNIMOD_Withaferin
Withaferin: Modification of cystein by withaferin.
Definition: cv.hpp:8462
UNIMOD_Biotin_Thermo_88317
Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.
Definition: cv.hpp:8465
MS_Linked_Scan_at_Constant_B2_E
Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates...
Definition: cv.hpp:1406
MS_LD_OBSOLETE
LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or wi...
Definition: cv.hpp:1136
UNIMOD_OxArgBiotin
OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:6668
UNIMOD_Xlink_EGScleaved
Xlink:EGScleaved: EGS crosslinker to Lys or N-terminus following hydroxylamine cleavage.
Definition: cv.hpp:8444
UNIMOD_pyrophospho
pyrophospho: Pyrophosphorylation of Ser/Thr.
Definition: cv.hpp:8168
MS_QSTAR
QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.
Definition: cv.hpp:770
UNIMOD_Hydroxymethyl
Hydroxymethyl: Hydroxymethyl.
Definition: cv.hpp:7238
MS_Waters_software
Waters software: Waters software for data acquisition and analysis.
Definition: cv.hpp:2591
MS_B
B (magnetic field strength): A property of space that produces a force on a charged particle equal to...
Definition: cv.hpp:170
MS_Sequest_PeptideRankSp
Sequest:PeptideRankSp: The SEQUEST result &#39;Sp&#39; of &#39;Rank/Sp&#39; in out file (peptide). Also called &#39;rsp&#39;.
Definition: cv.hpp:3917
UNIMOD_Asp__Ala
Asp-&gt;Ala: Asp-&gt;Ala substitution.
Definition: cv.hpp:7523
MS_Thermo_Finnigan_software
Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.
Definition: cv.hpp:2588
MS_Xevo_G2_Q_Tof
Xevo G2 Q-Tof: Waters oa-ToF based.
Definition: cv.hpp:5597
UNIMOD_Lys__Asp
Lys-&gt;Asp: Lys-&gt;Asp substitution.
Definition: cv.hpp:8747
MS_Paragon_contrib
Paragon:contrib: The Paragon result &#39;Contrib&#39;.
Definition: cv.hpp:3809
MS_Phenyx_Auto
Phenyx:Auto:
Definition: cv.hpp:4421
MS_peptide_shared_in_multiple_proteins
peptide shared in multiple proteins:
Definition: cv.hpp:3824
UNIMOD_Nitro
Nitro: Oxidation to nitro.
Definition: cv.hpp:7094
MS_MaxQuant_peptide_counts__unique_
MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant...
Definition: cv.hpp:5939
MS_maldi_spot_identifier
maldi spot identifier: Maldi Spot Identifier.
Definition: cv.hpp:2105
MS_Th
Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an...
Definition: cv.hpp:221
MS_ProteomeDiscoverer_Spectrum_Files_Raw_File_names_OBSOLETE
ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files...
Definition: cv.hpp:5051
MS_Profound_Cluster
Profound:Cluster: The Profound cluster score.
Definition: cv.hpp:4736
UO_amount_per_container
amount per container: A concentration unit which is a standard measure of the amount of a substance i...
Definition: cv.hpp:10121
MS_text_file
text file: Simple text file of "m/z [intensity]" values for a PMF (or single MS-MS) search...
Definition: cv.hpp:4349
UO_radian_per_second_per_second
radian per second per second: An angular unit acceleration which is equal to the angular acceleration...
Definition: cv.hpp:9533
UNIMOD_Tyr__Ser
Tyr-&gt;Ser: Tyr-&gt;Ser substitution.
Definition: cv.hpp:7877
UO_weber
weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn ...
Definition: cv.hpp:9971
MS_selection_window_attribute
selection window attribute: Selection window properties that are associated with a value...
Definition: cv.hpp:2096
UNIMOD_AROD
AROD: Cysteine modifier.
Definition: cv.hpp:8243
MS_SNAP
SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured s...
Definition: cv.hpp:6257
MS_selected_ion_flow_tube
selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and...
Definition: cv.hpp:1223
UNIMOD_Tyr__Lys
Tyr-&gt;Lys: Tyr-&gt;Lys substitution.
Definition: cv.hpp:9068
MS_SQID_deltaScore
SQID:deltaScore: The SQID result &#39;deltaScore&#39;.
Definition: cv.hpp:5912
MS_ProteomeDiscoverer_Maximum_Missed_Cleavage_Sites
ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider...
Definition: cv.hpp:5219
MS_param__y_ion
param: y ion:
Definition: cv.hpp:4052
MS_MS2_tag_based_analysis
MS2 tag-based analysis: MS2 tag-based analysis.
Definition: cv.hpp:6344
MS_Constant_Neutral_Mass_Gain_Scan
Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that und...
Definition: cv.hpp:1376
MS_X_Tandem_hyperscore
X!Tandem:hyperscore: The X!Tandem hyperscore.
Definition: cv.hpp:4235
MS_m_z_Separation_Method
m/z Separation Method: m/z Separation Method.
Definition: cv.hpp:1754
MS_q
q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so a...
Definition: cv.hpp:1190
MS_database_filtering
database filtering: Was there filtering used on the database.
Definition: cv.hpp:3395
MS_negative_ion
negative ion: An atomic or molecular species having a net negative electric charge.
Definition: cv.hpp:1523
UNIMOD_O_Methylphosphate
O-Methylphosphate: O-Methylphosphorylation.
Definition: cv.hpp:7925
MS_MapAligner
MapAligner: Corrects retention time distortions between maps.
Definition: cv.hpp:2789
MS_Digital_Object_Identifier__DOI_
Digital Object Identifier (DOI): DOI unique identifier.
Definition: cv.hpp:6017
MS_Asp_N_ambic
Asp-N_ambic:
Definition: cv.hpp:4160
MS_CNBr
CNBr: Cyanogen bromide.
Definition: cv.hpp:4166
UNIMOD_MolybdopterinGD_Delta_S__1_Se_1_
MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide...
Definition: cv.hpp:7241
MS_SpectrumMill_Score
SpectrumMill:Score: Spectrum mill peptide score.
Definition: cv.hpp:4949
UNIMOD_Deoxyhypusine
Deoxyhypusine: Deoxyhypusine.
Definition: cv.hpp:8474
UNIMOD_Xlink_DMP_s
Xlink:DMP-s: One end of crosslink attached, one end free.
Definition: cv.hpp:7346
UO_decibel
decibel: An ratio unit which is an indicator of sound power per unit area.
Definition: cv.hpp:10070
UNIMOD_Pro__Asn
Pro-&gt;Asn: Pro-&gt;Asn substitution.
Definition: cv.hpp:8867
UNIMOD_Asn__Cys
Asn-&gt;Cys: Asn-&gt;Cys substitution.
Definition: cv.hpp:8816
MS_analyzer_type
analyzer type: The common name of the particular analyzer stage being described. Synonym of mass anal...
Definition: cv.hpp:122
MS_mass_trace_reporting__polygons
mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygon...
Definition: cv.hpp:5729
MS_ProteinProspector
ProteinProspector: ProteinProspector software for data acquisition and analysis.
Definition: cv.hpp:6407
UNIMOD_Asp__Xle
Asp-&gt;Xle: Asp-&gt;Leu/Ile substitution.
Definition: cv.hpp:8558
MS_LTQ_Orbitrap_XL_ETD
LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.
Definition: cv.hpp:2429
MS_ProteomeDiscoverer_Spectrum_Selector_Use_New_Precursor_Reevaluation
ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor r...
Definition: cv.hpp:5504
UNIMOD_OxLysBiotinRed
OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.
Definition: cv.hpp:6656
UO_count_per_nanomolar_second
count per nanomolar second: A rate unit which is equal to one over one nanomolar second.
Definition: cv.hpp:10136
UNIMOD_Pro__Asp
Pro-&gt;Asp: Pro-&gt;Asp substitution.
Definition: cv.hpp:8849
MS_transition_validation_method
transition validation method: The strategy used to validate that a transition is effective.
Definition: cv.hpp:3275
MS_cone_voltage
cone voltage: Potential difference between the sampling cone/orifice in volts.
Definition: cv.hpp:3170
UNIMOD_Asp__Phe
Asp-&gt;Phe: Asp-&gt;Phe substitution.
Definition: cv.hpp:8555
UNIMOD_maleimide3
maleimide3: Maleimide-3-saccharide.
Definition: cv.hpp:8315
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5405
UO_micron_pixel
micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.
Definition: cv.hpp:10016
UNIMOD_Methyl_Acetyl_2H_3_
Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.
Definition: cv.hpp:8015
MS_quick_and_dirty_MALDI_sample_preparation
quick and dirty MALDI sample preparation: Quick &amp; dirty (Q&amp;D) sample preparation separating matrix ha...
Definition: cv.hpp:6239
MS_ProteomeDiscoverer_SRF_File_Selector_SRF_File_Path_OBSOLETE
ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (Sequest Result Format)...
Definition: cv.hpp:5054
UNIMOD_Trp__Oxolactone
Trp-&gt;Oxolactone: Tryptophan oxidation to oxolactone.
Definition: cv.hpp:6953
MS_H_Score
H-Score: H-Score for peptide phosphorylation site location.
Definition: cv.hpp:6218
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5402
MS_MSQuant_PTM_score
MSQuant:PTM-score: The PTM score from MSQuant software.
Definition: cv.hpp:6194
MS_distinct_peptide_sequences
distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a mi...
Definition: cv.hpp:3590
MS_BSI_software
BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.
Definition: cv.hpp:6101
MS_MS1_label_based_proteingroup_level_quantitation
MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation...
Definition: cv.hpp:6275
MS_dimeric_ion
dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral ...
Definition: cv.hpp:1496
MS_ECD
ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts wit...
Definition: cv.hpp:1037
MS_sandwich_MALDI_sample_preparation
sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.
Definition: cv.hpp:6233
UNIMOD_maleimide
maleimide: Maleimide.
Definition: cv.hpp:8024
MS_ProteomeDiscoverer_Xtract_Lowest_MZ_OBSOLETE
ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measu...
Definition: cv.hpp:5156
MS_ProteinExtractor_MascotWeighting
ProteinExtractor:MascotWeighting:
Definition: cv.hpp:4535
UNIMOD_Asn__His
Asn-&gt;His: Asn-&gt;His substitution.
Definition: cv.hpp:7700
UNIMOD_ADP_Ribosyl
ADP-Ribosyl: ADP Ribose addition.
Definition: cv.hpp:6869
MS_Synapt_MS
Synapt MS: Waters oa-ToF based.
Definition: cv.hpp:5594
MS_Bruker_software
Bruker software: Bruker software for data acquisition and analysis.
Definition: cv.hpp:2585
UNIMOD_His__Xle
His-&gt;Xle: His-&gt;Leu/Ile substitution.
Definition: cv.hpp:7613
UNIMOD_Nmethylmaleimide_water
Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.
Definition: cv.hpp:7394
MS_charge_exchange_ionization
charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on...
Definition: cv.hpp:1568
PWIZ_API_DECL const std::vector< CVID > & cvids()
returns vector of all valid CVIDs
MS_spectrum_identification_result_details
spectrum identification result details: This subsection describes terms which can describe details of...
Definition: cv.hpp:4448
MS_collisional_excitation
collisional excitation: The reaction of an ion with a neutral species in which the translational ener...
Definition: cv.hpp:1667
MS_final_MS_exponent
final MS exponent: Final MS level achieved when performing PFF with the ion trap (e.g. MS E10).
Definition: cv.hpp:164
MS_Shimadzu_Biotech_database_entity
Shimadzu Biotech database entity: Shimadzu Biotech format.
Definition: cv.hpp:3338
MS_accuracy
accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.
Definition: cv.hpp:134
UO_surface_tension_unit
surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of ...
Definition: cv.hpp:10052
MS_apexControl
apexControl: Bruker software for data acquisition.
Definition: cv.hpp:2627
UNIMOD_OxProBiotinRed
OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.
Definition: cv.hpp:6662
UNIMOD_ICPL_13C_6_2H_4_
ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form...
Definition: cv.hpp:8117
UO_milliliter_per_cubic_meter
milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter ...
Definition: cv.hpp:9911
MS_HCTcontrol
HCTcontrol: Bruker software for data acquisition.
Definition: cv.hpp:2684
MS_protein_result_details
protein result details: Protein level information.
Definition: cv.hpp:3554
UNIMOD_Label_13C_6_15N_4__Dimethyl
Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).
Definition: cv.hpp:8390
MS_ions_series_considered
ions series considered: The ion series that were used during the calculation of the count (e...
Definition: cv.hpp:3665
UO_heat_conduction_unit
heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of t...
Definition: cv.hpp:10082
UNIMOD_HCysteinyl
HCysteinyl: S-homocysteinylation.
Definition: cv.hpp:9149
MS_quattro_micro
quattro micro: Waters Quattro micro MS.
Definition: cv.hpp:773
MS_Sequest_PeptideSp
Sequest:PeptideSp: The SEQUEST result &#39;Sp&#39; in out file (peptide).
Definition: cv.hpp:3914
MS_calibration_spectrum
calibration spectrum: A spectrum derived from a special calibration source, rather than from the prim...
Definition: cv.hpp:3332
MS_GD_MS
GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at t...
Definition: cv.hpp:1091
MS_frag__y_ion
frag: y ion: Fragmentation information, type of product: y ion.
Definition: cv.hpp:3926
MS_surface_induced_dissociation
surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface...
Definition: cv.hpp:602
MS_chemical_compound
chemical compound: A substance formed by chemical union of two or more elements or ingredients in def...
Definition: cv.hpp:3185
MS_decoy_DB_type_reverse
decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order...
Definition: cv.hpp:3860
MS_aromatic_ion
aromatic ion: A planar cyclic ion that obeys the Hckel (4n + 2) rule where n is a positive integer re...
Definition: cv.hpp:1475
MS_ProteomeDiscoverer_Spectrum_Grouper_Max_RT_Difference_OBSOLETE
ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be ...
Definition: cv.hpp:5141
UO_milligram_per_milliliter
milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divid...
Definition: cv.hpp:9821
MS_ProteomeDiscoverer_Source_Files_OBSOLETE
ProteomeDiscoverer:Source Files: Input pepXML files.
Definition: cv.hpp:5462
MS_excludes_supersede_includes
excludes supersede includes: A priority setting specifying that excluded targets have priority over t...
Definition: cv.hpp:3311
UO_angular_velocity_unit
angular velocity unit: A unit which is a standard measure of the rate of angular movement about an ax...
Definition: cv.hpp:9446
MS_quantile_normalization__peptides
quantile normalization, peptides: Normalization of peptide values to approach the same distribution...
Definition: cv.hpp:5840
MS_predicted_isoelectric_point
predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an...
Definition: cv.hpp:3128
MS_LTQ_FT_Ultra
LTQ FT Ultra: LTQ FT Ultra.
Definition: cv.hpp:2120
UNIMOD_Cation_Cu_I_
Cation:Cu[I]: Replacement of proton by copper.
Definition: cv.hpp:7457
UNIMOD_Asp__Gly
Asp-&gt;Gly: Asp-&gt;Gly substitution.
Definition: cv.hpp:7532
UNIMOD_Val__Cys
Val-&gt;Cys: Val-&gt;Cys substitution.
Definition: cv.hpp:8987
UNIMOD_Ala__Phe
Ala-&gt;Phe: Ala-&gt;Phe substitution.
Definition: cv.hpp:8486
MS_curator_keyword
curator keyword: Keyword assigned by a data curator.
Definition: cv.hpp:6029
MS_Phenyx_User
Phenyx:User:
Definition: cv.hpp:4424
UNIMOD_Myristoyl_Delta_H__4_
Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.
Definition: cv.hpp:6713
MS_time_lag_focusing
time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by intr...
Definition: cv.hpp:1253
UO_activity__of_a_radionuclide__unit
activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disinteg...
Definition: cv.hpp:9680
MS_Sequest_LimitTo
Sequest:LimitTo: Specify "number of dtas shown" as value of the CVParam!
Definition: cv.hpp:3455
MS_scan
scan: Function or process of the mass spectrometer where it records a spectrum.
Definition: cv.hpp:1745
MS_plasma_desorption_ionization
plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ioni...
Definition: cv.hpp:1613
MS_Mascot_C13_counts
Mascot:C13 counts: C13 peaks to use in peak detection.
Definition: cv.hpp:6140
UNIMOD_Cys__Oxoalanine
Cys-&gt;Oxoalanine: Oxoalanine.
Definition: cv.hpp:7208
MS_Citius_HRT
Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.
Definition: cv.hpp:5654
UNIMOD_ICAT_D_2H_8_
ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.
Definition: cv.hpp:6485
UNIMOD_Maleimide_PEO2_Biotin
Maleimide-PEO2-Biotin: Maleimide-Biotin.
Definition: cv.hpp:7436
MS_ESA
ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
Definition: cv.hpp:1061
UNIMOD_SulfurDioxide
SulfurDioxide: SulfurDioxide.
Definition: cv.hpp:9266
MS_Micromass_PKL_file
Micromass PKL file: Micromass PKL file format.
Definition: cv.hpp:2144
MS_FAIMS_compensation_voltage
FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compens...
Definition: cv.hpp:4976
MS_Progeny_Fragment_Ion
Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that inclu...
Definition: cv.hpp:1445
MS_Xevo_TQ_MS
Xevo TQ MS: Waters quadrupole based.
Definition: cv.hpp:5618
UO_molar_volume_unit
molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance contai...
Definition: cv.hpp:9467
MS_Mascot_ShowDecoyMatches
Mascot:ShowDecoyMatches:
Definition: cv.hpp:4220
MS_nativeID_format
nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers ar...
Definition: cv.hpp:2813
MS_emulsion
emulsion: State if the sample is in emulsion form.
Definition: cv.hpp:248
UNIMOD_Label_13C_6_15N_2__Acetyl
Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.
Definition: cv.hpp:8078
UNIMOD_SMA
SMA: N-Succinimidyl-2-morpholine acetate.
Definition: cv.hpp:6518
UNIMOD_Amidated
Amidated: Amidation.
Definition: cv.hpp:6455
MS_6410_Triple_Quad_LC_MS
6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent ...
Definition: cv.hpp:1871
UO_acceleration_unit
acceleration unit: A unit which is a standard measure of the rate of change of velocity in either spe...
Definition: cv.hpp:9443
MS_APPI_OBSOLETE
APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the r...
Definition: cv.hpp:983
MS_TagRecon
TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.
Definition: cv.hpp:4997
UNIMOD_Cys__His
Cys-&gt;His: Cys-&gt;His substitution.
Definition: cv.hpp:8525
UO_tesla
tesla: A magnetic flux density unit which is equal to one weber per square meter. ...
Definition: cv.hpp:9977
MS_peptide_raw_area
peptide raw area: Peptide raw area.
Definition: cv.hpp:3689
UNIMOD_Cys__PyruvicAcid
Cys-&gt;PyruvicAcid: Pyruvic acid from N-term cys.
Definition: cv.hpp:7160
MS_Collision_cell_exit_potential
Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrume...
Definition: cv.hpp:6083
MS_spectral_library_search
spectral library search: A search using a library of spectra.
Definition: cv.hpp:3431
MS_Phenyx_PepPvalue
Phenyx:PepPvalue:
Definition: cv.hpp:4430
UNIMOD_Asn__Pro
Asn-&gt;Pro: Asn-&gt;Pro substitution.
Definition: cv.hpp:8831
UNIMOD_Lys__Met
Lys-&gt;Met: Lys-&gt;Met substitution.
Definition: cv.hpp:7637
MS_ionization_efficiency
ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
Definition: cv.hpp:1589
MS_SILAC_quantitation_analysis
SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).
Definition: cv.hpp:5753
MS_SRM_transition_ID
SRM transition ID: SRM transition ID.
Definition: cv.hpp:5735
MS_ProteomeDiscoverer_SEQUEST_Weight_of_c_Ions
ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5318
UNIMOD_Label_13C_6__GlyGly
Label:13C(6)+GlyGly: 13C6 labeled ubiquitinylation residue.
Definition: cv.hpp:8042
MS_experimental_condition__disease_
experimental condition &#39;disease&#39;: The experimental condition is &#39;disease&#39; in contrast to &#39;healthy&#39;...
Definition: cv.hpp:5684
UNIMOD_Met__Gly
Met-&gt;Gly: Met-&gt;Gly substitution.
Definition: cv.hpp:8789
MS_product_ion_spectrum
product ion spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments designed to record p...
Definition: cv.hpp:2213
MS_add_others_OBSOLETE
add_others:
Definition: cv.hpp:4223
UNIMOD_GIST_Quat_2H_3_
GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term &amp; K.
Definition: cv.hpp:6602
UO_pH
pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activi...
Definition: cv.hpp:9881
MS_peptide_result_details
peptide result details: Peptide level information.
Definition: cv.hpp:3614
MS_Q_Tof_Premier
Q-Tof Premier: Waters Q-Tof Premier MS.
Definition: cv.hpp:2408
UNIMOD_Glu__Thr
Glu-&gt;Thr: Glu-&gt;Thr substitution.
Definition: cv.hpp:8612
MS_MS_GF_Energy
MS-GF:Energy: MS-GF energy score.
Definition: cv.hpp:6431
MS_infrared_multiphoton_dissociation
infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a res...
Definition: cv.hpp:1106
MS_decoy_DB_type_randomized
decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the or...
Definition: cv.hpp:3863
MS_SELDI
SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas pha...
Definition: cv.hpp:1208
MS_V8_E
V8-E:
Definition: cv.hpp:4190
UNIMOD_Trp__Pro
Trp-&gt;Pro: Trp-&gt;Pro substitution.
Definition: cv.hpp:9044
MS_AAIndex_mass_table
AAIndex mass table: The masses used in the mass table are taken from AAIndex.
Definition: cv.hpp:4280
MS_unified_atomic_mass_unit_OBSOLETE
unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground sta...
Definition: cv.hpp:956
UNIMOD_Dehydrated
Dehydrated: Dehydration.
Definition: cv.hpp:6500
MS_mass_selective_axial_ejection
mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z va...
Definition: cv.hpp:1343
MS_search_tolerance_minus_value
search tolerance minus value:
Definition: cv.hpp:4472
MS_u_OBSOLETE
u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground...
Definition: cv.hpp:959
UNIMOD_Met__Asp
Met-&gt;Asp: Met-&gt;Asp substitution.
Definition: cv.hpp:8780
MS_nanoACQUITY_UPLC_System_with_Technology
nanoACQUITY UPLC System with Technology: Waters LC-system.
Definition: cv.hpp:5549
MS_dwell_time
dwell time: The time spent gathering data across a peak.
Definition: cv.hpp:1952
MS_jet_separator
jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of dif...
Definition: cv.hpp:293
UNIMOD_Xle__Asn
Xle-&gt;Asn: Leu/Ile-&gt;Asn substitution.
Definition: cv.hpp:7619
MS_Genespring_MS
Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data...
Definition: cv.hpp:2561
UNIMOD_Xlink_DTSSP
Xlink:DTSSP: Monolink of DSP/DTSSP crosslinker to Lys or N-terminus.
Definition: cv.hpp:8435
MS_protein_name
protein name: A long name describing the function of the protein.
Definition: cv.hpp:3200
MS_high_field_asymmetric_waveform_ion_mobility_spectrometry
high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentr...
Definition: cv.hpp:1070
MS_Sequest_matched_ions
Sequest:matched ions: The SEQUEST result &#39;Matched Ions&#39;.
Definition: cv.hpp:3782
structure for holding CV term info
Definition: cv.hpp:10184
UNIMOD_maleimide5
maleimide5: Maleimide-5-saccharide.
Definition: cv.hpp:8318
MS_decoy_DB_from_nr
decoy DB from nr:
Definition: cv.hpp:4115
MS_Sequest_sort_by_Ions
Sequest:sort_by_Ions:
Definition: cv.hpp:3470
MS_ProteomeDiscoverer_SEQUEST_Max_Identical_Modifications_Per_Peptide
ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modif...
Definition: cv.hpp:5264
MS_detector_resolution
detector resolution: The resolving power of the detector to detect the smallest difference between tw...
Definition: cv.hpp:179
MS_LCQ_Deca
LCQ Deca: ThermoFinnigan LCQ Deca.
Definition: cv.hpp:2111
MS_scan_attribute
scan attribute: Scan properties that are associated with a value.
Definition: cv.hpp:1955
MS_frag__z_ion
frag: z ion: Fragmentation information, type of product: z ion.
Definition: cv.hpp:3962
MS_Ascore
Ascore: Ascore software.
Definition: cv.hpp:6212
MS_MALDI_Synapt_G2_S_HDMS
MALDI Synapt G2-S HDMS: Waters oa-ToF based.
Definition: cv.hpp:5567
MS_decoy_DB_details
decoy DB details: Details of decoy generation and database structure.
Definition: cv.hpp:4583
MS_TripleTOF_5600
TripleTOF 5600: AB SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer...
Definition: cv.hpp:3344
UNIMOD_Label_2H_10_
Label:2H(10): 2H(10) label.
Definition: cv.hpp:9206
MS_dpControl
dpControl: Bruker software for data acquisition.
Definition: cv.hpp:2669
MS_AXIMA_Performance_MALDI_TOF_TOF
AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS...
Definition: cv.hpp:2330
MS_binary_data_type
binary data type: Encoding type of binary data specifying the binary representation and precision...
Definition: cv.hpp:2000
UNIMOD_Glu__Met
Glu-&gt;Met: Glu-&gt;Met substitution.
Definition: cv.hpp:8597
UNIMOD_Label_13C_6__Dimethyl
Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.
Definition: cv.hpp:8345
MS_DE
DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in deso...
Definition: cv.hpp:1013
MS_product_ion_mobility
product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectromet...
Definition: cv.hpp:6152
MS_Progenesis_peptide_raw_abundance
Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-M...
Definition: cv.hpp:5927
MS_accurate_mass
accurate mass: An experimentally determined mass that is can be to determine a unique elemental formu...
Definition: cv.hpp:830
MS_Sequest_InfoAndLog
Sequest:InfoAndLog:
Definition: cv.hpp:3608
UNIMOD_Acetyl
Acetyl: Acetylation.
Definition: cv.hpp:6452
UNIMOD_TMPP_Ac
TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative...
Definition: cv.hpp:8066
UNIMOD_NEMsulfurWater
NEMsulfurWater: N-ethylmaleimideSulfurWater.
Definition: cv.hpp:9269
MS_ProteinExtractor_PhenyxUniqueScore
ProteinExtractor:PhenyxUniqueScore:
Definition: cv.hpp:4568
MS_modification_specificity_N_term
modification specificity N-term: As parameter for search engine: apply the modification only N-termin...
Definition: cv.hpp:3842
UNIMOD_ESP
ESP: ESP-Tag light d0.
Definition: cv.hpp:6623
MS_nier_johnson_geometry
nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection o...
Definition: cv.hpp:1289
UNIMOD_Xlink_DMP_de
Xlink:DMP-de: Monolink of DMP crosslinker to Lys or N-terminus.
Definition: cv.hpp:8441
UNIMOD_Tyr__Phe
Tyr-&gt;Phe: Tyr-&gt;Phe substitution.
Definition: cv.hpp:7874
UO_byte
byte: An information unit which is equal to 8 bits.
Definition: cv.hpp:9992
UNIMOD_DimethylamineGMBS
DimethylamineGMBS: Modified GMBS X linker for proteins.
Definition: cv.hpp:8258
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5393
UNIMOD_Acetyldeoxyhypusine
Acetyldeoxyhypusine: Acetyldeoxyhypusine.
Definition: cv.hpp:8477
MS_pulse_counting
pulse counting: Definition to do.
Definition: cv.hpp:521
MS_database_release_date_OBSOLETE
database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search datab...
Definition: cv.hpp:3389
UO_absorbance_unit
absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light throug...
Definition: cv.hpp:10100
MS_SpectraST_dot_bias
SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks...
Definition: cv.hpp:4487
UNIMOD_VIEVYQEQTGG
VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).
Definition: cv.hpp:8228
MS_cyclotron
cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged ...
Definition: cv.hpp:1265
MS_Bruker_BAF_nativeID_format
Bruker BAF nativeID format: scan=xsd:nonNegativeInteger.
Definition: cv.hpp:2828
MS_ms_level
ms level: Stages of ms achieved in a multi stage mass spectrometry experiment.
Definition: cv.hpp:1979
UNIMOD_Phosphopropargyl
Phosphopropargyl: Phospho-propargylamine.
Definition: cv.hpp:8303
UNIMOD_Trp__Gln
Trp-&gt;Gln: Trp-&gt;Gln substitution.
Definition: cv.hpp:9047
MS_MGF_raw_scans_OBSOLETE
MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw sca...
Definition: cv.hpp:4478
UNIMOD_Hep
Hep: Heptose.
Definition: cv.hpp:7376
MS_64_bit_float
64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.
Definition: cv.hpp:2015
MS_fraction_identifier
fraction identifier: Identier string that describes the sample fraction. This identifer should contai...
Definition: cv.hpp:3110
MS_ProteomeDiscoverer_Number_of_input3_spectra
ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.
Definition: cv.hpp:5438
MS_DirecTag
DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.
Definition: cv.hpp:4994
UNIMOD_Val__Gln
Val-&gt;Gln: Val-&gt;Gln substitution.
Definition: cv.hpp:9002
MS_TargetAnalysis
TargetAnalysis: Bruker TargetAnalysis software.
Definition: cv.hpp:2723
MS_4000_QTRAP_OBSOLETE
4000 QTRAP: AB SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.
Definition: cv.hpp:3152
MS_contact_email
contact email: Email address of the contact person or organization.
Definition: cv.hpp:2258
UO_base_unit
base unit: A unit which is one of a particular measure to which all measures of that type can be rela...
Definition: cv.hpp:9434
UNIMOD_Arg__Asn
Arg-&gt;Asn: Arg-&gt;Asn substitution.
Definition: cv.hpp:8924
UNIMOD_Gly__Val
Gly-&gt;Val: Gly-&gt;Val substitution.
Definition: cv.hpp:7589
UO_second
second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation correspo...
Definition: cv.hpp:9329
MS_stored_waveform_inverse_fourier_transform
stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-...
Definition: cv.hpp:1241
MS_desorption_electrospray_ionization
desorption electrospray ionization: Combination of electrospray and desorption ionization method that...
Definition: cv.hpp:6305
MS_mzML_file
mzML file: Proteomics Standards Inititative mzML file format.
Definition: cv.hpp:2243
MS_PDA_spectrum_OBSOLETE
PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum)...
Definition: cv.hpp:2363
UNIMOD_Phenylisocyanate
Phenylisocyanate: Phenyl isocyanate.
Definition: cv.hpp:7229
MS_Progenesis_automatic_alignment
Progenesis automatic alignment: Automatic RT alignment of Progenesis software.
Definition: cv.hpp:5843
MS_Sonar_Score
Sonar:Score: The Sonar score.
Definition: cv.hpp:4745
MS_ProteinScape_IntensityCoverage
ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calcul...
Definition: cv.hpp:4754
UNIMOD_Phe__Glu
Phe-&gt;Glu: Phe-&gt;Glu substitution.
Definition: cv.hpp:8627
MS_FIB
FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ion...
Definition: cv.hpp:1763
MS_ProteomeDiscoverer_Highest_Charge_State
ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out...
Definition: cv.hpp:5174
MS_MAT900XP_Trap
MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.
Definition: cv.hpp:722
MS_nanospray_inlet
nanospray inlet: Nanospray Inlet.
Definition: cv.hpp:1895
MS_peak_list_raw_scans
peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list...
Definition: cv.hpp:2921
MS_ProteomeDiscoverer_Mascot_Weight_of_A_Ions
ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching...
Definition: cv.hpp:5477
MS_Single_Stage_Mass_Spectrometry
Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment ...
Definition: cv.hpp:2201
UNIMOD_Ala__Gly
Ala-&gt;Gly: Ala-&gt;Gly substitution.
Definition: cv.hpp:7496
MS_Acquity_UPLC_PDA
Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.
Definition: cv.hpp:2993
UNIMOD_AEC_MAEC
AEC-MAEC: Aminoethylcysteine.
Definition: cv.hpp:7358
MS_ProteomeDiscoverer_Mascot_Weight_of_B_Ions
ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching...
Definition: cv.hpp:5480
MS_mass_spectrograph_obsolete
mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-ch...
Definition: cv.hpp:1277
UO_kilogram_per_liter
kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by t...
Definition: cv.hpp:9815
MS_frag__v_ion
frag: v ion: Fragmentation information, type of product: v ion.
Definition: cv.hpp:3983
MS_frag__c_ion___NH3
frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.
Definition: cv.hpp:4787
MS_PureDisk
PureDisk: BrukerPureDisk software.
Definition: cv.hpp:2714
UO_conduction_unit
conduction unit: A unit which represents a standard measurement of the transmission of an entity thro...
Definition: cv.hpp:10076
UNIMOD_Delta_H_4_C_2_
Delta:H(4)C(2): Acetaldehyde +28.
Definition: cv.hpp:6884
UNIMOD_Tyr__His
Tyr-&gt;His: Tyr-&gt;His substitution.
Definition: cv.hpp:7883
MS_HCTultra
HCTultra: Bruker Daltonics&#39; HCTultra: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:2603
MS_normalized_peptide_value
normalized peptide value: Normalized peptide value.
Definition: cv.hpp:5798
UNIMOD_Thr__Trp
Thr-&gt;Trp: Thr-&gt;Trp substitution.
Definition: cv.hpp:8981
UNIMOD_CarboxymethylDTT
CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.
Definition: cv.hpp:8156
MS_collision_energy_ramp_start
collision energy ramp start: Collision energy at the start of the collision energy ramp...
Definition: cv.hpp:6314
MS_sliding_average_smoothing
sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each poin...
Definition: cv.hpp:2882
UNIMOD_Arg__Npo
Arg-&gt;Npo: Arginine replacement by Nitropyrimidyl ornithine.
Definition: cv.hpp:8081
UNIMOD_PhosphoribosyldephosphoCoA
PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.
Definition: cv.hpp:7190
UO_fraction
fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denomin...
Definition: cv.hpp:9866
MS_param__y_ion_H2O
param: y ion-H2O: Ion y - H2O if y significant and fragment includes STED.
Definition: cv.hpp:3755
MS_mass_spectrometer
mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of io...
Definition: cv.hpp:1280
UNIMOD_Glu__Lys
Glu-&gt;Lys: Glu-&gt;Lys substitution.
Definition: cv.hpp:7553
UNIMOD_Arg
Arg: Addition of arginine due to transpeptidation.
Definition: cv.hpp:9179
MS_multichannel_plate
multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array o...
Definition: cv.hpp:503
MS_protein_modifications
protein modifications: Encoding of modifications of the protein sequence from the specified accession...
Definition: cv.hpp:3347
MS_ProteomeDiscoverer_SN_Threshold
ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.
Definition: cv.hpp:5087
MS_eV_OBSOLETE
eV (electron volt): A non-SI unit of energy (eV) defined as the energy acquired by a particle contain...
Definition: cv.hpp:611
MS_selected_ion_m_z
selected ion m/z: Mass-to-charge ratio of the ion selected for fragmentation.
Definition: cv.hpp:2741
UO_parts_per_quadrillion
parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given sub...
Definition: cv.hpp:9809
UNIMOD_Phe__Met
Phe-&gt;Met: Phe-&gt;Met substitution.
Definition: cv.hpp:8639
MS_Phenyx_NumberOfMC
Phenyx:NumberOfMC:
Definition: cv.hpp:4433
UO_luminance_unit
luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given are...
Definition: cv.hpp:9458
UNIMOD_ESP_2H_10_
ESP:2H(10): ESP-Tag heavy d10.
Definition: cv.hpp:6626
UO_luminous_flux_unit
luminous flux unit: A unit which is a standard measure of the flow of radiant energy.
Definition: cv.hpp:9650
MS_sample_mass
sample mass: Total mass of sample used.
Definition: cv.hpp:104
UNIMOD_Isopropylphospho
Isopropylphospho: O-Isopropylphosphorylation.
Definition: cv.hpp:7112
MS_ion_to_photon_detector
ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that...
Definition: cv.hpp:1460
UNIMOD_Hydroxycinnamyl
Hydroxycinnamyl: Hydroxycinnamyl.
Definition: cv.hpp:7217
id_list parentsIsA
Definition: cv.hpp:10193
MS_LCQ_Fleet
LCQ Fleet: LCQ Fleet.
Definition: cv.hpp:2186
MS_OMEGA_2001
OMEGA-2001: IonSpec OMEGA-2001 MS.
Definition: cv.hpp:746
MS_TDC
TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital repr...
Definition: cv.hpp:527
MS_transition_predicted_by_informatic_analysis
transition predicted by informatic analysis: The transition has been predicted by informatics softwar...
Definition: cv.hpp:3287
UNIMOD_NBS_13C_6_
NBS:13C(6): Shimadzu NBS-13C.
Definition: cv.hpp:6797
UNIMOD_Asn__Lys
Asn-&gt;Lys: Asn-&gt;Lys substitution.
Definition: cv.hpp:7694
UNIMOD_Cation_Ni_II_
Cation:Ni[II]: Replacement of 2 protons by nickel.
Definition: cv.hpp:8285
UNIMOD_Dioxidation
Dioxidation: Dihydroxy.
Definition: cv.hpp:7268
UO_hertz
hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second...
Definition: cv.hpp:9617
MS_Voyager_DE_STR
Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.
Definition: cv.hpp:812
MS_nth_generation_product_ion_spectrum_OBSOLETE
nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which t...
Definition: cv.hpp:1427
MS_label_free_raw_feature_quantitation
label-free raw feature quantitation: Label-free raw feature quantitation.
Definition: cv.hpp:6332
UNIMOD_Lys__Cys
Lys-&gt;Cys: Lys-&gt;Cys substitution.
Definition: cv.hpp:8744
MS_filter_string
filter string: A string unique to Thermo instrument describing instrument settings for the scan...
Definition: cv.hpp:1982
UNIMOD_Tyr__Xle
Tyr-&gt;Xle: Tyr-&gt;Leu/Ile substitution.
Definition: cv.hpp:9092
UNIMOD_Cys__Tyr
Cys-&gt;Tyr: Cys-&gt;Tyr substitution.
Definition: cv.hpp:7514
MS_SpectraST_dot
SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.
Definition: cv.hpp:4484
MS_no_compression
no compression: No Compression.
Definition: cv.hpp:2177
MS_peak_intensity
peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum...
Definition: cv.hpp:233
MS_tube_lens_voltage
tube lens voltage: Potential difference setting of the tube lens in volts.
Definition: cv.hpp:3173
UNIMOD_Nitrosyl
Nitrosyl: S-nitrosylation.
Definition: cv.hpp:6929
MS_high_energy_collision_induced_dissociation
high-energy collision-induced dissociation: A collision-induced dissociation process wherein the proj...
Definition: cv.hpp:1679
MS_peptide_ratio
peptide ratio: Peptide ratio.
Definition: cv.hpp:3695
UNIMOD_Cation_Fe_II_
Cation:Fe[II]: Replacement of 2 protons by iron.
Definition: cv.hpp:8282
UNIMOD_Palmitoleyl
Palmitoleyl: Palmitoleyl.
Definition: cv.hpp:7280
MS_ACQUITY_UPLC
ACQUITY UPLC: Waters LC-system.
Definition: cv.hpp:5531
MS_OMSSA
OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.
Definition: cv.hpp:4664
MS_UltroTOF_Q
UltroTOF-Q: Bruker Daltonics&#39; UltroTOF-Q: ESI Q-TOF (MALDI optional).
Definition: cv.hpp:4856
UNIMOD_Label_15N_1_
Label:15N(1): 15N(1).
Definition: cv.hpp:8360
UNIMOD_Label_13C_1_2H_3__Oxidation
Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.
Definition: cv.hpp:8132
UNIMOD_Lys__Glu
Lys-&gt;Glu: Lys-&gt;Glu substitution.
Definition: cv.hpp:7631
UNIMOD_Didehydro
Didehydro: 2-amino-3-oxo-butanoic_acid.
Definition: cv.hpp:7205
MS_search_time_taken
search time taken: The time taken to complete the search in seconds.
Definition: cv.hpp:3440
UNIMOD_NDA
NDA: Naphthalene-2,3-dicarboxaldehyde.
Definition: cv.hpp:7352
MS_intensity_array
intensity array: A data array of intensity values.
Definition: cv.hpp:1991
UNIMOD_FMNH
FMNH: Flavin mononucleotide.
Definition: cv.hpp:7223
MS_peptide_spectrum_match_scoring_algorithm
peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a ...
Definition: cv.hpp:6137
MS_protein_description
protein description: The protein description line from the sequence entry in the source database FAST...
Definition: cv.hpp:3563
UNIMOD_His__Val
His-&gt;Val: His-&gt;Val substitution.
Definition: cv.hpp:8717
UNIMOD_4AcAllylGal
4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine...
Definition: cv.hpp:8174
MS_Proteomics_Standards_Initiative_Mass_Spectrometry_Vocabularies
Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass ...
Definition: cv.hpp:92
MS_ion_selection_attribute
ion selection attribute: Ion selection properties that are associated with a value.
Definition: cv.hpp:1796
UNIMOD_Cys__Phe
Cys-&gt;Phe: Cys-&gt;Phe substitution.
Definition: cv.hpp:7505
UO_dimensionless_unit
dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a nume...
Definition: cv.hpp:9851
MS_instrument_serial_number
instrument serial number: Serial Number of the instrument.
Definition: cv.hpp:2033
MS_Proteome_Discoverer
Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins...
Definition: cv.hpp:2462
UNIMOD_pupylation
pupylation: Addition of GGE.
Definition: cv.hpp:9137
MS_Atmostpheric_Pressure_Photoionization_OBSOLETE
Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant...
Definition: cv.hpp:980
UNIMOD_FP_Biotin
FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.
Definition: cv.hpp:7037
UO_newton
newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass...
Definition: cv.hpp:9623
MS_ProteomeDiscoverer_SEQUEST_Weight_of_a_Ions
ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative fac...
Definition: cv.hpp:5312
UNIMOD_iTRAQ8plex_13C_6_15N_2_
iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 &amp; 121.
Definition: cv.hpp:7946
MS_charge_stripping_reaction
charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive ch...
Definition: cv.hpp:1661
UO_kilodalton
kilodalton: A mass unit which is equal to one thousand daltons.
Definition: cv.hpp:9959
std::string fullName
the usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).
Definition: cv.hpp:10165
MS_MALDI_LTQ_XL
MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.
Definition: cv.hpp:2438
MS_Agilent_software
Agilent software: Agilent software for data acquisition and analysis.
Definition: cv.hpp:2576
MS_electron_transfer_dissociation
electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmen...
Definition: cv.hpp:2288
MS_absolute_quantity
absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample...
Definition: cv.hpp:3710
UNIMOD_Delta_H_4_C_3_O_1_
Delta:H(4)C(3)O(1): Acrolein addition +56.
Definition: cv.hpp:6851
MS_constant_neutral_mass_loss
constant neutral mass loss: A spectrum formed of all product ions that have been produced with a sele...
Definition: cv.hpp:437
MS_V8_DE
V8-DE:
Definition: cv.hpp:4187
MS_time_delayed_fragmentation_spectrum
time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a tim...
Definition: cv.hpp:2897
MS_PA
PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy c...
Definition: cv.hpp:941
UNIMOD_DNCB_hapten
DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).
Definition: cv.hpp:9275
MS_photodissociation
photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one...
Definition: cv.hpp:1721
UNIMOD_Lys__Thr
Lys-&gt;Thr: Lys-&gt;Thr substitution.
Definition: cv.hpp:7625
MS_product_ion_drift_time
product ion drift time: The ion drift time of an MS2 product ion.
Definition: cv.hpp:6155
UNIMOD_2_succinyl
2-succinyl: S-(2-succinyl) cysteine.
Definition: cv.hpp:8297
MS_SHA_1
SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Secu...
Definition: cv.hpp:2156
MS_ProteomeDiscoverer_Peptide_NTerminus
ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used duri...
Definition: cv.hpp:5285
UNIMOD_Hex1HexNAc1
Hex1HexNAc1: Hex1HexNAc1.
Definition: cv.hpp:8039
UNIMOD_Gln__Asn
Gln-&gt;Asn: Gln-&gt;Asn substitution.
Definition: cv.hpp:8897
MS_electromagnetic_radiation_spectrum
electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as ...
Definition: cv.hpp:2945
UNIMOD_Val__Arg
Val-&gt;Arg: Val-&gt;Arg substitution.
Definition: cv.hpp:9005
UNIMOD_Trp__Met
Trp-&gt;Met: Trp-&gt;Met substitution.
Definition: cv.hpp:9038
UNIMOD_Cys__Arg
Cys-&gt;Arg: Cys-&gt;Arg substitution.
Definition: cv.hpp:7517
MS_MS_GF_SpecEValue
MS-GF:SpecEValue: MS-GF spectral E-value.
Definition: cv.hpp:6434
MS_MaxQuant_peptide_counts__all_
MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.
Definition: cv.hpp:5942
MS_m_z_array
m/z array: A data array of m/z values.
Definition: cv.hpp:1988
UNIMOD_Label_18O_2_
Label:18O(2): O18 label at both C-terminal oxygens.
Definition: cv.hpp:6824
MS_OMSSA_e_value_threshold
OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.
Definition: cv.hpp:4580
MS_MRM_OBSOLETE
MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring...
Definition: cv.hpp:446
MS_principal_ion
principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of ...
Definition: cv.hpp:1532
MS_orthogonal_extraction
orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel int...
Definition: cv.hpp:1352
MS_OmniFlex
OmniFlex: Bruker Daltonics&#39; OmniFlex: MALDI TOF.
Definition: cv.hpp:749
UO_cubic_centimeter
cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3]...
Definition: cv.hpp:9590
MS_Sequest_Sum
Sequest:Sum:
Definition: cv.hpp:4364
MS_target_inclusion_exclusion_priority
target inclusion exclusion priority: A priority setting specifying whether included or excluded targe...
Definition: cv.hpp:3305
MS_ProteomeDiscoverer_Mascot_User_Name_OBSOLETE
ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.
Definition: cv.hpp:5204
UO_gray
gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one ...
Definition: cv.hpp:9698
MS_Phenyx_Default_Parent_Charge
Phenyx:Default Parent Charge:
Definition: cv.hpp:4373
UNIMOD_Xle__Cys
Xle-&gt;Cys: Leu/Ile-&gt;Cys substitution.
Definition: cv.hpp:8726
MS_Mascot_Instrument
Mascot:Instrument: Type of instrument used to acquire the data in the raw file.
Definition: cv.hpp:5216
MS_ATAQS
ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the result...
Definition: cv.hpp:3323
MS_Lys_C_P
Lys-C/P:
Definition: cv.hpp:4175
MS_confident_distinct_peptide_sequences
confident distinct peptide sequences: This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of &#39;confident&#39; must be qualified elsewhere.
Definition: cv.hpp:3593
MS_spectrum_instrument_description
spectrum instrument description: Terms used to describe the spectrum.
Definition: cv.hpp:1811
MS_mass_trace_reporting__rectangles
mass trace reporting: rectangles: The mass trace of the features of this feature list specifies recta...
Definition: cv.hpp:5726
MS_autoflex_II_TOF_TOF
autoflex II TOF/TOF: Bruker Daltonics&#39; autoflex II TOF/TOF: MALDI TOF.
Definition: cv.hpp:4892
MS_ambiguous_residues
ambiguous residues: Children of this term describe abiguous residues.
Definition: cv.hpp:4319
UNIMOD_Hex_5_HexNAc_4_
Hex(5)HexNAc(4): Biantennary.
Definition: cv.hpp:7007
UNIMOD_Propionyl
Propionyl: Propionate labeling reagent light form (N-term &amp; K).
Definition: cv.hpp:6593
MS_Scaffold__Minimum_Protein_Probability
Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted...
Definition: cv.hpp:4961
UO_micromolal
micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m...
Definition: cv.hpp:9509
MS_RawFilesGroup_attribute
RawFilesGroup attribute: Attribute describing, how raw files build a raw file group.
Definition: cv.hpp:5717
UNIMOD_Ala__Lys
Ala-&gt;Lys: Ala-&gt;Lys substitution.
Definition: cv.hpp:8495
UNIMOD_Glucuronyl
Glucuronyl: N-glucuronylation.
Definition: cv.hpp:6584
MS_frag__y_ion___H2O
frag: y ion - H2O: Fragmentation information, type of product: y ion without water.
Definition: cv.hpp:3935
MS_source_attribute
source attribute: Property of a source device that need a value.
Definition: cv.hpp:1886
MS_CF_FAB
CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte...
Definition: cv.hpp:275
MS_Profound_z_value
Profound:z value: The Profound z value.
Definition: cv.hpp:4733
MS_average_mass
average mass: The mass of an ion or molecule calculated using the average mass of each element weight...
Definition: cv.hpp:833
MS_monoisotopic_mass
monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isot...
Definition: cv.hpp:908
UO_angular_acceleration_unit
angular acceleration unit: A unit which is a standard measure of the rate of change of angular veloci...
Definition: cv.hpp:9449
UNIMOD_Lys__AminoadipicAcid
Lys-&gt;AminoadipicAcid: Alpha-amino adipic acid.
Definition: cv.hpp:7157
UNIMOD_mTRAQ_13C_3_15N_1_
mTRAQ:13C(3)15N(1): MTRAQ medium.
Definition: cv.hpp:8144
UNIMOD_Cyano
Cyano: Cyano.
Definition: cv.hpp:7301
UO_gram_per_cubic_centimeter
gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided b...
Definition: cv.hpp:9551
MS_flexImaging
flexImaging: Bruker software for data analysis.
Definition: cv.hpp:2675
MS_Surveyor_PDA
Surveyor PDA: Surveyor PDA.
Definition: cv.hpp:2372
UNIMOD_MercaptoEthanol
MercaptoEthanol: 2-OH-ethyl thio-Ser.
Definition: cv.hpp:8219
MS_IsoProbe
IsoProbe: Waters IsoProbe MS.
Definition: cv.hpp:695
MS_ProteomeDiscoverer_phosphoRS_site_probability
ProteomeDiscoverer:phosphoRS site probability: Estimate of the probability that the respective site i...
Definition: cv.hpp:6167
MS_frag__a_ion
frag: a ion: Fragmentation information, type of product: a ion.
Definition: cv.hpp:3959
UNIMOD_Dipyrrolylmethanemethyl
Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.
Definition: cv.hpp:7244
MS_z
z (charge state): The charge state of the ion, single or multiple and positive or negatively charged...
Definition: cv.hpp:230
MS_Bruker_Daltonics_esquire_series
Bruker Daltonics esquire series:
Definition: cv.hpp:4838
MS_TSQ_Quantum_Ultra_AM
TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.
Definition: cv.hpp:2738
MS_p_value_for_peptides
p-value for peptides: Peptide identification confidence metric p-value.
Definition: cv.hpp:5858
MS_mass_resolving_power_OBSOLETE
mass resolving power: In a mass spectrum, the observed mass divided by the difference between two mas...
Definition: cv.hpp:944
MS_increasing_m_z_scan
increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers...
Definition: cv.hpp:425
MS_ion_attribute
ion attribute: Ion properties that are associated with a value.
Definition: cv.hpp:1967
MS_collision_energy
collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting i...
Definition: cv.hpp:242
MS_32_bit_float
32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.
Definition: cv.hpp:2009
UNIMOD_Methyl_Deamidated
Methyl+Deamidated: Deamidation followed by a methylation.
Definition: cv.hpp:7448
MS_frag__precursor_ion
frag: precursor ion: Fragmentation information, type of product: precursor ion.
Definition: cv.hpp:4808
MS_box_smoothing
box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two o...
Definition: cv.hpp:2876
MS_Isotopomeric_ion
Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their p...
Definition: cv.hpp:1514
MS_peak_targeting_suitability_rank
peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suit...
Definition: cv.hpp:3266
UO_electrical_conduction_unit
electrical conduction unit: A unit which represents a standard measurement of the movement of electri...
Definition: cv.hpp:10079
MS_LCMS_2010A
LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.
Definition: cv.hpp:2318
UNIMOD_iTRAQ8plex
iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 &amp; 117.
Definition: cv.hpp:7943
UO_roentgen
roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive an...
Definition: cv.hpp:9704
UNIMOD_Gly__Ser
Gly-&gt;Ser: Gly-&gt;Ser substitution.
Definition: cv.hpp:7580
UNIMOD_Tyr__Gln
Tyr-&gt;Gln: Tyr-&gt;Gln substitution.
Definition: cv.hpp:9077
MS_Varian_instrument_model
Varian instrument model: Varian instrument model.
Definition: cv.hpp:1907
MS_fragment_ion_intensity
fragment ion intensity (product ion intensity): The intensity of the product ion. ...
Definition: cv.hpp:3950
MS_decoy_DB_derived_from
decoy DB derived from: The name of the database, the search database was derived from.
Definition: cv.hpp:4094
MS_PTM_scoring_algorithm_version
PTM scoring algorithm version: Version of the post-translational modification scoring algorithm...
Definition: cv.hpp:6170
UNIMOD_His__Asp
His-&gt;Asp: His-&gt;Asp substitution.
Definition: cv.hpp:7079
MS_Progenesis_peptide_count
Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.
Definition: cv.hpp:5933
UNIMOD_Ethanedithiol
Ethanedithiol: EDT.
Definition: cv.hpp:6845
UNIMOD_Ser__Gln
Ser-&gt;Gln: Ser-&gt;Gln substitution.
Definition: cv.hpp:8951
UNIMOD_Pro__Xle
Pro-&gt;Xle: Pro-&gt;Leu/Ile substitution.
Definition: cv.hpp:7727
MS_ProteinPilot_Software
ProteinPilot Software: AB SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant...
Definition: cv.hpp:2498
MS_analog_digital_converter
analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electron...
Definition: cv.hpp:515
MS_mzML_unique_identifier
mzML unique identifier: mzMLid=xsd:IDREF.
Definition: cv.hpp:4829
MS_NBRF_PIR
NBRF PIR: The NBRF PIR was used as format.
Definition: cv.hpp:4301
MS_Negative_Ion_chemical_ionization
Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions...
Definition: cv.hpp:1163
UNIMOD_Met_loss
Met-loss: Removal of initiator methionine from protein N-terminus.
Definition: cv.hpp:8006
MS_CRM
CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and...
Definition: cv.hpp:1001
MS_co_author
co-author: One of a set of authors associated with a publication or release.
Definition: cv.hpp:6383
UNIMOD_HexNAc_2_
HexNAc(2): HexNAc2.
Definition: cv.hpp:6734
UNIMOD_Tyr__Val
Tyr-&gt;Val: Tyr-&gt;Val substitution.
Definition: cv.hpp:9086
UNIMOD_ethylamino
ethylamino: Ethyl amino.
Definition: cv.hpp:8216
MS_product_interpretation_rank
product interpretation rank: The integer rank given an interpretation of an observed product ion...
Definition: cv.hpp:3326
MS_6140_Quadrupole_LC_MS
6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1850
MS_external_reference_keyword
external reference keyword: Free text attribute that can enrich the information about an entity...
Definition: cv.hpp:6020
UNIMOD_Propiophenone
Propiophenone: Propiophenone.
Definition: cv.hpp:9230
UO_magnetic_flux_density_unit
magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field...
Definition: cv.hpp:9974
MS_FileMerger
FileMerger: Merges several MS files into one file.
Definition: cv.hpp:2783
MS_DB_PI_filter
DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI)...
Definition: cv.hpp:3407
MS_chromatography
chromatography: Chromatographic conditions used to obtain the sample.
Definition: cv.hpp:269
MS_Conversion_to_mzXML
Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format...
Definition: cv.hpp:2084
MS_ProteinExtractor_SequestUniqueScore
ProteinExtractor:SequestUniqueScore:
Definition: cv.hpp:4544
MS_WIFF_nativeID_format
WIFF nativeID format: sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegati...
Definition: cv.hpp:2822
MS_CAD
CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation...
Definition: cv.hpp:584
MS_ProteomeDiscoverer_SEQUEST_Weight_of_d_Ions
ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5321
MS_minimum_information_standard
minimum information standard: A specification of a minimum amount of information needed to reproduce ...
Definition: cv.hpp:3245
MS_radial_ejection_linear_ion_trap
radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the...
Definition: cv.hpp:389
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr paramete...
Definition: cv.hpp:5363
MS_Conversion_to_dta
Conversion to dta: Conversion to dta format.
Definition: cv.hpp:2732
MS_APEX_value
APEX value: The APEX value of protein abundance, produced from the APEX software. ...
Definition: cv.hpp:5966
UO_rad
rad: An absorbed dose unit which is equal to 0.01 gray (Gy).
Definition: cv.hpp:9701
MS_ProteomeDiscoverer_SEQUEST_CTerminal_Modification
ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used durin...
Definition: cv.hpp:5258
MS_signal_to_noise_array
signal to noise array: A data array of signal-to-noise values.
Definition: cv.hpp:1997
UNIMOD_Lys__Allysine
Lys-&gt;Allysine: Lysine oxidation to aminoadipic semialdehyde.
Definition: cv.hpp:7088
MS_ProteinScape_PFFSolverScore
ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.
Definition: cv.hpp:4751
MS_modified_nucleic_acid_sequence
modified nucleic acid sequence: Modified nucleic acid sequence after a nucleic acid base modification...
Definition: cv.hpp:6365
UNIMOD_Cresylphosphate
Cresylphosphate: O-toluyl-phosphorylation.
Definition: cv.hpp:9113
MS_fringing_field
fringing field: The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element.
Definition: cv.hpp:1331
MS_PerSeptive_PKS_file
PerSeptive PKS file:
Definition: cv.hpp:4004
UNIMOD_Trp__Ser
Trp-&gt;Ser: Trp-&gt;Ser substitution.
Definition: cv.hpp:7859
UO_kilogram_per_hectare
kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divid...
Definition: cv.hpp:10142
MS_ProteinScape_SequestMetaScore
ProteinScape:SequestMetaScore: The Sequest meta score calculated by ProteinScape from the original Se...
Definition: cv.hpp:4757
UNIMOD_Label_2H_4_13C_1_
Label:2H(4)13C(1): Label:2H(4)13C(1).
Definition: cv.hpp:9209
UNIMOD_Phe__Arg
Phe-&gt;Arg: Phe-&gt;Arg substitution.
Definition: cv.hpp:8651
MS_ProteomeDiscoverer_Maximum_Peptides_Output
ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum...
Definition: cv.hpp:5273
MS_MaxQuant_Phospho__STY__Probabilities
MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software...
Definition: cv.hpp:6200
UNIMOD_His__Lys
His-&gt;Lys: His-&gt;Lys substitution.
Definition: cv.hpp:8705
UNIMOD_Ahx2_Hsl
Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.
Definition: cv.hpp:8414
MS_ProteomeDiscoverer_Source_Files_old_OBSOLETE
ProteomeDiscoverer:Source Files old: Input pepXML files (old).
Definition: cv.hpp:5465
MS_Spectrum_Mill_for_MassHunter_Workstation
Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of...
Definition: cv.hpp:2570
MS_protein_short_name
protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).
Definition: cv.hpp:3191
MS_MaxQuant_PEP
MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.
Definition: cv.hpp:5951
MS_SQID_protein_score
SQID:protein score: The SQID result &#39;protein score&#39;.
Definition: cv.hpp:5915
MS_ProteomeDiscoverer_Dynamic_Modifications
ProteomeDiscoverer:Dynamic Modifications: Determine dynamic post-translational modifications (PTMs)...
Definition: cv.hpp:5180
UO_picomolar
picomolar: A unit of molarity which is equal to 10^[-12] M.
Definition: cv.hpp:9497
UNIMOD_EQAT
EQAT: EAPTA d0.
Definition: cv.hpp:6836
MS_four_sample_run
four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).
Definition: cv.hpp:5711
MS_Percolator
Percolator: Percolator.
Definition: cv.hpp:4709
UNIMOD_AEC_MAEC_2H_4_
AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.
Definition: cv.hpp:8036
MS_solution
solution: State if the sample is in solution form.
Definition: cv.hpp:260
UNIMOD_Label_13C_9_15N_1_
Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.
Definition: cv.hpp:6914
MS_search_tolerance_specification
search tolerance specification:
Definition: cv.hpp:4466
MS_LTQ_Velos
LTQ Velos: Thermo Scientific LTQ Velos MS.
Definition: cv.hpp:3101
UNIMOD_C8_QAT
C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.
Definition: cv.hpp:7418
UNIMOD_Label_2H_3_
Label:2H(3): Trideuteration.
Definition: cv.hpp:6902
MS_post_source_decay
post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product...
Definition: cv.hpp:596
MS_AB_SCIEX_instrument_model
AB SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems...
Definition: cv.hpp:533
UNIMOD_DFDNB
DFDNB: Addition of DFDNB crosslinker.
Definition: cv.hpp:8063
UNIMOD_OxProBiotin
OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:6665
UNIMOD_Glu__Pro
Glu-&gt;Pro: Glu-&gt;Pro substitution.
Definition: cv.hpp:8603
UNIMOD_Archaeol
Archaeol: S-diphytanylglycerol diether.
Definition: cv.hpp:7226
UNIMOD_Carbofuran
Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.
Definition: cv.hpp:8327
MS_PROTEINEER_LC
PROTEINEER-LC: Bruker PROTEINEER-LC software.
Definition: cv.hpp:2708
MS_MS_MS_in_Time
MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a singl...
Definition: cv.hpp:1412
MS_4000_QTRAP
4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.
Definition: cv.hpp:617
MS_Exactive
Exactive: Thermo Scientific Exactive MS.
Definition: cv.hpp:2459
MS_Mascot_ShowHomologousProteinsWithSubsetOfPeptides
Mascot:ShowHomologousProteinsWithSubsetOfPeptides:
Definition: cv.hpp:4208
UO_candela
candela: A luminous intensity unit which equal to the luminous intensity, in a given direction...
Definition: cv.hpp:9341
MS_IRMPD
IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates ...
Definition: cv.hpp:1109
MS_Sequest
Sequest:
Definition: cv.hpp:3893
MS_Sequest_summary
Sequest summary: Source file for this mzIdentML was a Sequest summary page (proteins).
Definition: cv.hpp:4001
UNIMOD_Trp__Lys
Trp-&gt;Lys: Trp-&gt;Lys substitution.
Definition: cv.hpp:9035
MS_stainless_steel_plate
stainless steel plate: Stainless steel plate.
Definition: cv.hpp:6068
MS_tag_search
tag search: A sequence tag search.
Definition: cv.hpp:3545
MS_micrOTOF
micrOTOF: Bruker Daltonics&#39; micrOTOF: ESI TOF, APCI, APPI.
Definition: cv.hpp:2615
UO_molal
molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram o...
Definition: cv.hpp:9503
MS_ProteinScape_SearchResultId
ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape d...
Definition: cv.hpp:4724
UNIMOD_ICDID
ICDID: Isotope-Coded Dimedone light form.
Definition: cv.hpp:8420
UNIMOD_Pentylamine
Pentylamine: Labeling transglutaminase substrate on glutamine side chain.
Definition: cv.hpp:8048
MS_source_file
source file (raw data file): Describes the type of file and its content.
Definition: cv.hpp:2183
MS_protein_group_subset_relationship
protein group/subset relationship: Branch containing protein group/subset relationships.
Definition: cv.hpp:3602
UNIMOD_Nmethylmaleimide
Nmethylmaleimide: Nmethylmaleimide.
Definition: cv.hpp:7016
UNIMOD_CAMthiopropanoyl
CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.
Definition: cv.hpp:6968
MS_LightSight_Software
LightSight Software: AB SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification...
Definition: cv.hpp:2495
UO_cubic_meter
cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length...
Definition: cv.hpp:9587
UO_length_unit
length unit: A unit which is a standard measure of the distance between two points.
Definition: cv.hpp:9302
MS_Bruker_Daltonics_BioTOF_series
Bruker Daltonics BioTOF series:
Definition: cv.hpp:4844
MS_product_ion_m_z_delta
product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion m...
Definition: cv.hpp:3257
MS_Shimadzu_instrument_model
Shimadzu instrument model: Shimadzu corporation instrument model.
Definition: cv.hpp:542
MS_time_array
time array: A data array of relative time offset values from a reference time.
Definition: cv.hpp:2279
UNIMOD_SPITC
SPITC: 4-sulfophenyl isothiocyanate.
Definition: cv.hpp:6899
MS_charge_induced_fragmentation
charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjac...
Definition: cv.hpp:1652
MS_TSQ_Quantum
TSQ Quantum: ThermoFinnigan TSQ Quantum MS.
Definition: cv.hpp:797
UNIMOD_Asn__Arg
Asn-&gt;Arg: Asn-&gt;Arg substitution.
Definition: cv.hpp:8837
UNIMOD_Triiodothyronine
Triiodothyronine: Triiodo.
Definition: cv.hpp:7196
UNIMOD_Delta_S__1_Se_1_
Delta:S(-1)Se(1): Selenium replaces sulfur.
Definition: cv.hpp:6791
MS_Acquity_TQD
Acquity TQD: Waters quadrupole based.
Definition: cv.hpp:5612
UO_density_unit
density unit: A unit which is a standard measure of the influence exerted by some mass...
Definition: cv.hpp:9839
MS_fed_supply_electrospray
fed supply electrospray: The sprayer is continuously fed with sample.
Definition: cv.hpp:6080
UNIMOD_Val__Glu
Val-&gt;Glu: Val-&gt;Glu substitution.
Definition: cv.hpp:7844
UNIMOD_TNBS
TNBS: Tri nitro benzene.
Definition: cv.hpp:7994
UO_parts_per_notation_unit
parts per notation unit: A dimensionless concentration notation which describes the amount of one sub...
Definition: cv.hpp:9791
MS_SRM_spectrum
SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/...
Definition: cv.hpp:2231
MS_data_stored_in_database
data stored in database: Source file for this mzIdentML was a data set in a database.
Definition: cv.hpp:3620
MS_product_ion_scan
product ion scan: The specific scan function or process that records product ion spectrum.
Definition: cv.hpp:452
UO_attomole
attomole: A substance unit equal to 10^[-18] mol.
Definition: cv.hpp:9431
MS_multiphoton_dissociation
multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a ...
Definition: cv.hpp:1724
UNIMOD_Gly__Ala
Gly-&gt;Ala: Gly-&gt;Ala substitution.
Definition: cv.hpp:7577
MS_frag__b_ion___H2O
frag: b ion - H2O: Fragmentation information, type of product: b ion without water.
Definition: cv.hpp:3932
UNIMOD_Cation_Mg_II_
Cation:Mg[II]: Replacement of 2 protons by magnesium.
Definition: cv.hpp:8294
MS_researcher
researcher:
Definition: cv.hpp:4073
MS_ProteomeDiscoverer_Source_file_extension_OBSOLETE
ProteomeDiscoverer:Source file extension: File type (if not pepXML).
Definition: cv.hpp:5459
MS_charge_remote_fragmentation
charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not...
Definition: cv.hpp:992
MS_m_z
m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion ...
Definition: cv.hpp:215
MS_peptide_identification_confidence_metric
peptide identification confidence metric: Peptide identification confidence metric for a peptide (p-v...
Definition: cv.hpp:3575
MS_data_transformation
data transformation: Terms used to describe types of data processing.
Definition: cv.hpp:1784
MS_ProteomeDiscoverer_Static_Modification_for_X
ProteomeDiscoverer:Static Modification for X: Static Modification for X.
Definition: cv.hpp:5420
UNIMOD_Lipoyl
Lipoyl: Lipoyl.
Definition: cv.hpp:6548
MS_predicted_pI
predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would no...
Definition: cv.hpp:3131
MS_MPD
MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption ...
Definition: cv.hpp:1727
MS_run_attribute
run attribute: Properties of the described run.
Definition: cv.hpp:3107
MS_Mascot_DAT_file
Mascot DAT file: Source file for this mzIdentML was a Mascot DAT file.
Definition: cv.hpp:3872
UNIMOD_Glu__Arg
Glu-&gt;Arg: Glu-&gt;Arg substitution.
Definition: cv.hpp:8606
MS_Xevo_G2_Tof
Xevo G2 Tof: Waters oa-ToF based.
Definition: cv.hpp:5600
UNIMOD_Phenylisocyanate_2H_5_
Phenylisocyanate:2H(5): D5-phenyl isocyanate.
Definition: cv.hpp:7232
UNIMOD_Lys
Lys: Addition of lysine due to transpeptidation.
Definition: cv.hpp:9212
UNIMOD_Glu__Trp
Glu-&gt;Trp: Glu-&gt;Trp substitution.
Definition: cv.hpp:8615
UNIMOD_Amidine
Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.
Definition: cv.hpp:6728
MS_Bruker_Daltonics_flex_series
Bruker Daltonics flex series:
Definition: cv.hpp:4841
MS_base_peak_m_z
base peak m/z: M/z value of the signal of highest intensity in the mass spectrum. ...
Definition: cv.hpp:1958
MS_kinetic_method
kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedur...
Definition: cv.hpp:1709
MS_cationized_molecule
cationized molecule: An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used.
Definition: cv.hpp:1484
MS_Waters_raw_file
Waters raw file: Waters data file found in a Waters RAW directory, generated from an MS acquisition...
Definition: cv.hpp:2024
MS_enhanced_multiply_charged_spectrum
enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared t...
Definition: cv.hpp:2894
MS_ProteomeDiscoverer_Target_FDR_Relaxed
ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR...
Definition: cv.hpp:5237
UNIMOD_Arg2PG
Arg2PG: Adduct of phenylglyoxal with Arg.
Definition: cv.hpp:8087
UO_unit_per_volume_unit
unit per volume unit: A concentration unit which is a standard measure of the number of units...
Definition: cv.hpp:9824
UO_solid_angle_unit
solid angle unit: A unit which is a standard measure of the angle formed by three or more planes inte...
Definition: cv.hpp:9671
UNIMOD_Gly__Xle
Gly-&gt;Xle: Gly-&gt;Leu/Ile substitution.
Definition: cv.hpp:8666
MS_SpectrumMill_Discriminant_Score
SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.
Definition: cv.hpp:4973
MS_Synapt_G2_S_HDMS
Synapt G2-S HDMS: Waters oa-ToF based.
Definition: cv.hpp:5585
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Charge_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of ...
Definition: cv.hpp:5099
UNIMOD_OxLysBiotin
OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:6659
MS_Conversion_to_mzData
Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file form...
Definition: cv.hpp:2087
UNIMOD_bisANS_sulfonates
bisANS-sulfonates: BisANS with loss of both sulfonates.
Definition: cv.hpp:9272
UO_mass_unit
mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object...
Definition: cv.hpp:9305
MS_MAT95XP
MAT95XP: ThermoFinnigan MAT95XP MS.
Definition: cv.hpp:725
MS_ProteomeDiscoverer_WinCyg_reference_database
ProteomeDiscoverer:WinCyg reference database: Windows full path for database.
Definition: cv.hpp:5468
MS_prot_global_FDR
prot:global FDR: Estimation of global false discovery rate of the proteins.
Definition: cv.hpp:3911
MS_Sequest_sort_by_Sp
Sequest:sort_by_Sp:
Definition: cv.hpp:3518
UNIMOD_Delta_H_5_C_2_
Delta:H(5)C(2): Dimethylation of proline residue.
Definition: cv.hpp:7451
MS_no_cleavage
no cleavage: No cleavage.
Definition: cv.hpp:6119
MS_Synapt_G2_HDMS
Synapt G2 HDMS: Waters oa-ToF based.
Definition: cv.hpp:5579
MS_Sequest_consensus_score
Sequest:consensus score: The SEQUEST result &#39;Consensus Score&#39;.
Definition: cv.hpp:3788
MS_ProteomeDiscoverer_Mascot_Peptide_CutOff_Score
ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptid...
Definition: cv.hpp:5222
UNIMOD_ExacTagAmine
ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.
Definition: cv.hpp:7970
UNIMOD_Tyr__Pro
Tyr-&gt;Pro: Tyr-&gt;Pro substitution.
Definition: cv.hpp:9074
UNIMOD_Fluorescein
Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).
Definition: cv.hpp:6698
UO_week
week: A time unit which is equal to 7 days.
Definition: cv.hpp:9401
MS_mass_analyzer
mass analyzer: Terms used to describe the Analyzer.
Definition: cv.hpp:1778
UNIMOD_HNE_Delta_H_2_O
HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.
Definition: cv.hpp:7916
MS_spectrum_representation
spectrum representation: Way in which the spectrum is represented, either with regularly spaced data ...
Definition: cv.hpp:2021
MS_ionization_type
ionization type: The method by which gas phase ions are generated from the sample.
Definition: cv.hpp:116
MS_Phenyx_Trust_Parent_Charge
Phenyx:Trust Parent Charge:
Definition: cv.hpp:4376
UNIMOD_thioacylPA
thioacylPA: Membrane protein extraction.
Definition: cv.hpp:8312
MS_surface_assisted_laser_desorption_ionization
surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are...
Definition: cv.hpp:1628
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_
Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.
Definition: cv.hpp:6752
MS_ProteinExtractor_Methodname
ProteinExtractor:Methodname:
Definition: cv.hpp:4505
MS_ion_molecule_reaction
ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction...
Definition: cv.hpp:1697
MS_spControl
spControl: Bruker software for data acquisition.
Definition: cv.hpp:2720
UO_volume_per_unit_volume
volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solu...
Definition: cv.hpp:9908
UO_ratio
ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another...
Definition: cv.hpp:9863
MS_AB_SCIEX_TOF_TOF_T2D_nativeID_format
AB SCIEX TOF/TOF T2D nativeID format: file=xsd:IDREF.
Definition: cv.hpp:4910
UNIMOD_Quinone
Quinone: Quinone.
Definition: cv.hpp:7181
UO_radiance_unit
radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through s...
Definition: cv.hpp:9776
MS_IRMS
IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different iso...
Definition: cv.hpp:1115
UNIMOD_Val__Ala
Val-&gt;Ala: Val-&gt;Ala substitution.
Definition: cv.hpp:7841
MS_heterolytic_cleavage
heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single b...
Definition: cv.hpp:1673
MS_Da_OBSOLETE
Da (dalton): A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1...
Definition: cv.hpp:857
MS_photodiode_array_detector
photodiode array detector: An array detector used to record spectra in the ultraviolet and visable re...
Definition: cv.hpp:2366
MS_laser_attribute
laser attribute: Laser properties that are associated with a value.
Definition: cv.hpp:3059
MS_spectrum_attribute
spectrum attribute: Spectrum properties that are associated with a value.
Definition: cv.hpp:1943
UNIMOD_Phe__Gln
Phe-&gt;Gln: Phe-&gt;Gln substitution.
Definition: cv.hpp:8648
MS_Mascot_Integra
Mascot Integra: Mascot Integra.
Definition: cv.hpp:4706
MS_isolation_window_attribute
isolation window attribute: Isolation window parameter.
Definition: cv.hpp:2903
MS_peak
peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often ...
Definition: cv.hpp:932
UNIMOD_LG_pyrrole
LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.
Definition: cv.hpp:8267
UNIMOD_Crotonaldehyde
Crotonaldehyde: Crotonaldehyde.
Definition: cv.hpp:6878
MS_DB_MW_filter_maximum
DB MW filter maximum:
Definition: cv.hpp:3878
UNIMOD_ICPL_13C_6_
ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.
Definition: cv.hpp:7115
MS_decoy_DB_from_IPI_mouse
decoy DB from IPI_mouse:
Definition: cv.hpp:4121
UNIMOD_Xle__Gly
Xle-&gt;Gly: Leu/Ile-&gt;Gly substitution.
Definition: cv.hpp:8735
MS_error_on_peptide_area
error on peptide area: Error on peptide area.
Definition: cv.hpp:3692
MS_database_file_formats
database file formats: The children of this term define file formats of the sequence database used...
Definition: cv.hpp:4283
UNIMOD_Chlorpyrifos
Chlorpyrifos: O,O-diethyl o-3,5,6-trichloro-2-pyridyl phosphorothioate.
Definition: cv.hpp:8324
MS_MS_GF_
MS-GF+: MS-GF+ software used to analyze the spectra.
Definition: cv.hpp:6422
MS_search_result_details_OBSOLETE
search result details: OBSOLETE: Scores and global result characteristics.
Definition: cv.hpp:3908
MS_MS1_spectrum
MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-sta...
Definition: cv.hpp:2189
MS_spectrum_quality_descriptions
spectrum quality descriptions: Description of the quality of the input spectrum.
Definition: cv.hpp:4313
UO_milligray
milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy...
Definition: cv.hpp:9722
UNIMOD_EGCG1
EGCG1: (-)-epigallocatechin-3-gallate.
Definition: cv.hpp:8381
MS_acquisition_parameter
acquisition parameter: Parameters used in the mass spectrometry acquisition.
Definition: cv.hpp:6116
MS_matrix_application_type
matrix application type: Describes the technique how the matrix is put on the sample target...
Definition: cv.hpp:3035
MS_dynamic_mass_spectrometry
dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fie...
Definition: cv.hpp:1319
UNIMOD_ICDID_2H_6_
ICDID:2H(6): Isotope-Coded Dimedone heavy form.
Definition: cv.hpp:8423
UNIMOD_Cys__Dha
Cys-&gt;Dha: Dehydroalanine (from Cysteine).
Definition: cv.hpp:7124
UNIMOD_Trp__Kynurenin
Trp-&gt;Kynurenin: Tryptophan oxidation to kynurenin.
Definition: cv.hpp:7085
UNIMOD_LG_Hlactam_R
LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.
Definition: cv.hpp:7409
MS_transmission
transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number e...
Definition: cv.hpp:953
UNIMOD_QTGG
QTGG: SUMOylation leaving GlnThrGlyGly.
Definition: cv.hpp:9194
MS_quantification_data_processing
quantification data processing: Terms used to describe types of quantification data processing...
Definition: cv.hpp:5831
MS_ACQUITY_UPLC_Systems_with_2D_Technology
ACQUITY UPLC Systems with 2D Technology: Waters LC-system.
Definition: cv.hpp:5543
MS_MzWiff
MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML fo...
Definition: cv.hpp:2264
UNIMOD_Thr__Glu
Thr-&gt;Glu: Thr-&gt;Glu substitution.
Definition: cv.hpp:8963
UNIMOD_Lys__Xle
Lys-&gt;Xle: Lys-&gt;Leu/Ile substitution.
Definition: cv.hpp:7643
MS_MassHunter_Qualitative_Analysis
MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments...
Definition: cv.hpp:2549
MS_64_bit_integer
64-bit integer: Signed 64-bit little-endian integer.
Definition: cv.hpp:2012
MS_selected_reaction_monitoring_spectrum
selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from s...
Definition: cv.hpp:2240
MS_reservoir
reservoir: A sample inlet method involving a reservoir.
Definition: cv.hpp:311
MS_mass_difference
mass difference (delta M): The difference between a theoretically calculated molecular mass M and the...
Definition: cv.hpp:6188
MS_SSMS_OBSOLETE
SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.
Definition: cv.hpp:1238
MS_unlabeled_peptide
unlabeled peptide: A peptide that has not been labeled with heavier-than-usual isotopes. This is often referred to as "light" to distinguish from "heavy".
Definition: cv.hpp:3218
MS_frag__d_ion
frag: d ion: Fragmentation information, type of product: d ion.
Definition: cv.hpp:3980
UNIMOD_Gln__Ser
Gln-&gt;Ser: Gln-&gt;Ser substitution.
Definition: cv.hpp:8900
UNIMOD_PS_Hapten
PS_Hapten: Reaction with phenyl salicylate (PS).
Definition: cv.hpp:9296
MS_Auto_Spec_Ultima_NT
Auto Spec Ultima NT: Waters AutoSpec Ultima NT MS.
Definition: cv.hpp:650
MS_delayed_extraction
delayed extraction: The application of the accelerating voltage pulse after a time delay in desorptio...
Definition: cv.hpp:1010
MS_nth_generation_product_ion_scan
nth generation product ion scan: The specific scan functions or processes that record the appropriate...
Definition: cv.hpp:1424
UO_gram_per_deciliter
gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the v...
Definition: cv.hpp:9917
MS_first_author
first author: The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution.
Definition: cv.hpp:6377
UO_radiant_intensity_unit
radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiat...
Definition: cv.hpp:9770
UO_electric_charge
electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a bo...
Definition: cv.hpp:9950
MS_measurement_method
measurement method: An attribute of resolution when recording the detector response in absence of the...
Definition: cv.hpp:2282
MS_electron_ionization
electron ionization: The ionization of an atom or molecule by electrons that are typically accelerate...
Definition: cv.hpp:1580
UNIMOD_NEIAA
NEIAA: N-ethyl iodoacetamide-d0.
Definition: cv.hpp:6863
MS_ASN_1
ASN.1: The sequence database was stored in the ASN.1 format.
Definition: cv.hpp:4289
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Charge_Reduced_Precursor
ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge...
Definition: cv.hpp:5120
UO_becquerel
becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radio...
Definition: cv.hpp:9692
UNIMOD_Tyr__Arg
Tyr-&gt;Arg: Tyr-&gt;Arg substitution.
Definition: cv.hpp:9080
std::string URI
the URI for the resource.
Definition: cv.hpp:10162
UNIMOD_Phe__CamCys
Phe-&gt;CamCys: Phe-&gt;Cys substitution and carbamidomethylation.
Definition: cv.hpp:8183
UNIMOD_Saligenin
Saligenin: O-toluene.
Definition: cv.hpp:9110
UNIMOD_Phytochromobilin
Phytochromobilin: Phytochromobilin.
Definition: cv.hpp:7172
MS_ProteomeDiscoverer_phosphoRS_sequence_probability
ProteomeDiscoverer:phosphoRS sequence probability: Probability that the respective isoform is correct...
Definition: cv.hpp:6164
MS_source_interface_manufacturer
source interface manufacturer: The source interface manufacturer.
Definition: cv.hpp:6113
MS_time_of_flight
time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a ...
Definition: cv.hpp:392
MS_number_of_matched_peaks
number of matched peaks: The number of peaks that were matched as qualified by the ion series conside...
Definition: cv.hpp:3662
MS_nitrogen_rule
nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nomin...
Definition: cv.hpp:923
MS_ProteomeDiscoverer_Protein_Relevance_Threshold
ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether...
Definition: cv.hpp:5291
MS_merge_of_runs_of_1D_gel_bands
merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group...
Definition: cv.hpp:5720
UO_month
month: A time unit which is approximately equal to the length of time of one of cycle of the moon&#39;s p...
Definition: cv.hpp:9404
MS_LC_MS_label_free_quantitation_analysis
LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).
Definition: cv.hpp:5750
UNIMOD_Benzoyl
Benzoyl: Labeling reagent light form (N-term &amp; K).
Definition: cv.hpp:6716
UO_lumen
lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point s...
Definition: cv.hpp:9653
MS_ProteinExtractor_PhenyxPeptideScoreThreshold
ProteinExtractor:PhenyxPeptideScoreThreshold:
Definition: cv.hpp:4565
MS_Phenyx_Score
Phenyx:Score:
Definition: cv.hpp:4412
UNIMOD_Glu__Val
Glu-&gt;Val: Glu-&gt;Val substitution.
Definition: cv.hpp:7559
MS_ProteinExtractor_SequestWeighting
ProteinExtractor:SequestWeighting:
Definition: cv.hpp:4547
UO_watt_per_steradian
watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second ...
Definition: cv.hpp:9779
MS_sample_volume
sample volume: Total volume of solution used.
Definition: cv.hpp:107
UNIMOD_Hex_1_HexNAc_2_Pent_1_
Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.
Definition: cv.hpp:6758
UNIMOD_Thiophospho
Thiophospho: Thiophosphorylation.
Definition: cv.hpp:6896
UO_confluence_percentage
confluence percentage: A dimensionless percent unit which denotes the density of an attached or monol...
Definition: cv.hpp:9875
MS_modification_motif
modification motif: The regular expression describing the sequence motif for a modification.
Definition: cv.hpp:5873
MS_param__x_ion
param: x ion:
Definition: cv.hpp:4049
MS_scan_window_lower_limit
scan window lower limit: The upper m/z bound of a mass spectrometer scan window.
Definition: cv.hpp:1949
MS_peptide_attribute
peptide attribute: An nonphysical attribute that can be used to describe a peptide.
Definition: cv.hpp:3203
UO_half_life
half life: A time unit which represents the period over which the activity or concentration of a spec...
Definition: cv.hpp:9749
UNIMOD_Delta_H_4_C_6_
Delta:H(4)C(6): Acrolein addition +76.
Definition: cv.hpp:6857
MS_conversion_dynode_photomultiplier
conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce ele...
Definition: cv.hpp:479
UNIMOD_Gln__Tyr
Gln-&gt;Tyr: Gln-&gt;Tyr substitution.
Definition: cv.hpp:8912
UNIMOD_Xle__Lys
Xle-&gt;Lys: Leu/Ile-&gt;Lys substitution.
Definition: cv.hpp:7622
MS_param__a_ion
param: a ion:
Definition: cv.hpp:3623
UO_microampere
microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6]...
Definition: cv.hpp:9413
UNIMOD_NeuAc
NeuAc: N-acetyl neuraminic acid.
Definition: cv.hpp:9218
UNIMOD_Tyr__Trp
Tyr-&gt;Trp: Tyr-&gt;Trp substitution.
Definition: cv.hpp:9089
MS_Agilent_MassHunter_file
Agilent MassHunter file: A data file found in an Agilent MassHunter directory which contains raw data...
Definition: cv.hpp:4766
UNIMOD_Label_13C_6_15N_4__Methyl_2H_3_13C_1_
Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).
Definition: cv.hpp:8393
UNIMOD_Xlink_SMCC
Xlink:SMCC: Monolink of sulfoSMCC/SMCC crosslinker to Cys.
Definition: cv.hpp:8438
MS_Phenyx_Instrument_Type
Phenyx:Instrument Type:
Definition: cv.hpp:4367
MS______BDEZ_____P_
(?&lt;=[BDEZ])(?!P):
Definition: cv.hpp:4262
MS_search_engine_specific_score_for_peptides
search engine specific score for peptides:
Definition: cv.hpp:3728
MS_conversion_dynode_electron_multiplier
conversion dynode electron multiplier: A surface that is held at high potential so that ions striking...
Definition: cv.hpp:476
UNIMOD_Xle__Phe
Xle-&gt;Phe: Leu/Ile-&gt;Phe substitution.
Definition: cv.hpp:7649
MS_ProteomeDiscoverer_Absolute_XCorr_Threshold
ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whet...
Definition: cv.hpp:5252
MS_label_free_proteingroup_level_quantitation
label-free proteingroup level quantitation: Label-free proteingroup level quantitation.
Definition: cv.hpp:6341
MS_PROTEINEER
PROTEINEER: Bruker PROTEINEER software.
Definition: cv.hpp:2696
UNIMOD_BITC
BITC: Benzyl isothiocyanate.
Definition: cv.hpp:8330
MS_TWIMS
TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique b...
Definition: cv.hpp:5639
MS_ETD
ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing f...
Definition: cv.hpp:2291
MS_FeatureList_attribute
FeatureList attribute: Attribute describing a FeatureList.
Definition: cv.hpp:5723
MS_ProteinExtractor_UsePhenyx
ProteinExtractor:UsePhenyx:
Definition: cv.hpp:4562
MS_Velos_Plus
Velos Plus: Thermo Scientific second generation Velos.
Definition: cv.hpp:5975
MS_thermal_ionization
thermal ionization: The ionization of a neutral species through contact with a high temperature surfa...
Definition: cv.hpp:1634
UNIMOD_DEDGFLYMVYASQETFG
DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.
Definition: cv.hpp:8405
MS_glow_discharge_ionization
glow discharge ionization: The formation of ions in the gas phase and from solid samples at the catho...
Definition: cv.hpp:1088
UNIMOD_Pro__Arg
Pro-&gt;Arg: Pro-&gt;Arg substitution.
Definition: cv.hpp:7724
MS_confident_peptide_qualification
confident peptide qualification: The point of this entry is to define what is meant by confident for ...
Definition: cv.hpp:3596
UO_milligram
milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
Definition: cv.hpp:9365
UNIMOD_Hex_1_HexNAc_2_dHex_1_Pent_1_
Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.
Definition: cv.hpp:6770
UO_picosecond
picosecond: A time unit which is equal to 10^[-12] s.
Definition: cv.hpp:9389
MS_Sequest_sort_by_Ref
Sequest:sort_by_Ref:
Definition: cv.hpp:3485
UO_parts_per_thousand
parts per thousand: A dimensionless concentration notation which denotes the amount of a given substa...
Definition: cv.hpp:9797
MS_search_engine_specific_input_parameter
search engine specific input parameter: This branch contains search engine specific input parameters ...
Definition: cv.hpp:4148
MS_ionizing_collision
ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are ...
Definition: cv.hpp:1694
UNIMOD_Ethanolyl
Ethanolyl: Ethanolation.
Definition: cv.hpp:6935
UNIMOD_Pro__Tyr
Pro-&gt;Tyr: Pro-&gt;Tyr substitution.
Definition: cv.hpp:8876
MS_frag__precursor_ion___NH3
frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia...
Definition: cv.hpp:4805
MS_ProteomeDiscoverer_Organism_OBSOLETE
ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).
Definition: cv.hpp:5450
UO_degree_fahrenheit
degree fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahre...
Definition: cv.hpp:9878
UNIMOD_Ser__Asp
Ser-&gt;Asp: Ser-&gt;Asp substitution.
Definition: cv.hpp:8936
MS_reporter_ion_intensity
reporter ion intensity: Intensity of MS/MS reporter ion (e.g. iTraq).
Definition: cv.hpp:5789
MS_autoflex_III_smartbeam
autoflex III smartbeam: Bruker Daltonics&#39; autoflex III smartbeam: MALDI TOF.
Definition: cv.hpp:2597
MS_sequence_coverage
sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can...
Definition: cv.hpp:3578
UNIMOD_Asn__Val
Asn-&gt;Val: Asn-&gt;Val substitution.
Definition: cv.hpp:8840
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5387
MS_unmodified_peptide_sequence
unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that comp...
Definition: cv.hpp:3206
UNIMOD_Cys__Asn
Cys-&gt;Asn: Cys-&gt;Asn substitution.
Definition: cv.hpp:8537
UNIMOD_Gly__Trp
Gly-&gt;Trp: Gly-&gt;Trp substitution.
Definition: cv.hpp:7583
MS_Shimadzu_Scientific_Instruments_instrument_model
Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model...
Definition: cv.hpp:2309
MS_SpectraST_discriminant_score_F
SpectraST:discriminant score F: SpectraST spectrum score.
Definition: cv.hpp:4490
UNIMOD_Hex_1_HexNAc_2_
Hex(1)HexNAc(2): Hex1HexNAc2.
Definition: cv.hpp:6749
UNIMOD_ICPL
ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.
Definition: cv.hpp:7118
UO_femtogram
femtogram: A mass unit which is equal to 10^[-15] g.
Definition: cv.hpp:9377
UNIMOD_Thr__Ser
Thr-&gt;Ser: Thr-&gt;Ser substitution.
Definition: cv.hpp:7814
MS_TagRecon_MVH
TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divi...
Definition: cv.hpp:5009
UNIMOD_Tyr__Gly
Tyr-&gt;Gly: Tyr-&gt;Gly substitution.
Definition: cv.hpp:9065
MS_decoy_DB_from_IPI_arabidopsis
decoy DB from IPI_arabidopsis:
Definition: cv.hpp:4124
UO_year
year: A time unit which is equal to 12 months which is science is taken to be equal to 365...
Definition: cv.hpp:9407
MS_emission_spectrum
emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or ...
Definition: cv.hpp:2951
MS_Sequest_CleavesAt
Sequest:CleavesAt:
Definition: cv.hpp:3356
MS_CRM_chromatogram_OBSOLETE
CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an ...
Definition: cv.hpp:4661
MS_source_potential
source potential: Potential difference at the MS source in volts.
Definition: cv.hpp:1898
UO_volume_unit
volume unit: A unit which is a standard measure of the amount of space occupied by any substance...
Definition: cv.hpp:9584
MS_convex_hull_baseline_reduction
convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum...
Definition: cv.hpp:6245
MS_Sequest_Fast
Sequest:Fast:
Definition: cv.hpp:3677
UNIMOD_Hex_1_HexNAc_1_dHex_1_
Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.
Definition: cv.hpp:6743
MS_SRM_quantitation_analysis
SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quant. of precursor / fragment ...
Definition: cv.hpp:5762
MS_____K____P_
(?&lt;=K)(?!P):
Definition: cv.hpp:4247
MS_pepXML_file
pepXML file: Source file for this mzIdentML was a pepXML file.
Definition: cv.hpp:4496
UO_millicurie
millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-...
Definition: cv.hpp:9731
MS_MS2_tag_based_proteingroup_level_quantitation
MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.
Definition: cv.hpp:6356
UNIMOD_Biotin_Thermo_21360
Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.
Definition: cv.hpp:8051
UNIMOD_His__Cys
His-&gt;Cys: His-&gt;Cys substitution.
Definition: cv.hpp:8693
std::vector< std::string > exactSynonyms
Definition: cv.hpp:10196
MS_AB_SCIEX_software
AB SCIEX software: AB SCIEX or Applied Biosystems software for data acquisition and analysis...
Definition: cv.hpp:2579
MS_SymBiot_XVI
SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.
Definition: cv.hpp:785
MS_ProteomeDiscoverer_Activation_Type_OBSOLETE
ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any).
Definition: cv.hpp:5060
MS_mass_table_source
mass table source: Children of this term specify the source of the mass table used.
Definition: cv.hpp:4277
MS_database_EST
database EST:
Definition: cv.hpp:3833
MS_BioTOF_II
BioTOF II: Bruker Daltonics&#39; BioTOF II: ESI TOF.
Definition: cv.hpp:653
MS_energy_unit_OBSOLETE
energy unit: Energy units are represented in either eV or Joules.
Definition: cv.hpp:245
UNIMOD_Hex_2_HexNAc_2_
Hex(2)HexNAc(2): Hex2HexNAc2.
Definition: cv.hpp:6764
MS_MaRiMba_OBSOLETE
MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on o...
Definition: cv.hpp:3320
UNIMOD_Arg__His
Arg-&gt;His: Arg-&gt;His substitution.
Definition: cv.hpp:7763
MS_resonance_enhanced_multiphoton_ionization
resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross secti...
Definition: cv.hpp:1193
MS_mass_number
mass number: The sum of the protons and neutrons in an atom, molecule or ion.
Definition: cv.hpp:902
MS_low_intensity_data_point_removal
low intensity data point removal: The removal of very low intensity data points that are likely to be...
Definition: cv.hpp:2273
MS_spectrum_same_set_protein
spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein...
Definition: cv.hpp:5033
MS_number_of_unmatched_peaks
number of unmatched peaks: The number of unmatched peaks.
Definition: cv.hpp:4328
UNIMOD_Microcin
Microcin: Microcin E492 siderophore ester from serine.
Definition: cv.hpp:7325
MS_Ascore_Ascore
Ascore:Ascore: The Ascore score value from Ascore software.
Definition: cv.hpp:6215
MS_OMSSA_xml_file
OMSSA xml file: Source file for this mzIdentML was an OMSSA xml file.
Definition: cv.hpp:4442
UNIMOD_Phosphoguanosine
Phosphoguanosine: Phospho-guanosine.
Definition: cv.hpp:7235
MS_search_input_details
search input details:
Definition: cv.hpp:4013
UNIMOD_Gln__Gly
Gln-&gt;Gly: Gln-&gt;Gly substitution.
Definition: cv.hpp:8891
MS______FL__
(?&lt;=[FL]):
Definition: cv.hpp:4253
MS_gene_name
gene name: Name of the gene from which the protein is translated.
Definition: cv.hpp:3350
MS_sector_mass_spectrometer
sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z sele...
Definition: cv.hpp:1304
MS_sample_state
sample state: The chemical phase of a pure sample, or the state of a mixed sample.
Definition: cv.hpp:101
MS_inlet_temperature
inlet temperature: The temperature of the inlet of a mass spectrometer.
Definition: cv.hpp:6398
MS_ProteomeDiscoverer_SEQUEST_NTerminal_Modification
ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used durin...
Definition: cv.hpp:5279
UNIMOD_Thr__Asn
Thr-&gt;Asn: Thr-&gt;Asn substitution.
Definition: cv.hpp:7820
UNIMOD_Bodipy
Bodipy: Bodipy modifications onto cysteine.
Definition: cv.hpp:8126
MS_quantile_normalization__proteins
quantile normalization, proteins: Normalization of protein values to approach the same distribution...
Definition: cv.hpp:5837
MS_eight_sample_run
eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).
Definition: cv.hpp:5714
UO_millimetres_of_mercury
millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep ...
Definition: cv.hpp:10109
MS_ProteomeDiscoverer_1__Dynamic_Modification
ProteomeDiscoverer:1. Dynamic Modification: Determine 1st dynamic post-translational modifications (P...
Definition: cv.hpp:5408
UO_derived_unit_OBSOLETE
derived unit: A unit which is derived from base units.
Definition: cv.hpp:9437
MS_DataAnalysis
DataAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2666
MS_liquid
liquid: State if the sample is in liquid form.
Definition: cv.hpp:254
UNIMOD_DMPO
DMPO: DMPO spin-trap nitrone adduct.
Definition: cv.hpp:8417
MS_esquire_4000
esquire 4000: Bruker Daltonics&#39; esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
Definition: cv.hpp:668
UNIMOD_Sulfo_NHS_LC_LC_Biotin
Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.
Definition: cv.hpp:7439
MS_FASTA_format
FASTA format: The sequence database was stored in the FASTA format.
Definition: cv.hpp:4286
UO_lux
lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an ...
Definition: cv.hpp:9647
MS_isolation_window_target_m_z
isolation window target m/z: The primary or reference m/z about which the isolation window is defined...
Definition: cv.hpp:3020
UO_katal_per_cubic_meter
katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity o...
Definition: cv.hpp:9902
UNIMOD_Cation_Na
Cation:Na: Sodium adduct.
Definition: cv.hpp:6521
MS_LCQ_Advantage
LCQ Advantage: ThermoFinnigan LCQ Advantage MS.
Definition: cv.hpp:701
UNIMOD_Succinyl_13C_4_
Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term &amp; K...
Definition: cv.hpp:6617
MS_moving_belt
moving belt: Continuous moving surface in the form of a belt which passes through an ionsource carryi...
Definition: cv.hpp:299
MS_label_free_peptide_level_quantitation
label-free peptide level quantitation: Label-free peptide level quantitation.
Definition: cv.hpp:6335
UNIMOD_BADGE
BADGE: Bisphenol A diglycidyl ether derivative.
Definition: cv.hpp:7379
UNIMOD_Hex_3_
Hex(3): Hex3.
Definition: cv.hpp:6737
MS_molecule
molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of ...
Definition: cv.hpp:3113
UNIMOD_Gly__Glu
Gly-&gt;Glu: Gly-&gt;Glu substitution.
Definition: cv.hpp:7586
UNIMOD_Thiadiazole
Thiadiazole: Thiadiazolydation of Cys.
Definition: cv.hpp:8459
MS_Progenesis_normalization
Progenesis normalization: Normalization as performed by Progenesis LC-MS.
Definition: cv.hpp:5849
UNIMOD_Asn__Ser
Asn-&gt;Ser: Asn-&gt;Ser substitution.
Definition: cv.hpp:7688
MS_BioTOF_III
BioTOF III: Bruker Daltonics&#39; BioTOF III: ESI TOF.
Definition: cv.hpp:4853
UNIMOD_Ala__Met
Ala-&gt;Met: Ala-&gt;Met substitution.
Definition: cv.hpp:8498
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Overtones
ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overt...
Definition: cv.hpp:5129
MS_paul_ion_trap_OBSOLETE
paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage...
Definition: cv.hpp:1292
MS______FYWLKR_____P_
(?&lt;=[FYWLKR])(?!P):
Definition: cv.hpp:4256
MS_frag__x_ion
frag: x ion: Fragmentation information, type of product: x ion.
Definition: cv.hpp:3956
MS_suface_ionization_OBSOLETE
suface ionization: The ionization of a neutral species when it interacts with a solid surface with an...
Definition: cv.hpp:1217
MS_Laser_Ionization_MERGE_OBSOLETE
Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser w...
Definition: cv.hpp:1133
UO_electric_current_unit
electric current unit: A unit which is a standard measure of the flow of electric charge...
Definition: cv.hpp:9311
#define PWIZ_API_DECL
Definition: Export.hpp:32
UNIMOD_TAMRA_FP
TAMRA-FP: TAMRA fluorophosphonate modification of serine.
Definition: cv.hpp:8468
MS_HCT
HCT: Bruker Daltonics&#39; HCT: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:680
UNIMOD_Trp__Tyr
Trp-&gt;Tyr: Trp-&gt;Tyr substitution.
Definition: cv.hpp:9056
UNIMOD_Trp__Glu
Trp-&gt;Glu: Trp-&gt;Glu substitution.
Definition: cv.hpp:9026
MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE
consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measur...
Definition: cv.hpp:4658
MS_6320_Ion_Trap_LC_MS
6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1859
UNIMOD_Asn__Tyr
Asn-&gt;Tyr: Asn-&gt;Tyr substitution.
Definition: cv.hpp:7697
MS_PubMed_identifier
PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).
Definition: cv.hpp:3179
MS_unstable_ion
unstable ion: An ion with sufficient enerrgy to dissociate within the ion source. ...
Definition: cv.hpp:1550
MS_n_terminal_flanking_residue
n-terminal flanking residue: The residue preceeding the first amino acid in the peptide sequence as i...
Definition: cv.hpp:3635
UNIMOD_Label_2H_4_
Label:2H(4): 4,4,5,5-D4 Lysine.
Definition: cv.hpp:7370
UNIMOD_Thr__Gln
Thr-&gt;Gln: Thr-&gt;Gln substitution.
Definition: cv.hpp:8975
MS_Voyager_Biospectrometry_Workstation_System
Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysi...
Definition: cv.hpp:2066
MS_PolarisQ
PolarisQ: ThermoFinnigan PolarisQ MS.
Definition: cv.hpp:755
MS_Trypsin_P
Trypsin/P:
Definition: cv.hpp:4184
UNIMOD_Cys__ethylaminoAla
Cys-&gt;ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of e...
Definition: cv.hpp:8249
MS_file_format_conversion
file format conversion: Conversion of one file format to another.
Definition: cv.hpp:2036
MS_percent_of_base_peak_times_100
percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the m...
Definition: cv.hpp:3260
UNIMOD_Xlink_DMP
Xlink:DMP: Both ends of crosslink attached to same peptide.
Definition: cv.hpp:7349
MS_MS_GF_QValue
MS-GF:QValue: MS-GF Q-value.
Definition: cv.hpp:6440
MS_TODOscoring_model_OBSOLETE
TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed gr...
Definition: cv.hpp:3512
MS_param__c_ion
param: c ion:
Definition: cv.hpp:3656
MS_param__internal_ya_ion
param: internal ya ion:
Definition: cv.hpp:4454
MS_chromatogram_title
chromatogram title: A free-form text title describing a chromatogram.
Definition: cv.hpp:2963
UO_nanogram
nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g...
Definition: cv.hpp:9371
MS_Bruker_Daltonics_apex_series
Bruker Daltonics apex series:
Definition: cv.hpp:4901
MS_FA
FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that car...
Definition: cv.hpp:1067
MS_selected_ion_monitoring_spectrum
selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spect...
Definition: cv.hpp:2228
UNIMOD_Met__Lys
Met-&gt;Lys: Met-&gt;Lys substitution.
Definition: cv.hpp:7679
UNIMOD_EGCG2
EGCG2: (-)-dehydroepigallocatechin.
Definition: cv.hpp:8384
id_list parentsPartOf
Definition: cv.hpp:10194
UNIMOD_Met__His
Met-&gt;His: Met-&gt;His substitution.
Definition: cv.hpp:8792
MS_Paul_Ion_trap
Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three d...
Definition: cv.hpp:380
MS_ionization_energy
ionization energy: The minimum energy required to remove an electron from an atom or molecule to prod...
Definition: cv.hpp:884
MS_ProteomeDiscoverer_Xtract_Lowest_Charge
ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of...
Definition: cv.hpp:5153
MS_ten_percent_valley
ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the ...
Definition: cv.hpp:407
UNIMOD_dHex_1_Hex_5_HexNAc_4_
dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.
Definition: cv.hpp:6998
UNIMOD_Phe__Ala
Phe-&gt;Ala: Phe-&gt;Ala substitution.
Definition: cv.hpp:8621
MS_MSn
MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by pr...
Definition: cv.hpp:1160
UNIMOD_Menadione
Menadione: Menadione quinone derivative.
Definition: cv.hpp:6986
MS_Sequest_expectation_value
Sequest:expectation value: The SEQUEST result &#39;Expectation value&#39;.
Definition: cv.hpp:3776
UNIMOD_Met__Xle
Met-&gt;Xle: Met-&gt;Leu/Ile substitution.
Definition: cv.hpp:7682
MS_source_sprayer_manufacturer
source sprayer manufacturer: The source sprayer manufacturer.
Definition: cv.hpp:6056
UO_effective_dose_unit
effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that...
Definition: cv.hpp:10073
MS_sum_peak_picking
sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to conv...
Definition: cv.hpp:2933
MS_SRM_software
SRM software: Software used to predict, select, or optimize transitions or analyze the results of sel...
Definition: cv.hpp:3155
MS_wavelet_transformation_smoothing
wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transf...
Definition: cv.hpp:6251
MS_S_lens_voltage
S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide i...
Definition: cv.hpp:5987
MS_param__w_ion
param: w ion:
Definition: cv.hpp:4046
UNIMOD_Ser__Asn
Ser-&gt;Asn: Ser-&gt;Asn substitution.
Definition: cv.hpp:7793
UNIMOD_Hex_4_HexNAc_4_
Hex(4)HexNAc(4): Biantennary (-1 galactose).
Definition: cv.hpp:7004
MS_original_nucleic_acid_sequence
original nucleic acid sequence: Original nucleic acid sequence before a nucleic acid base modificatio...
Definition: cv.hpp:6362
UNIMOD_Delta_Hg_1_
Delta:Hg(1): Mercury Mercaptan.
Definition: cv.hpp:6962
MS_resolution_measurement_method
resolution measurement method: Which of the available standard measures is used to define whether two...
Definition: cv.hpp:128
UNIMOD_CyDye_Cy3
CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.
Definition: cv.hpp:7382
MS_MassHunter_Mass_Profiler
MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS d...
Definition: cv.hpp:2564
MS_surface_induced_reaction
surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either...
Definition: cv.hpp:1739
UNIMOD_Trp__Thr
Trp-&gt;Thr: Trp-&gt;Thr substitution.
Definition: cv.hpp:9050
MS_BIRD
BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation...
Definition: cv.hpp:989
UNIMOD_Arg__Thr
Arg-&gt;Thr: Arg-&gt;Thr substitution.
Definition: cv.hpp:7754
MS_precursor_neutral_loss
precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion...
Definition: cv.hpp:4814
MS_Sequest_TIC
Sequest:TIC:
Definition: cv.hpp:4361
MS_single_reaction_monitoring_OBSOLETE
single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
Definition: cv.hpp:458
MS_data_file_checksum_type
data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrit...
Definition: cv.hpp:2132
MS_dye_laser
dye-laser: Dye lasers use an organic dye as the gain medium.
Definition: cv.hpp:3092
MS_mass_spectrometry_mass_spectrometry
mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged p...
Definition: cv.hpp:1151
UNIMOD_EQIGG
EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.
Definition: cv.hpp:8084
MS_Progenesis_LC_MS
Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow. ...
Definition: cv.hpp:5738
MS_frag__z_ion___H2O
frag: z ion - H2O: Fragmentation information, type of product: z ion without water.
Definition: cv.hpp:4790
UO_concentration_unit
concentration unit: A unit which represents a standard measurement of how much of a given substance t...
Definition: cv.hpp:9452
std::string name
Definition: cv.hpp:10188
MS_decoy_DB_from_IPI_chicken
decoy DB from IPI_chicken:
Definition: cv.hpp:4136
MS_amaZon_X
amaZon X: Bruker Daltonics&#39; amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
Definition: cv.hpp:4877
MS_1200_series_LC_MSD_SL
1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap fami...
Definition: cv.hpp:1838
MS_____R____P_
(?&lt;=R)(?!P):
Definition: cv.hpp:4076
MS_LTQ_XL_ETD
LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.
Definition: cv.hpp:2426
UNIMOD_Lys__Phe
Lys-&gt;Phe: Lys-&gt;Phe substitution.
Definition: cv.hpp:8750
MS_adduct_ion
adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an io...
Definition: cv.hpp:1472
MS_Sequest_TopNumber
Sequest:TopNumber: Specify "number" as value of the CVParam!
Definition: cv.hpp:3617
UNIMOD_Label_13C_8_15N_2_
Label:13C(8)15N(2): 13C(8) 15N(2) Silac label.
Definition: cv.hpp:8099
MS_maXis
maXis: Bruker Daltonics&#39; maXis: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:4862
UO_watt_per_steradian_per_square_meter
watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power inci...
Definition: cv.hpp:9767
MS_ProteinExtractor_Weighting
ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.
Definition: cv.hpp:6143
MS_q_value_for_proteins
q-value for proteins: Protein identification confidence metric q-value.
Definition: cv.hpp:5855
UNIMOD_DiLeu4plex118
DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.
Definition: cv.hpp:9260
UNIMOD_Diacylglycerol
Diacylglycerol: Diacylglycerol.
Definition: cv.hpp:7145
MS_database_IPI_cow
database IPI_cow:
Definition: cv.hpp:4109
UNIMOD_Cys__Thr
Cys-&gt;Thr: Cys-&gt;Thr substitution.
Definition: cv.hpp:8546
MS_intensity_unit
intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when usin...
Definition: cv.hpp:236
MS_ProteomeDiscoverer_Polarity_Mode_OBSOLETE
ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).
Definition: cv.hpp:5081
UO_dalton
dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the ...
Definition: cv.hpp:9956
MS_consecutive_reaction_monitoring_OBSOLETE
consecutive reaction monitoring: A type of MS/MS experiments with three or more stages of m/z separat...
Definition: cv.hpp:1391
UNIMOD_Thr__Arg
Thr-&gt;Arg: Thr-&gt;Arg substitution.
Definition: cv.hpp:7835
UO_millisievert
millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv...
Definition: cv.hpp:9710
UNIMOD_Val__His
Val-&gt;His: Val-&gt;His substitution.
Definition: cv.hpp:8990
UNIMOD_His__Gln
His-&gt;Gln: His-&gt;Gln substitution.
Definition: cv.hpp:7607
MS_ProteomeDiscoverer_SEQUEST_Peptide_Relevance_Factor
ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score...
Definition: cv.hpp:5288
MS_Q_TRAP
Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.
Definition: cv.hpp:761
MS_LTQ_FT
LTQ FT: Finnigan LTQ FT MS.
Definition: cv.hpp:1769
UNIMOD_Label_13C_6_15N_2__Dimethyl
Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.
Definition: cv.hpp:8348
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Polarity_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of th...
Definition: cv.hpp:5108
UO_kilogram_per_mole
kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical e...
Definition: cv.hpp:9560
UO_purity_percentage
purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial...
Definition: cv.hpp:9872
MS_MS_GF_PepQValue
MS-GF:PepQValue: MS-GF peptide-level Q-value.
Definition: cv.hpp:6443
MS_spectrum_generation_information
spectrum generation information: Vocabularies describing the spectrum generation information.
Definition: cv.hpp:4607
MS_basepeak_chromatogram
basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each ti...
Definition: cv.hpp:2396
MS_mass_type_settings
mass type settings: The type of mass difference value to be considered by the search engine (monoisot...
Definition: cv.hpp:3899
MS_peptide_sharing_details
peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this...
Definition: cv.hpp:3680
MS_molecular_beam_mass_spectrometry
molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced int...
Definition: cv.hpp:911
UNIMOD_Cys__Gly
Cys-&gt;Gly: Cys-&gt;Gly substitution.
Definition: cv.hpp:7520
MS_Lys_C
Lys-C:
Definition: cv.hpp:4172
UNIMOD_Gly__Gln
Gly-&gt;Gln: Gly-&gt;Gln substitution.
Definition: cv.hpp:8681
MS_retention_time_window_lower_offset
retention time window lower offset: The extent of the retention time window in time units below the t...
Definition: cv.hpp:3296
MS_nth_generation_product_ion_spectrum
nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments desig...
Definition: cv.hpp:2210
MS_1200_series_LC_MSD_VL
1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrom...
Definition: cv.hpp:1874
MS_microflex_LRF
microflex LRF: Bruker Daltonics&#39; microflex LRF: MALDI TOF.
Definition: cv.hpp:4868
MS_parameter_file
parameter file: Parameter file used to configure the acquisition of raw data on the instrument...
Definition: cv.hpp:2729
UO_percent
percent: A dimensionless ratio unit which denotes numbers as fractions of 100.
Definition: cv.hpp:9854
UNIMOD_Gln__Glu
Gln-&gt;Glu: Gln-&gt;Glu substitution.
Definition: cv.hpp:7736
UNIMOD_Asp__Glu
Asp-&gt;Glu: Asp-&gt;Glu substitution.
Definition: cv.hpp:7538
UNIMOD_Dimethyl
Dimethyl: Di-Methylation.
Definition: cv.hpp:6533
UNIMOD_mTRAQ
mTRAQ: MTRAQ light.
Definition: cv.hpp:8141
UO_disintegrations_per_minute
disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a ...
Definition: cv.hpp:9737
MS_electron_multiplier_tube
electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or...
Definition: cv.hpp:488
MS_ion_pair_formation
ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment ...
Definition: cv.hpp:1586
MS_overlayer_MALDI_sample_preparation
overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method...
Definition: cv.hpp:6230
MS_neutral_loss
neutral loss: The loss of an uncharged species during a rearrangement process.
Definition: cv.hpp:1418
MS_ProteomeDiscoverer_SEQUEST_Weight_of_x_Ions
ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative fac...
Definition: cv.hpp:5330
MS_Bruker_Daltonics_micrOTOF_series
Bruker Daltonics micrOTOF series:
Definition: cv.hpp:4847
MS_translation_table
translation table: The translation table used to translate the nucleotides to amino acids...
Definition: cv.hpp:3413
MS_LTQ_Orbitrap_XL
LTQ Orbitrap XL: LTQ Orbitrap XL.
Definition: cv.hpp:2117
MS_spectrum_from_database_integer_nativeID_format
spectrum from database integer nativeID format: databasekey=xsd:long.
Definition: cv.hpp:4817
UNIMOD_Arg__Xle
Arg-&gt;Xle: Arg-&gt;Leu/Ile substitution.
Definition: cv.hpp:7775
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr paramete...
Definition: cv.hpp:5360
MS_taxonomy__NCBI_TaxID
taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens...
Definition: cv.hpp:4631
MS_ProteomeDiscoverer_Spectrum_Exporter_Export_Format_OBSOLETE
ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta...
Definition: cv.hpp:5351
UO_microgram_per_milliliter
microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divid...
Definition: cv.hpp:10115
UNIMOD_Cation_K
Cation:K: Replacement of proton by potassium.
Definition: cv.hpp:7454
MS_Synapt_G2_S_MS
Synapt G2-S MS: Waters oa-ToF based.
Definition: cv.hpp:5588
UNIMOD_Label_13C_9__Phospho
Label:13C(9)+Phospho: C13 label (Phosphotyrosine).
Definition: cv.hpp:6812
UNIMOD_ICAT_H_13C_6_
ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.
Definition: cv.hpp:6689
MS_search_tolerance_plus_value
search tolerance plus value:
Definition: cv.hpp:4469
MS_ProteomeDiscoverer_Spectrum_Selector_Ionization_Source_OBSOLETE
ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc).
Definition: cv.hpp:5057
UNIMOD_PyMIC
PyMIC: 3-methyl-2-pyridyl isocyanate.
Definition: cv.hpp:7397
MS_instrument_model
instrument model: Instrument model name not including the vendor&#39;s name.
Definition: cv.hpp:188
UNIMOD_Delta_H_4_C_3_
Delta:H(4)C(3): Propionaldehyde +40.
Definition: cv.hpp:6887
MS_one_sample_run
one sample run: The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free).
Definition: cv.hpp:5702
MS_reflectron_on
reflectron on: Reflectron is on.
Definition: cv.hpp:467
UO_magnetic_flux_unit
magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of th...
Definition: cv.hpp:9968
MS_protein_rank
protein rank: The rank of the protein in a list sorted by the search engine.
Definition: cv.hpp:4145
MS_SID
SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a su...
Definition: cv.hpp:605
MS_6300_Series_Ion_Trap_Data_Analysis_Software
6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass ...
Definition: cv.hpp:2573
MS_instrument_configuration
instrument configuration (instrument): Description of the instrument or the mass spectrometer.
Definition: cv.hpp:1826
MS_additional_description
additional description: Terms to describe Additional.
Definition: cv.hpp:1817
MS_ion_mobility_spectrometry
ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas un...
Definition: cv.hpp:1100
MS_positive_ion_mode_OBSOLETE
positive ion mode: OBSOLETE.
Definition: cv.hpp:359
UNIMOD_Pro__Thr
Pro-&gt;Thr: Pro-&gt;Thr substitution.
Definition: cv.hpp:7721
UO_unit
unit: A unit of measurement is a standardized quantity of a physical quality.
Definition: cv.hpp:9299
UNIMOD_Biotin_Thermo_88310
Biotin:Thermo-88310: Desthiobiotin modification of lysine.
Definition: cv.hpp:8447
MS_alternating_OBSOLETE
alternating: Alternating.
Definition: cv.hpp:1835
UNIMOD_Atto495Maleimide
Atto495Maleimide: High molecular absorption maleimide label for proteins.
Definition: cv.hpp:8234
UNIMOD_PEITC
PEITC: Phenethyl isothiocyanate.
Definition: cv.hpp:8333
UNIMOD_Diisopropylphosphate
Diisopropylphosphate: O-Diisopropylphosphorylation.
Definition: cv.hpp:7109
MS_MS2_tag_based_protein_level_quantitation
MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.
Definition: cv.hpp:6353
UNIMOD_Diiodo
Diiodo: Di-Iodination.
Definition: cv.hpp:6704
MS_modification_specificity_rule
modification specificity rule: The specificity rules for the modifications applied by the search engi...
Definition: cv.hpp:3491
UNIMOD_Asp__Pro
Asp-&gt;Pro: Asp-&gt;Pro substitution.
Definition: cv.hpp:8567
UNIMOD_Glu__Xle
Glu-&gt;Xle: Glu-&gt;Leu/Ile substitution.
Definition: cv.hpp:8594
MS_micrOTOF_Q
micrOTOF-Q: Bruker Daltonics&#39; micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:2618
UNIMOD_Delta_H_2_C_3_
Delta:H(2)C(3): Acrolein addition +38.
Definition: cv.hpp:6854
MS_constant_neutral_loss_scan
constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement...
Definition: cv.hpp:1370
MS_offset_voltage
offset voltage: The potential difference between two adjacent interface voltages affecting in-source ...
Definition: cv.hpp:5885
MS_greylag
greylag: Greylag identification software, see greylag.org.
Definition: cv.hpp:4616
UNIMOD_HexN
HexN: Hexosamine.
Definition: cv.hpp:7343
UNIMOD_ICAT_H
ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.
Definition: cv.hpp:6686
MS_quantification_information
quantification information: Quantification information.
Definition: cv.hpp:3686
MS_source_interface
source interface: The source interface.
Definition: cv.hpp:6044
MS_charge_permutation_reaction
charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in...
Definition: cv.hpp:1658
MS_secondary_ionization
secondary ionization: The process in which ions are ejected from a sample surface as a result of bomb...
Definition: cv.hpp:1619
UNIMOD_Carboxymethyl
Carboxymethyl: Iodoacetic acid derivative.
Definition: cv.hpp:6467
MS_contact_organization
contact organization: Home institution of the contact person.
Definition: cv.hpp:2261
MS_ProteomeDiscoverer_Spectrum_Score_Filter_Let_Pass_Above_Scores
ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with score...
Definition: cv.hpp:5177
UO_kilobyte
kilobyte: An information unit which is equal to 1000 bytes.
Definition: cv.hpp:9995
MS_Sequest_CullTo
Sequest:CullTo: Specify cull string as value of the CVParam!
Definition: cv.hpp:3626
MS_Mascot_query_number
Mascot query number: query=xsd:nonNegativeInteger.
Definition: cv.hpp:4823
MS_DB_filter_on_sequence_pattern
DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern...
Definition: cv.hpp:3419
UO_femtomolar
femtomolar: A unit of molarity which is equal to 10^[-15] M.
Definition: cv.hpp:9518
MS_Bruker_Daltonics_amaZon_series
Bruker Daltonics amaZon series:
Definition: cv.hpp:4874
UNIMOD_Pro__Cys
Pro-&gt;Cys: Pro-&gt;Cys substitution.
Definition: cv.hpp:8846
UO_cubic_centimeter_per_mole
cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one m...
Definition: cv.hpp:9569
UNIMOD_Label_2H_4__Acetyl
Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.
Definition: cv.hpp:8072
UNIMOD_Gly__Phe
Gly-&gt;Phe: Gly-&gt;Phe substitution.
Definition: cv.hpp:8660
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Window_Tolerance
ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge...
Definition: cv.hpp:5345
MS_Phenyx_MinPepLength
Phenyx:MinPepLength:
Definition: cv.hpp:4391
UNIMOD_dHex_1_Hex_4_HexNAc_4_
dHex(1)Hex(4)HexNAc(4): Fucosylated biantennary (-1 galactose).
Definition: cv.hpp:6995
MS_Scaffold_Protein_Probability
Scaffold:Protein Probability: Scaffold protein probability score.
Definition: cv.hpp:4970
UNIMOD_TMT2plex
TMT2plex: Duplex Tandem Mass Tag®.
Definition: cv.hpp:7961
MS_Bruker_Daltonics_HCT_Series
Bruker Daltonics HCT Series: Bruker Daltonics HCT Series.
Definition: cv.hpp:2600
UNIMOD_Myristoyl
Myristoyl: Myristoylation.
Definition: cv.hpp:6557
MS_DB_filter_taxonomy
DB filter taxonomy: A taxonomy filter was to the database search.
Definition: cv.hpp:3398
UNIMOD_IED_Biotin
IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.
Definition: cv.hpp:6971
MS_laser_type
laser type: Type of laser used used for desorption purpose.
Definition: cv.hpp:3062
UNIMOD_Methyl_2H_3_13C_1_
Methyl:2H(3)13C(1): Monomethylated arginine.
Definition: cv.hpp:7043
MS_ProteomeDiscoverer_Mascot_Number_of_attempts_to_submit_the_search
ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the M...
Definition: cv.hpp:5198
MS_sum_of_spectra
sum of spectra: Spectra Sum.
Definition: cv.hpp:2162
MS_Sequest_sort_by_Sequence
Sequest:sort_by_Sequence:
Definition: cv.hpp:3527
UNIMOD_AccQTag
AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.
Definition: cv.hpp:6827
MS_accelerating_voltage
accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectr...
Definition: cv.hpp:1313
MS_flowing_afterglow
flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries ...
Definition: cv.hpp:1064
MS_DB_PI_filter_minimum
DB PI filter minimum:
Definition: cv.hpp:3887
MS_channeltron
channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
Definition: cv.hpp:470
UO_milliampere
milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3...
Definition: cv.hpp:9410
UO_base_pair
base pair: A count unit which contains one nucleotide.
Definition: cv.hpp:10025
UNIMOD_Label_13C_6_15N_4__Dimethyl_2H_6_13C_2_
Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).
Definition: cv.hpp:8396
MS_isolation_window_upper_limit_OBSOLETE
isolation window upper limit: The highest m/z being isolated in an isolation window.
Definition: cv.hpp:2906
UNIMOD_Ser__LacticAcid
Ser-&gt;LacticAcid: Lactic acid from N-term Ser.
Definition: cv.hpp:7211
MS_RGA
RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gass...
Definition: cv.hpp:1202
MS_odd_electron_rule
odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions...
Definition: cv.hpp:929
MS_interchannel_delay
interchannel delay: The duration of intervals between scanning, during which the instrument configura...
Definition: cv.hpp:3182
UO_degree
degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad...
Definition: cv.hpp:9848
MS_Mascot_homology_threshold
Mascot:homology threshold: The Mascot result &#39;homology threshold&#39;.
Definition: cv.hpp:4352
MS_FileFilter
FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files...
Definition: cv.hpp:2780
UO_rate_unit
rate unit: A unit which represents a standard measurement occurrence of a process per unit time...
Definition: cv.hpp:10133
UNIMOD_Label_13C_3_
Label:13C(3): 13C3 label for SILAC.
Definition: cv.hpp:9197
MS_time_digital_converter
time-digital converter: A device for converting a signal of sporadic pluses into a digital representa...
Definition: cv.hpp:524
UNIMOD_Thr__Gly
Thr-&gt;Gly: Thr-&gt;Gly substitution.
Definition: cv.hpp:8969
UNIMOD_Met__Aha
Met-&gt;Aha: Methionine replacement by azido homoalanine.
Definition: cv.hpp:8162
MS_experimental_condition__healthy_
experimental condition &#39;healthy&#39;: The experimental condition is &#39;healthy&#39; in contrast to &#39;disease&#39;...
Definition: cv.hpp:5687
MS_postacceleration_detector
postacceleration detector: A detector in which the charged particles are accelerated to a high veloci...
Definition: cv.hpp:1466
UNIMOD_Hex_5_HexNAc_2_
Hex(5)HexNAc(2): N-linked glycan core.
Definition: cv.hpp:6719
UO_dose_equivalent_unit
dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its bi...
Definition: cv.hpp:9686
UNIMOD_Pro__Ala
Pro-&gt;Ala: Pro-&gt;Ala substitution.
Definition: cv.hpp:7712
UO_dyne_per_cm
dyne per cm: A surface tension unit which is equal to one dyne per centimeter.
Definition: cv.hpp:10058
UNIMOD_NIC
NIC: Nicotinic Acid.
Definition: cv.hpp:7910
UNIMOD_biotinAcrolein298
biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.
Definition: cv.hpp:9239
UNIMOD_Cys__Met
Cys-&gt;Met: Cys-&gt;Met substitution.
Definition: cv.hpp:8534
MS_ProteomeDiscoverer_Use_Average_Precursor_Mass_OBSOLETE
ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.
Definition: cv.hpp:5246
MS_CS
CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the re...
Definition: cv.hpp:1007
MS_appearance_energy
appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a speci...
Definition: cv.hpp:836
MS_Sequest_DescriptionLines
Sequest:DescriptionLines:
Definition: cv.hpp:3365
MS_Sequest_out_folder
Sequest out folder: Source file for this mzIdentML was a Sequest folder with its out files...
Definition: cv.hpp:3998
MS_explorer
explorer: IonSpec Explorer MS.
Definition: cv.hpp:674
MS_MaxQuant_Phospho__STY__Score_Diffs
MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.
Definition: cv.hpp:6203
UNIMOD_Xle__Gln
Xle-&gt;Gln: Leu/Ile-&gt;Gln substitution.
Definition: cv.hpp:7664
UNIMOD_Met__Hse
Met-&gt;Hse: Homoserine.
Definition: cv.hpp:6479
UNIMOD_Delta_H_2_C_3_O_1_
Delta:H(2)C(3)O(1): MDA adduct +54.
Definition: cv.hpp:7025
MS_Tranche_project_hash
Tranche project hash: Hash assigned by the Tranche resource to a whole project.
Definition: cv.hpp:6035
MS_sample_preparation
sample preparation: Properties of the preparation steps which took place before the measurement was p...
Definition: cv.hpp:3029
MS_associative_ionization
associative ionization: An ionization process in which two excited atoms or molecules react to form a...
Definition: cv.hpp:1556
MS_StudyVariable_attribute
StudyVariable attribute: Attribute describing a study variable.
Definition: cv.hpp:5669
MS_NoiseFilter
NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.
Definition: cv.hpp:2795
MS_sample_number
sample number: A reference number relevant to the sample under study.
Definition: cv.hpp:95
UO_micromolar
micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M...
Definition: cv.hpp:9491
MS_Applied_Biosystems_software
Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis...
Definition: cv.hpp:2582
UO_plaque_forming_unit_per_volume
plaque forming unit per volume: A concentration unit which a measure of plague forming units in a giv...
Definition: cv.hpp:9935
MS_PeakPicker
PeakPicker: Finds mass spectrometric peaks in profile mass spectra.
Definition: cv.hpp:2798
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Mass_Analyzer_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spec...
Definition: cv.hpp:5102
UO_parts_per_trillion
parts per trillion: A dimensionless concentration notation which denotes the amount of a given substa...
Definition: cv.hpp:9806
UNIMOD_Ser__His
Ser-&gt;His: Ser-&gt;His substitution.
Definition: cv.hpp:8942
MS_database_IPI_mouse
database IPI_mouse:
Definition: cv.hpp:4097
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr para...
Definition: cv.hpp:5378
MS_MassHunter_Easy_Access
MassHunter Easy Access: Software for open access data acquisition.
Definition: cv.hpp:2546
MS_EMT
EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged partic...
Definition: cv.hpp:491
UNIMOD_PhosphoHexNAc
PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.
Definition: cv.hpp:7274
MS_16_bit_float_OBSOLETE
16-bit float: Signed 16-bit float.
Definition: cv.hpp:2006
UNIMOD_Lys__MetOx
Lys-&gt;MetOx: Lys-&gt;Met substitution and sulfoxidation.
Definition: cv.hpp:8189
UNIMOD_Xle__His
Xle-&gt;His: Leu/Ile-&gt;His substitution.
Definition: cv.hpp:7661
MS_decoy_DB_from_IPI_cow
decoy DB from IPI_cow:
Definition: cv.hpp:4139
MS_Progenesis_confidence_score
Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS...
Definition: cv.hpp:5930
UNIMOD_Gly_loss_Amide
Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.
Definition: cv.hpp:8057
MS_DB_composition_only_decoy
DB composition only decoy: Decoy database composition: database contains only decoy entries...
Definition: cv.hpp:4592
MS_fast_ion_bombardment
fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions havi...
Definition: cv.hpp:1760
UO_bit
bit: An information unit which refers to a digit in the binary numeral system, which consists of base...
Definition: cv.hpp:9989
MS_Electronic_Ionization_OBSOLETE
Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelera...
Definition: cv.hpp:332
UNIMOD_Trp__Val
Trp-&gt;Val: Trp-&gt;Val substitution.
Definition: cv.hpp:9053
MS_TIQAM
TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring ex...
Definition: cv.hpp:3317
UNIMOD_Phe__Cys
Phe-&gt;Cys: Phe-&gt;Cys substitution.
Definition: cv.hpp:7565
MS_frag__c_ion___H2O
frag: c ion - H2O: Fragmentation information, type of product: c ion without water.
Definition: cv.hpp:4784
MS_QTRAP_5500
QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.
Definition: cv.hpp:3341
UNIMOD_Label_13C_6_
Label:13C(6): 13C(6) Silac label.
Definition: cv.hpp:6821
MS_charge_array
charge array: A data array of charge values.
Definition: cv.hpp:1994
MS_decoy_SRM_transition
decoy SRM transition: A transition not expected to be present in the sample and used to calculate sta...
Definition: cv.hpp:6293
UO_nanogray
nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] ...
Definition: cv.hpp:9725
MS_data_processing_action
data processing action: Data processing attribute used to describe the type of data processing perfor...
Definition: cv.hpp:2078
MS_spectrum_type
spectrum type: Spectrum type.
Definition: cv.hpp:2126
MS_median_baseline_reduction
median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of ...
Definition: cv.hpp:6248
MS_preset_scan_configuration
preset scan configuration: A user-defined scan configuration that specifies the instrumental settings...
Definition: cv.hpp:2351
UO_enzyme_unit
enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the ...
Definition: cv.hpp:9836
UO_angstrom
angstrom: A length unit which is equal to 10 [-10] m.
Definition: cv.hpp:9356
UNIMOD_DimethylArsino
DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.
Definition: cv.hpp:8177
MS_DB_source_EBI
DB source EBI:
Definition: cv.hpp:4022
MS_proline_endopeptidase
proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).
Definition: cv.hpp:5996
MS_single_protein_result_details
single protein result details: Results specific for one protein as part of a protein ambiguity group ...
Definition: cv.hpp:3647
MS_ultraflex_TOF_TOF
ultraflex TOF/TOF: Bruker Daltonics&#39; ultraflex TOF/TOF: MALDI TOF.
Definition: cv.hpp:806
MS_ProteomeDiscoverer_Xtract_Highest_MZ_OBSOLETE
ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the mea...
Definition: cv.hpp:5150
MS_ProteomeDiscoverer_Max_Modifications_Per_Peptide
ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a pe...
Definition: cv.hpp:5267
MS_isotopic_pattern_area
isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e...
Definition: cv.hpp:5786
MS_Discrete_Mass_Spectrum
Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contai...
Definition: cv.hpp:554
MS_Sequest_sort_by_dCn
Sequest:sort_by_dCn:
Definition: cv.hpp:3464
MS_Savitzky_Golay_smoothing
Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree...
Definition: cv.hpp:2858
MS_DFS
DFS: Thermo Scientific DFS HR GC-MS.
Definition: cv.hpp:2432
UNIMOD_ICAT_G_2H_8_
ICAT-G:2H(8): Gygi ICAT(TM) d8.
Definition: cv.hpp:6476
UO_cubic_decimeter
cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3]...
Definition: cv.hpp:9599
UNIMOD_CoenzymeA
CoenzymeA: Cysteine modified Coenzyme A.
Definition: cv.hpp:6941
MS_ProteomeDiscoverer_Spectrum_Selector_Lower_RT_Limit
ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.
Definition: cv.hpp:5063
UNIMOD_CuSMo
CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.
Definition: cv.hpp:7316
MS_Sequest_ProcessAll
Sequest:ProcessAll:
Definition: cv.hpp:3584
UO_parts_per_billion
parts per billion: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:9803
UNIMOD_Cys__Ala
Cys-&gt;Ala: Cys-&gt;Ala substitution.
Definition: cv.hpp:8516
MS_search_engine_specific_score
search engine specific score: Search engine specific scores.
Definition: cv.hpp:3758
UO_minute
minute: A time unit which is equal to 60 seconds.
Definition: cv.hpp:9392
UNIMOD_BisANS
BisANS: 4,4\&#39;-dianilino-1,1\&#39;-binaphthyl-5,5\&#39;-disulfonic acid.
Definition: cv.hpp:7430
MS_IDMS
IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an iso...
Definition: cv.hpp:893
UO_count_per_nanomolar
count per nanomolar: A rate unit which is equal to one over one nanomolar.
Definition: cv.hpp:10145
UNIMOD_Hypusine
Hypusine: Hypusine.
Definition: cv.hpp:7151
MS_Sequest_sort_by_TIC
Sequest:sort_by_TIC:
Definition: cv.hpp:3521
MS_Sequest_Full
Sequest:Full:
Definition: cv.hpp:3632
MS_daly_detector
daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
Definition: cv.hpp:482
MS_Data_Explorer
Data Explorer: Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2054
MS_protein_attribute
protein attribute: An nonphysical attribute describing a specific protein.
Definition: cv.hpp:3194
MS_atmospheric_pressure_chemical_ionization
atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressur...
Definition: cv.hpp:320
MS_data_file_content
data file content: Describes the data content on the file.
Definition: cv.hpp:2018
UNIMOD_iTRAQ4plex114
iTRAQ4plex114: Accurate mass for 114.
Definition: cv.hpp:7460
MS_PEAKS_Online
PEAKS Online: PEAKS Online software for high throughput data analysis.
Definition: cv.hpp:6095
MS_neptune
neptune: ThermoFinnigan NEPTUNE MS.
Definition: cv.hpp:737
MS_ProteomeDiscoverer_Xtract_Highest_Charge
ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution ...
Definition: cv.hpp:5147
MS_6310_Ion_Trap_LC_MS
6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1856
MS_analog_ion
analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the th...
Definition: cv.hpp:1478
MS_error_on_absolute_quantity
error on absolute quantity: Error on absolute quantity.
Definition: cv.hpp:3713
MS_pI
pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an elect...
Definition: cv.hpp:3125
MS_param__z_2_ion
param: z+2 ion:
Definition: cv.hpp:4460
UNIMOD_Diethylphosphate
Diethylphosphate: O-Diethylphosphorylation.
Definition: cv.hpp:7928
MS_septum
septum: A disc composed of a flexible material that seals the entrance to the reservoir. Can also be enterance to the vaccum chamber.
Definition: cv.hpp:314
UNIMOD_Palmitoyl
Palmitoyl: Palmitoylation.
Definition: cv.hpp:6563
UO_kelvin
kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic...
Definition: cv.hpp:9335
UNIMOD_Val__Lys
Val-&gt;Lys: Val-&gt;Lys substitution.
Definition: cv.hpp:8993
MS_spectra_combination
spectra combination: Method used to combine the mass spectra.
Definition: cv.hpp:2159
UNIMOD_Arg__Trp
Arg-&gt;Trp: Arg-&gt;Trp substitution.
Definition: cv.hpp:7751
MS_param__b_ion_H2O
param: b ion-H2O: Ion b - H2O if b significant and fragment includes STED.
Definition: cv.hpp:3749
MS_Xevo_TQ_S
Xevo TQ-S: Waters quadrupole based.
Definition: cv.hpp:5624
MS_MassHunter_Metabolite_ID
MassHunter Metabolite ID: Software for identification of metabolites.
Definition: cv.hpp:2555
MS_number_of_sequences_searched
number of sequences searched: The number of sequences (proteins / nucleotides) from the database sear...
Definition: cv.hpp:3425
UNIMOD_Delta_H_1_O__1_18O_1_
Delta:H(1)O(-1)18O(1): Glycosylated asparagine 18O labeling.
Definition: cv.hpp:6794
MS_ACQUITY_UPLC_H_Class_Bio
ACQUITY UPLC H-Class Bio: Waters LC-system.
Definition: cv.hpp:5537
MS_neutral_loss_OBSOLETE
neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD?
Definition: cv.hpp:3506
UO_einstein_per_square_meter_per_second
einstein per square meter per second: An irradiance unit which is equal to one einstein per square me...
Definition: cv.hpp:9761
UNIMOD_Ub_amide
Ub-amide: Ub amide probe addition.
Definition: cv.hpp:9125
UNIMOD_Label_13C_6_15N_1_
Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.
Definition: cv.hpp:7904
UO_millimole
millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.
Definition: cv.hpp:9419
MS_MAT95XP_Trap
MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.
Definition: cv.hpp:728
MS_Progenesis_manual_alignment
Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors...
Definition: cv.hpp:5846
MS_pymzML
pymzML: Python module to interface mzML Data.
Definition: cv.hpp:5990
UNIMOD_Met__Ser
Met-&gt;Ser: Met-&gt;Ser substitution.
Definition: cv.hpp:8804
MS_submitter_keyword
submitter keyword: Keyword assigned by the data submitter.
Definition: cv.hpp:6026
MS_boxcar_smoothing
boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with tw...
Definition: cv.hpp:2879
UNIMOD_2_nitrobenzyl
2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).
Definition: cv.hpp:8450
MS_TSQ
TSQ: ThermoFinnigan TSQ MS.
Definition: cv.hpp:2759
MS_molecule_taxonomy
molecule taxonomy: The taxonomy of the resultant molecule from the search.
Definition: cv.hpp:3566
MS_precursor_recalculation
precursor recalculation: A process that recalculates existing precursor selected ions with one or mor...
Definition: cv.hpp:2852
MS_Th_s
Th/s: Unit describing the scan rate of a spectrum in Thomson per second.
Definition: cv.hpp:2957
UNIMOD_Asn__Asp
Asn-&gt;Asp: Asn-&gt;Asp substitution.
Definition: cv.hpp:7703
MS_QSTAR_Elite
QSTAR Elite: AB SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.
Definition: cv.hpp:2477
UO_linear_density_unit
linear density unit: A density unit which is a standard measure of the mass exerting an influence on ...
Definition: cv.hpp:9842
UNIMOD_DTT_ST
DTT_ST: Dithiothreitol (DTT).
Definition: cv.hpp:7952
MS_custom_unreleased_software_tool
custom unreleased software tool: A software tool that has not yet been released. The value should des...
Definition: cv.hpp:2924
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5390
MS_ProteomeDiscoverer_Non_Fragment_Filter_Maximum_Neutral_Loss_Mass
ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral l...
Definition: cv.hpp:5117
UNIMOD_Thr__Phe
Thr-&gt;Phe: Thr-&gt;Phe substitution.
Definition: cv.hpp:8966
UNIMOD_SUMO3549
SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.
Definition: cv.hpp:8309
MS_param__y_ion_NH3
param: y ion-NH3:
Definition: cv.hpp:3752
MS_Pro_ICAT
Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT. ...
Definition: cv.hpp:2516
MS_DTASelect_file
DTASelect file:
Definition: cv.hpp:4625
UNIMOD_Phe__Pro
Phe-&gt;Pro: Phe-&gt;Pro substitution.
Definition: cv.hpp:8645
MS_ProteomeDiscoverer_Mascot_Time_interval_between_attempts_to_submit_a_search
ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between at...
Definition: cv.hpp:5207
MS_spectrum_interpretation
spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing t...
Definition: cv.hpp:3353
MS_possible_charge_state
possible charge state: A possible charge state of the ion in a situation where the charge of an ion i...
Definition: cv.hpp:2411
UNIMOD_Met__Cys
Met-&gt;Cys: Met-&gt;Cys substitution.
Definition: cv.hpp:8777
UNIMOD_Thr__Asp
Thr-&gt;Asp: Thr-&gt;Asp substitution.
Definition: cv.hpp:8960
UNIMOD_Xle__Glu
Xle-&gt;Glu: Leu/Ile-&gt;Glu substitution.
Definition: cv.hpp:8732
MS_Sequest_sort_by_PreviousAminoAcid
Sequest:sort_by_PreviousAminoAcid:
Definition: cv.hpp:3482
MS_family_member_protein
family member protein: A protein with significant homology to another protein, but some distinguishin...
Definition: cv.hpp:5024
UO_picomolal
picomolal: A molality unit which is equal to 10^[-12] m.
Definition: cv.hpp:9515
MS_ProteomeDiscoverer_Search_Modifications_Only_For_Identified_Proteins
ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications se...
Definition: cv.hpp:5357
MS_DTA_file
DTA file: Sequest DTA file format.
Definition: cv.hpp:2339
MS_exponential
exponential: The mass scan is done in exponential mode.
Definition: cv.hpp:428
MS_6220_Time_of_Flight_LC_MS
6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition: cv.hpp:2534
MS_TLF
TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished b...
Definition: cv.hpp:1256
MS_liquid_secondary_ionization
liquid secondary ionization: The ionization of any species by the interaction of a focused beam of io...
Definition: cv.hpp:1595
MS_file_format
file format: Format of data files.
Definition: cv.hpp:4610
MS_enhanced_resolution_scan_OBSOLETE
enhanced resolution scan: Scan with enhanced resolution.
Definition: cv.hpp:2900
MS_Empower
Empower: Waters software for liquid chromatography acquisition, processing, data analysis and data ma...
Definition: cv.hpp:5630
UNIMOD_VFQQQTGG
VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).
Definition: cv.hpp:8225
MS_DESI
DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization meth...
Definition: cv.hpp:6308
UO_image_resolution_unit
image resolution unit: An information unit which is a standard measure of the detail an image holds...
Definition: cv.hpp:10001
UNIMOD_Didehydroretinylidene
Didehydroretinylidene: 3,4-didehydroretinylidene.
Definition: cv.hpp:7286
MS_AMS
AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sa...
Definition: cv.hpp:965
MS_ProteomeDiscoverer_Use_Neutral_Loss_a_Ions
ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for ...
Definition: cv.hpp:5300
UNIMOD_Gln__Asp
Gln-&gt;Asp: Gln-&gt;Asp substitution.
Definition: cv.hpp:8885
MS_mass_analyzer_type
mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio...
Definition: cv.hpp:1751
MS_AXIMA_Assurance_Linear_MALDI_TOF
AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS...
Definition: cv.hpp:2336
UNIMOD_LG_anhyropyrrole
LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.
Definition: cv.hpp:8270
MS_acquisition_software
acquisition software: Acquisition software.
Definition: cv.hpp:4598
UNIMOD_LeuArgGlyGly
LeuArgGlyGly: Ubiquitination.
Definition: cv.hpp:7469
UNIMOD_2_dimethylsuccinyl
2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.
Definition: cv.hpp:9131
MS_MRM_spectrum
MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corr...
Definition: cv.hpp:2234
UNIMOD_NO_SMX_SEMD
NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.
Definition: cv.hpp:7976
UNIMOD_Pro__Pyrrolidone
Pro-&gt;Pyrrolidone: Pyrrolidone from Proline.
Definition: cv.hpp:7127
MS_MALDI_Synapt_G2_S_MS
MALDI Synapt G2-S MS: Waters oa-ToF based.
Definition: cv.hpp:5570
MS_completion_time
completion time: The time that a data processing action was finished.
Definition: cv.hpp:2750
MS_electrostatic_energy_analyzer
electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinder...
Definition: cv.hpp:1058
MS_nth_generation_product_ion
nth generation product ion: Serial product ions from dissociation of selected precursor ions where n ...
Definition: cv.hpp:1421
UO_micromole
micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.
Definition: cv.hpp:9416
UO_kilovolt
kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V...
Definition: cv.hpp:10037
MS_ProteinExtractor_MaxProteinMass
ProteinExtractor:MaxProteinMass:
Definition: cv.hpp:4517
UNIMOD_Propargylamine
Propargylamine: Propargylamine.
Definition: cv.hpp:8300
UNIMOD_Phe__His
Phe-&gt;His: Phe-&gt;His substitution.
Definition: cv.hpp:8633
UNIMOD_OxArgBiotinRed
OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced. ...
Definition: cv.hpp:6671
MS_three_sample_run
three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).
Definition: cv.hpp:5708
UNIMOD_Biotin_Cayman_10141
Biotin:Cayman-10141: Was 15dB-biotin.
Definition: cv.hpp:7478
MS_ProteomeDiscoverer_Maximum_Protein_References_Per_Peptide
ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single i...
Definition: cv.hpp:5276
MS_NICI
NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negativ...
Definition: cv.hpp:1166
MS_PDA
PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visa...
Definition: cv.hpp:2369
UO_pressure_unit
pressure unit: A unit which is a standard measure of the force applied to a given area...
Definition: cv.hpp:9626
UNIMOD_SulfanilicAcid
SulfanilicAcid: Light Sulfanilic Acid (SA) C12.
Definition: cv.hpp:6947
MS_Mascot_PTM_site_assignment_confidence
Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct...
Definition: cv.hpp:6311
UNIMOD_Xlink_EGS
Xlink:EGS: Monolink of EGS crosslinker to Lys or N-terminus.
Definition: cv.hpp:8429
MS_esquire_6000
esquire 6000: Bruker Daltonics&#39; esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
Definition: cv.hpp:671
UNIMOD_Biotin_PEG_PRA
Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.
Definition: cv.hpp:8159
MS_Mascot_IncludeErrorTolerantMatches
Mascot:IncludeErrorTolerantMatches:
Definition: cv.hpp:4217
UNIMOD_DAET
DAET: Phosphorylation to amine thiol.
Definition: cv.hpp:6806
MS_FWHM
FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half p...
Definition: cv.hpp:404
MS_PROTEINEER_dp
PROTEINEER dp: Bruker PROTEINEER dp software.
Definition: cv.hpp:2699
UNIMOD_Cys__Glu
Cys-&gt;Glu: Cys-&gt;Glu substitution.
Definition: cv.hpp:8522
MS_ANOVA_p_value
ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).
Definition: cv.hpp:5810
UNIMOD_Pro__Pyrrolidinone
Pro-&gt;Pyrrolidinone: Proline oxidation to pyrrolidinone.
Definition: cv.hpp:7103
UNIMOD_HydroxymethylOP
HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.
Definition: cv.hpp:8135
UNIMOD_Ala__Pro
Ala-&gt;Pro: Ala-&gt;Pro substitution.
Definition: cv.hpp:7493
MS_photomultiplier
photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then a...
Definition: cv.hpp:509
MS_ESI
ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from ...
Definition: cv.hpp:341
UNIMOD_QEQTGG
QEQTGG: SUMOylation by SUMO-1.
Definition: cv.hpp:8120
MS_spectrum_title
spectrum title: A free-form text title describing a spectrum.
Definition: cv.hpp:2915
MS_Q_Exactive
Q Exactive: Thermo Scientific Q Exactive.
Definition: cv.hpp:5981
MS_full_width_at_half_maximum
full width at half-maximum: A measure of resolution represented as width of the peak at half peak hei...
Definition: cv.hpp:401
UO_molar
molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solut...
Definition: cv.hpp:9485
MS_MyriMatch
MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra...
Definition: cv.hpp:4991
MS_ProteinExtractor_IncludeIdentified
ProteinExtractor:IncludeIdentified:
Definition: cv.hpp:4511
UO_unit_of_normality
unit of normality: A unit of concentration which highlights the chemical nature of salts...
Definition: cv.hpp:9521
MS_high_intensity_threshold
high intensity threshold: Threshold above which some action is taken.
Definition: cv.hpp:2405
MS_number_of_molecular_hypothesis_considered
number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the nu...
Definition: cv.hpp:3830
MS_programmer
programmer:
Definition: cv.hpp:4064
MS_Sequest_sortCV
Sequest:sortCV: Branch containing the CV terms for Sequest View / Sort Input Parameters.
Definition: cv.hpp:3452
std::multimap< std::string, CVID > otherRelations
Definition: cv.hpp:10195
UNIMOD_Trp__Ala
Trp-&gt;Ala: Trp-&gt;Ala substitution.
Definition: cv.hpp:9020
MS_Isotopologue_ion
Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constitu...
Definition: cv.hpp:1511
UO_watt
watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per seco...
Definition: cv.hpp:9641
UNIMOD_CAF
CAF: Sulfonation of N-terminus.
Definition: cv.hpp:6923
UNIMOD_Trp__Phe
Trp-&gt;Phe: Trp-&gt;Phe substitution.
Definition: cv.hpp:9029
MS_protein_value__mean_of_peptide_ratios
protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide rat...
Definition: cv.hpp:5828
UO_nanosievert
nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 1...
Definition: cv.hpp:9728
MS_dried_droplet_MALDI_matrix_preparation
dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.
Definition: cv.hpp:3044
UNIMOD_SecNEM
SecNEM: N-ethylmaleimide on selenocysteines.
Definition: cv.hpp:8453
UNIMOD_Hex_3_HexNAc_4_
Hex(3)HexNAc(4): Biantennary (-2 galactose).
Definition: cv.hpp:7001
UNIMOD_GIST_Quat_2H_9_
GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term &amp; K.
Definition: cv.hpp:6608
MS_Agilent_instrument_model
Agilent instrument model: Agilent instrument model.
Definition: cv.hpp:1910
MS_Acquity_UPLC_FLR
Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.
Definition: cv.hpp:2996
MS_translation_table_description
translation table description: A URL that describes the translation table used to translate the nucle...
Definition: cv.hpp:4502
UNIMOD_Malonyl
Malonyl: Malonylation of C and S residues.
Definition: cv.hpp:7985
MS_array_detector
array detector: Detector comprising several ion collection elements, arranged in a line or grid where...
Definition: cv.hpp:1448
MS_percolator_score
percolator:score: Percolator:score.
Definition: cv.hpp:4715
MS_PRIDE_experiment_URI
PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.
Definition: cv.hpp:6038
MS_32_bit_integer
32-bit integer: Signed 32-bit little-endian integer.
Definition: cv.hpp:2003
MS_Dionex_instrument_model
Dionex instrument model: Dionex instrument model.
Definition: cv.hpp:1913
MS_non_identified_ion
non-identified ion: Non-identified ion.
Definition: cv.hpp:3992
MS_Trapper
Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology.
Definition: cv.hpp:2108
UNIMOD_Gln__Xle
Gln-&gt;Xle: Gln-&gt;Leu/Ile substitution.
Definition: cv.hpp:7745
MS_Sequest_SelectAdvancedCV
Sequest:SelectAdvancedCV: Branch containing the CV terms for Sequest Select Advanced Input Parameters...
Definition: cv.hpp:3734
UNIMOD_Gln__Met
Gln-&gt;Met: Gln-&gt;Met substitution.
Definition: cv.hpp:8894
MS_TOF_TOF_5800
TOF/TOF 5800: AB SCIEX or Applied Biosystems|MDS Analytical Technologies AB SCIEX TOF/TOF 5800 Analyz...
Definition: cv.hpp:4685
UNIMOD_His__Phe
His-&gt;Phe: His-&gt;Phe substitution.
Definition: cv.hpp:8699
UNIMOD_Nethylmaleimide_water
Nethylmaleimide+water: Nethylmaleimidehydrolysis.
Definition: cv.hpp:7028
UO_microvolt
microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6]...
Definition: cv.hpp:10040
MS_BioAnalyst
BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.
Definition: cv.hpp:2510
MS_transition
transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in com...
Definition: cv.hpp:3269
MS_zlib_compression
zlib compression: Zlib.
Definition: cv.hpp:2171
MS_proteomics_solution_1
proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.
Definition: cv.hpp:758
MS_Mascot_RequireBoldRed
Mascot:RequireBoldRed:
Definition: cv.hpp:4211
MS_Sequest_FormatAndLinks
Sequest:FormatAndLinks:
Definition: cv.hpp:3659
MS_adiabatic_ionization
adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to prod...
Definition: cv.hpp:1553
MS_param__internal_yb_ion
param: internal yb ion:
Definition: cv.hpp:4451
UNIMOD_Biotin_Thermo_21901_H2O
Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.
Definition: cv.hpp:8471
MS_PRIDE_project_URI
PRIDE project URI: URI that allows the access to one project in the PRIDE database.
Definition: cv.hpp:6041
MS_isolation_width
isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selec...
Definition: cv.hpp:161
MS_DB_sequence_filter_pattern
DB sequence filter pattern:
Definition: cv.hpp:4778
UO_cell_concentration_unit
cell concentration unit: A concentration unit which denotes the average cell number in a given volume...
Definition: cv.hpp:9893
MS_transmission_quadrupole_mass_spectrometer
transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods wh...
Definition: cv.hpp:1310
MS_in_source_collision_induced_dissociation
in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excit...
Definition: cv.hpp:5888
UNIMOD_IMID_2H_4_
IMID:2H(4): IMID d4.
Definition: cv.hpp:6638
UNIMOD_Met__Asn
Met-&gt;Asn: Met-&gt;Asn substitution.
Definition: cv.hpp:8795
MS_ProteomeDiscoverer_Xtract_Overlapping_Remainder
ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlappi...
Definition: cv.hpp:5162
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_
Hex(1)HexNAc(1)NeuAc(2): Hex1HexNAc1NeuAc2.
Definition: cv.hpp:6785
MS_CRM_spectrum
CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and ...
Definition: cv.hpp:2216
UNIMOD_Asn__Met
Asn-&gt;Met: Asn-&gt;Met substitution.
Definition: cv.hpp:8828
MS_focal_plane_collector
focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously i...
Definition: cv.hpp:1457
UNIMOD_Iminobiotin
Iminobiotin: Iminobiotinylation.
Definition: cv.hpp:6620
UNIMOD_Cation_Ag
Cation:Ag: Replacement of proton by silver.
Definition: cv.hpp:8291
MS_binary_data_array
binary data array: A data array of values.
Definition: cv.hpp:1985
MS_ProteomeDiscoverer_Use_Neutral_Loss_z_Ions
ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for ...
Definition: cv.hpp:5309
UO_millivolt
millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3...
Definition: cv.hpp:10034
UNIMOD_Methyl_2H_3_
Methyl:2H(3): Deuterated methyl ester.
Definition: cv.hpp:6977
MS_microchannel_plate_detector
microchannel plate detector: A thin plate that contains a closely spaced array of channels that each ...
Definition: cv.hpp:500
MS_surface_enhanced_laser_desorption_ionization
surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from ...
Definition: cv.hpp:1205
MS_msPrefix_precursor_recalculation
msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection ...
Definition: cv.hpp:2855
UNIMOD_Can_FP_biotin
Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.
Definition: cv.hpp:7052
UNIMOD_Ala__Gln
Ala-&gt;Gln: Ala-&gt;Gln substitution.
Definition: cv.hpp:8504
UNIMOD_O_Isopropylmethylphosphonate
O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.
Definition: cv.hpp:7940
MS_scan_number_only_nativeID_format
scan number only nativeID format: scan=xsd:nonNegativeInteger.
Definition: cv.hpp:2840
MS_single_ion_monitoring_OBSOLETE
single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scann...
Definition: cv.hpp:455
UNIMOD_ZGB
ZGB: NHS ester linked Green Fluorescent Bodipy Dye.
Definition: cv.hpp:8108
MS_PEAKS_proteinScore
PEAKS:proteinScore: The PEAKS protein &#39;-10lgP Score&#39;.
Definition: cv.hpp:6107
UNIMOD_Fluoro
Fluoro: Fluorophenylalanine replacement of phenylalanine.
Definition: cv.hpp:6695
UO_chroma_sampling_unit
chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial d...
Definition: cv.hpp:10004
MS_detector_attribute
detector attribute: Detector attribute recognized as a value.
Definition: cv.hpp:1883
UNIMOD_Biotin_Thermo_33033_H
Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.
Definition: cv.hpp:9104
MS_frag__b_ion___NH3
frag: b ion - NH3: Fragmentation information, type of product: b ion without ammonium ion...
Definition: cv.hpp:3968
UNIMOD_Dimethyl_2H_6_
Dimethyl:2H(6): Dimethyl-Medium.
Definition: cv.hpp:9188
UNIMOD_Gln__Thr
Gln-&gt;Thr: Gln-&gt;Thr substitution.
Definition: cv.hpp:8903
MS______ALIV_____P_
(?&lt;=[ALIV])(?!P):
Definition: cv.hpp:6125
MS_collision_quadrupole
collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to...
Definition: cv.hpp:1187
MS_Pro_ID
Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.
Definition: cv.hpp:2513
MS_Mascot
Mascot:
Definition: cv.hpp:3890
UNIMOD_Dimethyl_2H_4_13C_2_
Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.
Definition: cv.hpp:7412
UNIMOD_His__Trp
His-&gt;Trp: His-&gt;Trp substitution.
Definition: cv.hpp:8720
UNIMOD_Met__Pro
Met-&gt;Pro: Met-&gt;Pro substitution.
Definition: cv.hpp:8798
MS_LOWESS_smoothing
LOWESS smoothing: Reduces intensity spikes by applying a modeling method known as locally weighted po...
Definition: cv.hpp:2861
MS_simple_ratio_of_two_value
simple ratio of two value: Simple ratio of two values (enumerator and denominator).
Definition: cv.hpp:5792
UNIMOD_MicrocinC7
MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.
Definition: cv.hpp:7298
UNIMOD_Ammonium
Ammonium: Replacement of proton with ammonium ion.
Definition: cv.hpp:8351
MS_fragment_mass_type_mono
fragment mass type mono: Mass type setting for fragment mass was monoisotopic.
Definition: cv.hpp:4034
UNIMOD_Phycoerythrobilin
Phycoerythrobilin: Phycoerythrobilin.
Definition: cv.hpp:7169
UNIMOD_Pyridylacetyl
Pyridylacetyl: Pyridylacetyl.
Definition: cv.hpp:6506
UO_energy_unit
energy unit: A unit which is a standard measure of the work done by a certain force (gravitational...
Definition: cv.hpp:9632
MS_spectrum_from_database_string_nativeID_format
spectrum from database string nativeID format: databasekey=xsd:string.
Definition: cv.hpp:4835
MS_Mascot_identity_threshold
Mascot:identity threshold: The Mascot result &#39;identity threshold&#39;.
Definition: cv.hpp:4355
MS_Sequest_xcorr
Sequest:xcorr: The SEQUEST result &#39;XCorr&#39;.
Definition: cv.hpp:3764
UNIMOD_GGQ
GGQ: SUMOylation leaving GlyGlyGln.
Definition: cv.hpp:9191
UNIMOD_Phe__Tyr
Phe-&gt;Tyr: Phe-&gt;Tyr substitution.
Definition: cv.hpp:7571
UNIMOD_Ser__Arg
Ser-&gt;Arg: Ser-&gt;Arg substitution.
Definition: cv.hpp:7805
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_Mass_Analyzer_Mismatch
ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spe...
Definition: cv.hpp:5135
MS_Sequence_database_filters
Sequence database filters: Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search.
Definition: cv.hpp:4775
MS_ultima
ultima: IonSpec Ultima MS.
Definition: cv.hpp:800
MS_Gaussian_smoothing
Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian f...
Definition: cv.hpp:2864
MS_chemical_compound_attribute
chemical compound attribute: A describable property of a chemical compound.
Definition: cv.hpp:3119
MS_LTQ_Orbitrap_Elite
LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.
Definition: cv.hpp:5978
UO_square_millimeter
square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2]...
Definition: cv.hpp:9545
MS_SpectrumMill_SPI
SpectrumMill:SPI: SpectrumMill SPI score (%).
Definition: cv.hpp:4952
MS_DB_accession_filter_string
DB accession filter string:
Definition: cv.hpp:4781
MS_RawFile_attribute
RawFile attribute: Attribute describing a raw file.
Definition: cv.hpp:5699
UNIMOD_Amino
Amino: Tyrosine oxidation to 2-aminotyrosine.
Definition: cv.hpp:7064
MS_source_sprayer_type
source sprayer type: The source sprayer type.
Definition: cv.hpp:6053
MS_high_intensity_data_point_removal
high intensity data point removal: The removal of very high intensity data points.
Definition: cv.hpp:2747
MS_sample_attribute
sample attribute: Sample properties that are associated with a value.
Definition: cv.hpp:2093
MS_FI
FI (field ionization): The removal of electrons from any species by interaction with a high electric ...
Definition: cv.hpp:1085
UNIMOD_Val__Met
Val-&gt;Met: Val-&gt;Met substitution.
Definition: cv.hpp:7847
MS_ultraflex
ultraflex: Bruker Daltonics&#39; ultraflex: MALDI TOF.
Definition: cv.hpp:803
UNIMOD_Hex_1_HexNAc_2_dHex_2_
Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.
Definition: cv.hpp:6773
UNIMOD_His__Ala
His-&gt;Ala: His-&gt;Ala substitution.
Definition: cv.hpp:8690
MS_ProteinScape_Gel
ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.
Definition: cv.hpp:4088
MS_sample
sample: Terms to describe the sample.
Definition: cv.hpp:1805
MS_MIKES
MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass s...
Definition: cv.hpp:1142
MS_multiple_stage_mass_spectrometry
multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ...
Definition: cv.hpp:1157
UNIMOD_Biotin_HPDP
Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.
Definition: cv.hpp:6959
MS_max_peak_picking
max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to co...
Definition: cv.hpp:2939
MS_micrOTOF_II
micrOTOF II: Bruker Daltonics&#39; micrOTOF II: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:4859
MS_ion_
ion?: An atomic or molecular species having a net positive or negative electric charge.
Definition: cv.hpp:1508
MS_transition_purported_from_an_MS_MS_spectrum_on_a_different__specified_instrument
transition purported from an MS/MS spectrum on a different, specified instrument: The transition has ...
Definition: cv.hpp:3284
MS_minute_OBSOLETE
minute: Acquisition time in minutes.
Definition: cv.hpp:209
UNIMOD_GluGluGluGlu
GluGluGluGlu: Tetraglutamyl.
Definition: cv.hpp:7340
MS_translation_frame_OBSOLETE
translation frame: OSBOLETE: use attribute in mzIdentML instead. The translated open reading frames f...
Definition: cv.hpp:3410
MS_ProteinExtractor_UseMascot
ProteinExtractor:UseMascot:
Definition: cv.hpp:4523
MS_centroid_spectrum
centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero...
Definition: cv.hpp:551
MS_focal_plane_array
focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultane...
Definition: cv.hpp:497
UNIMOD_Pro__pyro_Glu
Pro-&gt;pyro-Glu: Proline oxidation to pyroglutamic acid.
Definition: cv.hpp:7100
MS_linear_ion_trap
linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by...
Definition: cv.hpp:1274
UNIMOD_BHT
BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.
Definition: cv.hpp:6803
MS_manual_validation
manual validation: Result of quality estimation: decision of a manual validation. ...
Definition: cv.hpp:3674
MS_database_nr
database nr:
Definition: cv.hpp:3551
MS_multiple_ion_monitoring
multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values...
Definition: cv.hpp:440
MS_MRM_transition_type
MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy...
Definition: cv.hpp:6284
UNIMOD_His__Pro
His-&gt;Pro: His-&gt;Pro substitution.
Definition: cv.hpp:7601
MS_signal_to_noise_ratio
signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signa...
Definition: cv.hpp:5900
UNIMOD_Xle__Arg
Xle-&gt;Arg: Leu/Ile-&gt;Arg substitution.
Definition: cv.hpp:7670
MS_MIM_spectrum
MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the...
Definition: cv.hpp:2222
UO_kilogram_per_square_meter
kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms ...
Definition: cv.hpp:9557
MS_Sequest_out_file
Sequest out file: Source file for this mzIdentML was ONE Sequest out file.
Definition: cv.hpp:3875
UNIMOD_Arg__Met
Arg-&gt;Met: Arg-&gt;Met substitution.
Definition: cv.hpp:7769
MS_pep_FDR_threshold
pep:FDR threshold: False-discovery rate threshold for peptides.
Definition: cv.hpp:4577
MS_SORI
SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotr...
Definition: cv.hpp:1232
UNIMOD_Gln__Val
Gln-&gt;Val: Gln-&gt;Val substitution.
Definition: cv.hpp:8906
UNIMOD_NO_SMX_SIMD
NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.
Definition: cv.hpp:7982
UNIMOD_Dihydroxyimidazolidine
Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.
Definition: cv.hpp:8069
MS_3200_QTRAP
3200 QTRAP: AB SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.
Definition: cv.hpp:2465
MS_ProteomeDiscoverer_Minimal_peptide_probability
ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to ...
Definition: cv.hpp:5426
MS_inlet_attribute
inlet attribute: Inlet properties that are associated with a value.
Definition: cv.hpp:6395
UNIMOD_HexNAc_1_dHex_1_
HexNAc(1)dHex(1): HexNAc1dHex1.
Definition: cv.hpp:6731
MS_SMILES_string
SMILES string: The simplified molecular input line entry specification or SMILES is a specification f...
Definition: cv.hpp:3146
MS_penning_ionization
penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous spe...
Definition: cv.hpp:1610
UNIMOD_Difuran
Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction...
Definition: cv.hpp:9161
UO_momentum_unit
momentum unit: A unit which is a standard measure of the quantity of motion measured by the product o...
Definition: cv.hpp:9470
MS_consecutive_reaction_monitoring
consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in wh...
Definition: cv.hpp:998
MS_Mascot_Parser
Mascot Parser: Mascot Parser was used to analyze the spectra.
Definition: cv.hpp:4673
UNIMOD_Glu__Cys
Glu-&gt;Cys: Glu-&gt;Cys substitution.
Definition: cv.hpp:8585
UNIMOD_Ala__Trp
Ala-&gt;Trp: Ala-&gt;Trp substitution.
Definition: cv.hpp:8510
MS_scan_direction
scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high...
Definition: cv.hpp:146
MS_mass_analyzer_attribute
mass analyzer attribute: Analyzer properties that are associated with a value.
Definition: cv.hpp:1880
UNIMOD_DiLeu4plex
DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.
Definition: cv.hpp:9254
UNIMOD_Tyr__Cys
Tyr-&gt;Cys: Tyr-&gt;Cys substitution.
Definition: cv.hpp:7889
MS_database_type_amino_acid
database type amino acid: Database contains amino acid sequences.
Definition: cv.hpp:3533
MS_Bruker_Daltonics_instrument_model
Bruker Daltonics instrument model: Bruker Daltonics instrument model.
Definition: cv.hpp:536
UNIMOD_Lys__Gly
Lys-&gt;Gly: Lys-&gt;Gly substitution.
Definition: cv.hpp:8753
MS_peptide_modification_details
peptide modification details: The children of this term can be used to describe modifications.
Definition: cv.hpp:4643
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr para...
Definition: cv.hpp:5372
UNIMOD_DeStreak
DeStreak: Cysteine mercaptoethanol.
Definition: cv.hpp:6989
MS_ProteinScape_second_round_Mascot
ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.
Definition: cv.hpp:6146
MS_lab_personnel
lab personnel:
Definition: cv.hpp:4070
UNIMOD_Asp__Ser
Asp-&gt;Ser: Asp-&gt;Ser substitution.
Definition: cv.hpp:8576
UNIMOD_Bromo
Bromo: Bromination.
Definition: cv.hpp:7061
MS_mass_resolution
mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley betwee...
Definition: cv.hpp:125
UNIMOD_Cy3b_maleimide
Cy3b-maleimide: Fluorescent dye that labels cysteines.
Definition: cv.hpp:8054
MS_AXIMA_QIT
AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.
Definition: cv.hpp:2324
MS_LCMS_2010EV
LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.
Definition: cv.hpp:2315
MS_local_FDR
local FDR: Result of quality estimation: the local FDR at the current position of a sorted list...
Definition: cv.hpp:4016
UNIMOD_Tyr__Dha
Tyr-&gt;Dha: Dehydroalanine (from Tyrosine).
Definition: cv.hpp:7202
UO_gram_per_milliliter
gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the ...
Definition: cv.hpp:9812
MS_sequence_sub_set_protein
sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protei...
Definition: cv.hpp:5036
UNIMOD_Ala__Asp
Ala-&gt;Asp: Ala-&gt;Asp substitution.
Definition: cv.hpp:7490
MS_MS_GF
MS-GF: MS-GF software used to re-score the peptide-spectrum matches.
Definition: cv.hpp:6419
MS_top_hat_baseline_reduction
top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations ...
Definition: cv.hpp:6242
CVID_Unknown
Definition: cv.hpp:89
UNIMOD_HMVK
HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.
Definition: cv.hpp:7130
MS_Compass_Security_Pack
Compass Security Pack: Bruker compass Security Pack software.
Definition: cv.hpp:2657
MS_ion_neutral_complex
ion/neutral complex: A particular type of transition state that lies between precursor and product io...
Definition: cv.hpp:1700
UO_degree_celsius
degree celsius: A temperature unit which is equal to one Kelvin degree. However, they have their zero...
Definition: cv.hpp:9380
UO_meter_per_second_per_second
meter per second per second: An acceleration unit which is equal to the acceleration an object changi...
Definition: cv.hpp:9530
MS_ProteomeDiscoverer_Mascot_Weight_of_W_Ions
ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching...
Definition: cv.hpp:5492
MS_Sequest_sp
Sequest:sp: The SEQUEST result &#39;Sp&#39; (protein).
Definition: cv.hpp:3770
UO_microcurie
microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6...
Definition: cv.hpp:9734
UNIMOD_Gln__His
Gln-&gt;His: Gln-&gt;His substitution.
Definition: cv.hpp:7739
MS_SI_OBSOLETE
SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface wi...
Definition: cv.hpp:1220
MS_XIC_area
XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).
Definition: cv.hpp:5822
UNIMOD_Thr__Val
Thr-&gt;Val: Thr-&gt;Val substitution.
Definition: cv.hpp:8978
MS_molecular_ion
molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the ad...
Definition: cv.hpp:1520
MS_GenoTools
GenoTools: Bruker GenoTools software.
Definition: cv.hpp:2681
UNIMOD_Hex
Hex: Hexose.
Definition: cv.hpp:6545
MS_target_MRM_transition
target MRM transition (target SRM transition): A transition used to target a specific compound that m...
Definition: cv.hpp:6290
MS_role_type
role type: Role of a Person or Organization.
Definition: cv.hpp:4058
UO_molecule_count
molecule count: A dimensionless count unit which denotes the number of molecules. ...
Definition: cv.hpp:9869
MS_TSQ_Vantage
TSQ Vantage: TSQ Vantage.
Definition: cv.hpp:4769
UO_picogram
picogram: A mass unit which is equal to 10^[-12] g.
Definition: cv.hpp:9374
MS_LECO_software
LECO software: LECO software for data acquisition and analysis.
Definition: cv.hpp:5642
MS_direct_liquid_introduction
direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or des...
Definition: cv.hpp:1028
UNIMOD_Label_15N_4_
Label:15N(4): SILAC 15N(4).
Definition: cv.hpp:8165
UO_volt
volt: An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy.
Definition: cv.hpp:9947
MS_object_attribute
object attribute: Object Attribute.
Definition: cv.hpp:2090
UNIMOD_cGMP
cGMP: S-guanylation.
Definition: cv.hpp:8090
MS_ms_ms_search
ms-ms search: An ms/ms search (with fragment ions).
Definition: cv.hpp:3548
MS_charge_state_calculation
charge state calculation: A process that infers the charge state of an MSn spectrum&#39;s precursor(s) by...
Definition: cv.hpp:2846
UO_electric_potential_difference_unit
electric potential difference unit: A unit which is a standard measure of the work done per unit char...
Definition: cv.hpp:9944
MS_Progenesis_peptide_normalised_abundance
Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by ...
Definition: cv.hpp:5921
MS_MALDI_Synapt_HDMS
MALDI Synapt HDMS: Waters oa-ToF based.
Definition: cv.hpp:5573
MS_AA_sequence
AA sequence: The sequence is a amino acid sequence.
Definition: cv.hpp:4274
MS_MaxQuant_P_site_localization_probability
MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant sof...
Definition: cv.hpp:6206
MS_anchor_protein
anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-se...
Definition: cv.hpp:5021
MS_Mascot_expectation_value
Mascot:expectation value: The Mascot result &#39;expectation value&#39;.
Definition: cv.hpp:3815
UO_femtomole
femtomole: A substance unit equal to 10^[-15] mol.
Definition: cv.hpp:9428
MS_Mascot_ShowHomologousProteinsWithSamePeptides
Mascot:ShowHomologousProteinsWithSamePeptides:
Definition: cv.hpp:4205
MS_autoflex_TOF_TOF
autoflex TOF/TOF: Bruker Daltonics&#39; autoflex TOF/TOF MS: MALDI TOF.
Definition: cv.hpp:647
MS_Q_Tof_ultima
Q-Tof ultima: Waters Q-Tof Ultima MS.
Definition: cv.hpp:767
MS_pwiz
pwiz (ProteoWizard): ProteoWizard software for data processing and analysis. Primarily developed by t...
Definition: cv.hpp:2348
UNIMOD_Pro__Val
Pro-&gt;Val: Pro-&gt;Val substitution.
Definition: cv.hpp:8870
MS_param__a_ion_H2O
param: a ion-H2O: Ion a - H2O if a significant and fragment includes STED.
Definition: cv.hpp:3743
UNIMOD_Sulfide
Sulfide: Persulfide.
Definition: cv.hpp:7256
MS_ProteinExtractor_PhenyxWeighting
ProteinExtractor:PhenyxWeighting:
Definition: cv.hpp:4571
MS_max_fold_change
max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e...
Definition: cv.hpp:5807
MS_Sequest_SequencePartialFilter
Sequest:SequencePartialFilter:
Definition: cv.hpp:3434
UNIMOD_G_H1
G-H1: Glyoxal-derived hydroimiadazolone.
Definition: cv.hpp:8105
MS_Paragon_expression_change_p_value
Paragon:expression change p-value: The Paragon result &#39;Expression change P-value&#39;.
Definition: cv.hpp:3806
MS_ProteomeDiscoverer_SEQUEST_Weight_of_z_Ions
ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative fac...
Definition: cv.hpp:5336
UO_speed_velocity_unit
speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in...
Definition: cv.hpp:9479
MS_scan_polarity
scan polarity: An acquisition mode to which specifies weather polarity is negative, positive or alternating.
Definition: cv.hpp:1832
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_MS_Order_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order ...
Definition: cv.hpp:5105
MS_product_ion_m_z_error
product ion m/z error: The product ion m/z error.
Definition: cv.hpp:3953
UNIMOD_Gly__Lys
Gly-&gt;Lys: Gly-&gt;Lys substitution.
Definition: cv.hpp:8669
MS_MS2_tag_based_peptide_level_quantitation
MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.
Definition: cv.hpp:6350
UNIMOD_a_type_ion
a-type-ion: ISD a-series (C-Term).
Definition: cv.hpp:6725
MS_ProteinScape_SearchEvent
ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.
Definition: cv.hpp:4085
MS_TSQ_Quantum_Ultra
TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.
Definition: cv.hpp:2762
MS_clustal_aln
clustal aln: ClustalW ALN (multiple alignment) format.
Definition: cv.hpp:4295
MS_mass_spectrometry
mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the re...
Definition: cv.hpp:1145
MS_ProteomeDiscoverer_ZCore_Protein_Score_Cutoff
ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must ex...
Definition: cv.hpp:5339
MS_API_3000
API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.
Definition: cv.hpp:638
UNIMOD_SulfoGMBS
SulfoGMBS: High molecular absorption label for proteins.
Definition: cv.hpp:8255
UNIMOD_Label_13C_4_15N_2__GlyGly
Label:13C(4)15N(2)+GlyGly: 13C(4) 15N(2) Lysine glygly.
Definition: cv.hpp:8213
MS_data_processing
data processing (data transformation): Terms used to describe types of data processing.
Definition: cv.hpp:1787
MS_Pepitome_MVH
Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divi...
Definition: cv.hpp:5006
MS_MALDI
MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules t...
Definition: cv.hpp:353
MS_peptide_descriptions
peptide descriptions: Descriptions of peptides.
Definition: cv.hpp:4307
MS_Linked_Scan_at_Constant_E2_V
Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at lea...
Definition: cv.hpp:1403
MS_ion_injection_time
ion injection time: The length of time spent filling an ion trapping device.
Definition: cv.hpp:3329
UNIMOD_Xle__Trp
Xle-&gt;Trp: Leu/Ile-&gt;Trp substitution.
Definition: cv.hpp:7652
MS_______E_E_
(?&lt;=[^E]E):
Definition: cv.hpp:6131
UNIMOD_3sulfo
3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.
Definition: cv.hpp:7988
UNIMOD_PyridoxalPhosphate
PyridoxalPhosphate: Pyridoxal phosphate.
Definition: cv.hpp:6560
MS_____K_
(?&lt;=K):
Definition: cv.hpp:4250
MS_confident_peptide_sequence_number
confident peptide sequence number: This counts the number of peptide sequences without regard to whet...
Definition: cv.hpp:3599
MS_Compass_OpenAccess
Compass OpenAccess: Bruker compass OpenAccess software.
Definition: cv.hpp:2654
MS_ProteomeDiscoverer_Mascot_Max_MGF_File_Size
ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in...
Definition: cv.hpp:5192
MS_ABI_WIFF_file
ABI WIFF file: Applied Biosystems WIFF file format.
Definition: cv.hpp:2135
MS_chromatogram_type
chromatogram type: Broad category or type of a chromatogram.
Definition: cv.hpp:2387
MS_ProteomeDiscoverer_Peptide_CTerminus
ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used duri...
Definition: cv.hpp:5282
MS_confidence_score
confidence score: Result of quality estimation: confidence score.
Definition: cv.hpp:3854
UNIMOD_Delta_H_2_C_2_
Delta:H(2)C(2): Acetaldehyde +26.
Definition: cv.hpp:6881
UNIMOD_Met__Trp
Met-&gt;Trp: Met-&gt;Trp substitution.
Definition: cv.hpp:8807
MS_external_reference_identifier
external reference identifier: An identifier/accession number to an external reference database...
Definition: cv.hpp:3176
MS_multiple_ion_monitoring_spectrum
multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spect...
Definition: cv.hpp:2225
UNIMOD_Glu__Ala
Glu-&gt;Ala: Glu-&gt;Ala substitution.
Definition: cv.hpp:7544
UNIMOD_SUMO2135
SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.
Definition: cv.hpp:8306
MS_instrument_attribute
instrument attribute: Instrument properties that are associated with a value.
Definition: cv.hpp:1931
MS_scanning_method
scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experimen...
Definition: cv.hpp:152
UNIMOD_Arg__Gln
Arg-&gt;Gln: Arg-&gt;Gln substitution.
Definition: cv.hpp:7766
MS_gas_laser
gas laser: Laser which is powered by a gaseous medium.
Definition: cv.hpp:3086
MS_staphylococcal_protease
staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3...
Definition: cv.hpp:6002
MS_spectral_counting_quantitation_analysis
spectral counting quantitation analysis: Spectral counting workflow (number of identified MS/MS spect...
Definition: cv.hpp:5756
MS_matrix_solution_concentration
matrix solution concentration: Concentration of the chemical solution used as matrix.
Definition: cv.hpp:3041
UNIMOD_2HPG
2HPG: Bis(hydroxphenylglyoxal) arginine.
Definition: cv.hpp:6818
MS_flow_injection_analysis
flow injection analysis: Sample is directly injected or infused into the ionization source...
Definition: cv.hpp:284
MS_direct_insertion_probe
direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer io...
Definition: cv.hpp:1022
MS_ProteomeDiscoverer_Total_Intensity_Threshold
ProteomeDiscoverer:Total Intensity Threshold: Used to filter out tandem mass spectra that have a tota...
Definition: cv.hpp:5093
MS_MAT253
MAT253: ThermoFinnigan MAT253 MS.
Definition: cv.hpp:716
MS_SIFT
SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier ...
Definition: cv.hpp:1226
UNIMOD_Hydroxyfarnesyl
Hydroxyfarnesyl: Hydroxyfarnesyl.
Definition: cv.hpp:7142
MS_nanoACQUITY_UPLC_with_HDX_Technology
nanoACQUITY UPLC with HDX Technology: Waters LC-system.
Definition: cv.hpp:5552
MS_frag__internal_ya_ion
frag: internal ya ion:
Definition: cv.hpp:4340
MS_Xevo_Q_Tof
Xevo Q-Tof: Waters oa-ToF based.
Definition: cv.hpp:5603
UNIMOD_Val__Gly
Val-&gt;Gly: Val-&gt;Gly substitution.
Definition: cv.hpp:7856
UNIMOD_Glucosylgalactosyl
Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.
Definition: cv.hpp:7184
MS_decoy_DB_from_IPI_human
decoy DB from IPI_human:
Definition: cv.hpp:4142
MS_number_of_peaks_used
number of peaks used: The number of peaks from the original peak list that are used to calculate the ...
Definition: cv.hpp:3668
UNIMOD_Phospho
Phospho: Phosphorylation.
Definition: cv.hpp:6497
MS_HCTultra_PTM
HCTultra PTM: Bruker Daltonics&#39; HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.
Definition: cv.hpp:2606
MS_surface_ionization
surface ionization: The ionization of a neutral species when it interacts with a solid surface with a...
Definition: cv.hpp:1631
UNIMOD_Met__Phe
Met-&gt;Phe: Met-&gt;Phe substitution.
Definition: cv.hpp:8786
MS_Sciex_API_III_file
Sciex API III file:
Definition: cv.hpp:4007
UO_volumetric_flow_rate_unit
volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes thr...
Definition: cv.hpp:10103
MS_6120_Quadrupole_LC_MS
6120 Quadrupole LC/MS: The 6120 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1844
MS_source_sprayer_model
source sprayer model: The source sprayer model.
Definition: cv.hpp:6059
MS_SQID_score
SQID:score: The SQID result &#39;Score&#39;.
Definition: cv.hpp:5909
MS_desorption_ionization
desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporiza...
Definition: cv.hpp:1016
UNIMOD_Thyroxine
Thyroxine: Tetraiodo.
Definition: cv.hpp:7199
MS_charge_inversion_mass_spectrum
charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a ...
Definition: cv.hpp:1367
UO_ug_disk
ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/conta...
Definition: cv.hpp:10124
MS_ChromaTOF_HRT_software
ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instrument...
Definition: cv.hpp:5879
MS_Shimadzu_Biotech_nativeID_format
Shimadzu Biotech nativeID format: source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeI...
Definition: cv.hpp:3335
MS_IE
IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to...
Definition: cv.hpp:887
MS_Progenesis_protein_normalised_abundance
Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by ...
Definition: cv.hpp:5918
UO_picometer
picometer: A length unit which is equal to 10^[-12] m.
Definition: cv.hpp:9359
MS_Expect_value
Expect value: Result of quality estimation: Expect value.
Definition: cv.hpp:3851
MS_TEMPUS_TOF
TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.
Definition: cv.hpp:788
UNIMOD_Ser__Lys
Ser-&gt;Lys: Ser-&gt;Lys substitution.
Definition: cv.hpp:8945
MS_charge_inversion_reaction
charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the produ...
Definition: cv.hpp:1655
MS_Pegasus_HRT
Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.
Definition: cv.hpp:5651
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Selection
ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for ...
Definition: cv.hpp:5084
UO_mass_percentage
mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixtur...
Definition: cv.hpp:9782
UNIMOD_Label_13C_9_
Label:13C(9): 13C(9) Silac label.
Definition: cv.hpp:6809
MS_report_only_spectra_assigned_to_identified_proteins
report only spectra assigned to identified proteins: .
Definition: cv.hpp:4955
MS_Sequest_OutputLines
Sequest:OutputLines:
Definition: cv.hpp:3362
MS_micrOTOFcontrol
micrOTOFcontrol: Bruker software for data acquisition.
Definition: cv.hpp:2687
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr para...
Definition: cv.hpp:5375
UNIMOD_Phe__Xle
Phe-&gt;Xle: Phe-&gt;Leu/Ile substitution.
Definition: cv.hpp:7568
UO_substance_unit
substance unit: A unit which is a standardised quantity of an element or compound with uniform compos...
Definition: cv.hpp:9317
UNIMOD_FMN
FMN: O3-(riboflavin phosphoryl).
Definition: cv.hpp:7310
PWIZ_API_DECL bool operator==(const TruncatedLorentzianParameters &t, const TruncatedLorentzianParameters &u)
UNIMOD_Dethiomethyl
Dethiomethyl: Prompt loss of side chain from oxidised Met.
Definition: cv.hpp:7445
MS_micrOTOF_Q_II
micrOTOF-Q II: Bruker Daltonics&#39; micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI. ...
Definition: cv.hpp:2621
MS_QIT
QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional...
Definition: cv.hpp:383
MS_ACQUITY_UPLC_H_Class
ACQUITY UPLC H-Class: Waters LC-system.
Definition: cv.hpp:5534
MS_PEFF_format
PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format...
Definition: cv.hpp:4619
MS_ion_trap
ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combin...
Definition: cv.hpp:1118
MS_Formic_acid
Formic_acid:
Definition: cv.hpp:4169
MS_autoflex_II
autoflex II: Bruker Daltonics&#39; autoflex II: MALDI TOF.
Definition: cv.hpp:644
MS_6410_Triple_Quadrupole_LC_MS
6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:1868
UO_meter
meter: A length unit which is equal to the length of the path traveled by light in vacuum during a ti...
Definition: cv.hpp:9323
UO_watt_hour
watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt ...
Definition: cv.hpp:9962
MS_product_ion_m_z
product ion m/z: The m/z of the product ion.
Definition: cv.hpp:3941
MS_SSQ_7000
SSQ 7000: ThermoFinnigan SSQ 7000 MS.
Definition: cv.hpp:2753
UNIMOD_3_deoxyglucosone
3-deoxyglucosone: Condensation product of 3-deoxyglucosone.
Definition: cv.hpp:8273
MS_modification_parameters
modification parameters: Modification parameters for the search engine run.
Definition: cv.hpp:3488
MS_MaxQuant_PTM_Score
MaxQuant:PTM Score: The PTM score from MaxQuant software.
Definition: cv.hpp:6197
MS_proton_affinity
proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change...
Definition: cv.hpp:938
MS_4800_Plus_MALDI_TOF_TOF
4800 Plus MALDI TOF/TOF: AB SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer...
Definition: cv.hpp:2468
MS_spectrum_title_OBSOLETE
spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from diff...
Definition: cv.hpp:4481
MS_protein_ratio
protein ratio: Protein ratio.
Definition: cv.hpp:3701
UNIMOD_Label_13C_4__Oxidation
Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.
Definition: cv.hpp:9143
MS_partial_charge_transfer_reaction
partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all...
Definition: cv.hpp:1730
MS_Pegasus
Pegasus: LECO GC time-of-flight mass spectrometer.
Definition: cv.hpp:5657
UNIMOD_Trp__Hydroxykynurenin
Trp-&gt;Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.
Definition: cv.hpp:7082
MS_Thermo_nativeID_format
Thermo nativeID format: controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger sc...
Definition: cv.hpp:2816
MS_low_energy_collisions
low energy collisions: A collision between an ion and neutral species with translational energy appro...
Definition: cv.hpp:1712
MS_FAIMS
FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two ...
Definition: cv.hpp:1073
MS_decoy_MRM_transition
decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample an...
Definition: cv.hpp:6296
UNIMOD_Gln__Cys
Gln-&gt;Cys: Gln-&gt;Cys substitution.
Definition: cv.hpp:8882
UNIMOD_Tyr__Ala
Tyr-&gt;Ala: Tyr-&gt;Ala substitution.
Definition: cv.hpp:9059
MS_ProteomeDiscoverer_Mascot_Error_tolerant_Search
ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.
Definition: cv.hpp:5189
UNIMOD_Val__Xle
Val-&gt;Xle: Val-&gt;Leu/Ile substitution.
Definition: cv.hpp:7853
MS_pulse_duration
pulse duration: Describes how long the laser beam was emitted from the laser device.
Definition: cv.hpp:3077
MS_charge_stripping
charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal...
Definition: cv.hpp:1004
UNIMOD_BHTOH
BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.
Definition: cv.hpp:7388
UO_picomole
picomole: A substance unit equal to 10^[-12] mol.
Definition: cv.hpp:9425
MS_M_LDI_LR
M LR: Waters MALDI LR MS.
Definition: cv.hpp:713
UNIMOD_ISD_z_2_ion
ISD_z+2_ion: ISD (z+2)-series.
Definition: cv.hpp:8354
MS_MS_MS
MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically c...
Definition: cv.hpp:1154
UO_frequency_unit
frequency unit: A unit which is a standard measure of the number of repetitive actions in a particula...
Definition: cv.hpp:9614
UNIMOD_Hex_2_
Hex(2): Lactosylation.
Definition: cv.hpp:7415
MS_Sequest_SelectDefault
Sequest:SelectDefault:
Definition: cv.hpp:3731
MS_constant_neutral_gain_scan
constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment...
Definition: cv.hpp:1373
MS_MS_GF_RawScore
MS-GF:RawScore: MS-GF raw score.
Definition: cv.hpp:6425
MS_reporter_ion_raw_value
reporter ion raw value: Intensity (or area) of MS/MS reporter ion (e.g. iTraq).
Definition: cv.hpp:5816
UO_unit_per_milliliter
unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amo...
Definition: cv.hpp:9827
MS_Proteinscape_spectra
Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.
Definition: cv.hpp:4820
MS_sample_plate
sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.
Definition: cv.hpp:6062
MS_Progenesis_feature_intensity
Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS...
Definition: cv.hpp:5936
MS_TOFCalibration
TOFCalibration: Applies time of flight calibration.
Definition: cv.hpp:2807
UNIMOD_Cys__Asp
Cys-&gt;Asp: Cys-&gt;Asp substitution.
Definition: cv.hpp:8519
UNIMOD_His__Arg
His-&gt;Arg: His-&gt;Arg substitution.
Definition: cv.hpp:7610
MS_single_peak_list_nativeID_format
single peak list nativeID format: file=xsd:IDREF.
Definition: cv.hpp:2837
UNIMOD_Cys__Val
Cys-&gt;Val: Cys-&gt;Val substitution.
Definition: cv.hpp:8549
UO_electric_field_strength_unit
electric field strength unit: The electric field strength is a unit which is a measure of the potenti...
Definition: cv.hpp:10094
MS_NCBI___p_
NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.
Definition: cv.hpp:4292
UNIMOD_His__Tyr
His-&gt;Tyr: His-&gt;Tyr substitution.
Definition: cv.hpp:7604
MS_translation_start_codons
translation start codons: The translation start codons used to translate the nucleotides to amino aci...
Definition: cv.hpp:4463
MS_quadrupole_ion_trap
quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion t...
Definition: cv.hpp:377
MS_ultraflex_III_TOF_TOF
ultraflex III TOF/TOF: Bruker Daltonics&#39; ultraflex III TOF/TOF: MALDI TOF.
Definition: cv.hpp:2624
MS_BioTools
BioTools: Bruker software for data analysis.
Definition: cv.hpp:2630
MS_MSFit_Mowse_score
MSFit:Mowse score: The MSFit Mowse score.
Definition: cv.hpp:4742
MS_param__a_ion_NH3
param: a ion-NH3:
Definition: cv.hpp:3737
MS_ion_kinetic_energy_spectrometry
ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according ...
Definition: cv.hpp:1094
MS_Sequest_SequenceHeaderFilter
Sequest:SequenceHeaderFilter:
Definition: cv.hpp:3422
UNIMOD_Asp__Thr
Asp-&gt;Thr: Asp-&gt;Thr substitution.
Definition: cv.hpp:8579
MS_BaselineFilter
BaselineFilter: Removes the baseline from profile spectra using a top-hat filter. ...
Definition: cv.hpp:2768
MS_multiphoton_ionization
multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are ab...
Definition: cv.hpp:917
MS_NA_sequence
NA sequence: The sequence is a nucleic acid sequence.
Definition: cv.hpp:4271
MS_ProteomeDiscoverer_Mascot_Please_Do_not_Touch_this
ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer...
Definition: cv.hpp:5510
MS_microTOF_LC
microTOF LC: Bruker Daltonics&#39; microTOF LC: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:734
MS_ionization_mode_OBSOLETE
ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer...
Definition: cv.hpp:119
MS_GENOLINK
GENOLINK: Bruker GENOLINK software.
Definition: cv.hpp:2678
UNIMOD_ExacTagThiol
ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.
Definition: cv.hpp:7967
UNIMOD_UgiJoullieProGly
UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.
Definition: cv.hpp:9167
MS_Phenyx_MaxPepPvalue
Phenyx:MaxPepPvalue:
Definition: cv.hpp:4397
MS_LCMS_IT_TOF
LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.
Definition: cv.hpp:2312
MS_intensity_normalization
intensity normalization: Normalization of data point intensities.
Definition: cv.hpp:4691
UO_luminous_intensity_unit
luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted ...
Definition: cv.hpp:9320
MS_data_processing_parameter
data processing parameter: Data processing parameter used in the data processing performed on the dat...
Definition: cv.hpp:2402
MS_ProteinExtractor_MaxNumberOfProteins
ProteinExtractor:MaxNumberOfProteins:
Definition: cv.hpp:4514
MS_axial_ejection_linear_ion_trap
axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the ...
Definition: cv.hpp:362
MS_detector_acquisition_mode
detector acquisition mode: Method by which detector signal is acquired by the data system...
Definition: cv.hpp:176
MS_quadrupole
quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of...
Definition: cv.hpp:374
UNIMOD_Gln__pyro_Glu
Gln-&gt;pyro-Glu: Pyro-glu from Q.
Definition: cv.hpp:6515
UNIMOD_Arg__Glu
Arg-&gt;Glu: Arg-&gt;Glu substitution.
Definition: cv.hpp:8921
UNIMOD_Formyl
Formyl: Formylation.
Definition: cv.hpp:6683
UNIMOD_Ub_fluorescein
Ub-fluorescein: Ub Fluorescein probe addition.
Definition: cv.hpp:9128
MS_chemi_ionization
chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an i...
Definition: cv.hpp:1571
MS_includes_supersede_excludes
includes supersede excludes: A priority setting specifying that included targets have priority over t...
Definition: cv.hpp:3308
MS_Phenyx_Scoring_Model
Phenyx:Scoring Model:
Definition: cv.hpp:4370
MS_ProteomeDiscoverer_Minimum_Peak_Count
ProteomeDiscoverer:Minimum Peak Count: Minimum number of peaks in a tandem mass spectrum that is allo...
Definition: cv.hpp:5075
MS_6330_Ion_Trap_LC_MS
6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1862
MS_tandem_mass_spectrometer
tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry...
Definition: cv.hpp:1307
UNIMOD_dichlorination
dichlorination: Dichlorination.
Definition: cv.hpp:8240
UNIMOD_Bacillosamine
Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.
Definition: cv.hpp:8198
UO_newton_per_meter
newton per meter: A surface tension unit which is equal to one newton per meter.
Definition: cv.hpp:10055
UO_catalytic__activity__concentration_unit
catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amou...
Definition: cv.hpp:9899
MS_LTQ_Orbitrap_Velos
LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.
Definition: cv.hpp:5474
MS_ITQ_1100
ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.
Definition: cv.hpp:2423
UNIMOD_Gluconoylation
Gluconoylation: Gluconoylation.
Definition: cv.hpp:9290
MS_cleavage_agent_details
cleavage agent details: Details of cleavage agent (enzyme).
Definition: cv.hpp:3458
MS_beta_cleavage
beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the...
Definition: cv.hpp:1646
MS_GPS_Explorer
GPS Explorer: AB SCIEX or Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2492
MS_multiple_peak_list_nativeID_format
multiple peak list nativeID format: index=xsd:nonNegativeInteger.
Definition: cv.hpp:2834
UNIMOD_IDEnT
IDEnT: Isotope Distribution Encoded Tag.
Definition: cv.hpp:7997
UNIMOD_Trp__Cys
Trp-&gt;Cys: Trp-&gt;Cys substitution.
Definition: cv.hpp:7862
MS_Phenyx_AC
Phenyx:AC:
Definition: cv.hpp:4406
UO_kilogram_per_meter
kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided...
Definition: cv.hpp:9845
MS_MSQuant
MSQuant: MSQuant software.
Definition: cv.hpp:6191
MS_DB_filter_on_accession_numbers
DB filter on accession numbers: Filtering applied specifically by accession number pattern...
Definition: cv.hpp:3401
MS_SEND
SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the mat...
Definition: cv.hpp:1214
MS_customization
customization: Free text description of a single customization made to the instrument; for several mo...
Definition: cv.hpp:191
MS_molecular_formula
molecular formula: A chemical compound formula expressing the number of atoms of each element present...
Definition: cv.hpp:3140
MS_MS_GF_EValue
MS-GF:EValue: MS-GF E-value.
Definition: cv.hpp:6437
UNIMOD_Methyl_PEO12_Maleimide
Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.
Definition: cv.hpp:8150
UNIMOD_LG_Hlactam_K
LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.
Definition: cv.hpp:7403
UO_volt_per_meter
volt per meter: The volt per meter is a unit of electric field strength equal to the a potential diff...
Definition: cv.hpp:10097
MS_collision_gas_pressure
collision gas pressure: The gas pressure of the collision gas used for collisional excitation...
Definition: cv.hpp:3149
MS_XCMS
XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data...
Definition: cv.hpp:4982
MS_transition_optimized_on_specified_instrument
transition optimized on specified instrument: The transition has been optimized by direct injection o...
Definition: cv.hpp:3278
UO_electronvolt
electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electro...
Definition: cv.hpp:10091
UNIMOD_SMCC_maleimide
SMCC-maleimide: Modified SMCC maleimide with 3-(dimethylamino)-1-propylamine.
Definition: cv.hpp:8195
UNIMOD_cGMP_RMP_loss
cGMP+RMP-loss: S-guanylation-2.
Definition: cv.hpp:8093
MS_MIDAS_Workflow_Designer
MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.
Definition: cv.hpp:2528
MS_MALDI_Synapt_G2_HDMS
MALDI Synapt G2 HDMS: Waters oa-ToF based.
Definition: cv.hpp:5561
MS_Xcalibur
Xcalibur: Thermo Finnigan software for data acquisition and analysis.
Definition: cv.hpp:2042
UNIMOD_Propionamide
Propionamide: Acrylamide adduct.
Definition: cv.hpp:6503
MS_ClinProTools
ClinProTools: Bruker ClinProTools software.
Definition: cv.hpp:2642
UO_viscosity_unit
viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow...
Definition: cv.hpp:10061
UNIMOD_Carboxy__Thiocarboxy
Carboxy-&gt;Thiocarboxy: Thiocarboxylic acid.
Definition: cv.hpp:7253
MS_Surveyor_MSQ
Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.
Definition: cv.hpp:779
UNIMOD_Propyl
Propyl: Propyl.
Definition: cv.hpp:9224
MS_Paragon_expression_error_factor
Paragon:expression error factor: The Paragon result &#39;Expression Error Factor&#39;.
Definition: cv.hpp:3803
MS_association_reaction
association reaction: The reaction of an ion with a neutral species in which the reactants combine to...
Definition: cv.hpp:1640
MS_Sequest_PeptideIdnumber
Sequest:PeptideIdnumber: The SEQUEST result &#39;Id#&#39; in out file (peptide).
Definition: cv.hpp:3923
MS_peak_area_OBSOLETE
peak area: Area of MS1 peak (e.g. SILAC, 15N).
Definition: cv.hpp:5783
UO_normal
normal: A unit of concentration which is one gram equivalent of a solute per liter of solution...
Definition: cv.hpp:9524
UNIMOD_Hex_1_HexNAc_2_dHex_1_
Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.
Definition: cv.hpp:6761
UNIMOD_PyruvicAcidIminyl
PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.
Definition: cv.hpp:7259
MS_ProteomeDiscoverer_Mascot_Weight_of_D_Ions
ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching...
Definition: cv.hpp:5486
UNIMOD_Cys__Gln
Cys-&gt;Gln: Cys-&gt;Gln substitution.
Definition: cv.hpp:8543
MS_ProteomeDiscoverer_Mascot_Taxonomy_OBSOLETE
ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of ...
Definition: cv.hpp:5243
MS_ProteinScape
ProteinScape: Bruker ProteinScape software.
Definition: cv.hpp:2711
MS_6130_Quadrupole_LC_MS
6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1847
MS_API_2000
API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.
Definition: cv.hpp:635
UO_candela_per_square_meter
candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radi...
Definition: cv.hpp:9554
MS_ProteomeDiscoverer_MS_Order_OBSOLETE
ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS/MS=MS2 ... MS10).
Definition: cv.hpp:5078
UNIMOD_Label_18O_1_
Label:18O(1): O18 Labeling.
Definition: cv.hpp:6890
MS_dissociation_method
dissociation method: Fragmentation method used for dissociation or fragmentation. ...
Definition: cv.hpp:239
UO_nanovolt
nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12]...
Definition: cv.hpp:10043
UO_ampere
ampere: An electric current unit which is equal to the constant current which, if maintained in two s...
Definition: cv.hpp:9332
MS_IdentityE_Score
IdentityE Score: Waters IdentityE peptide score.
Definition: cv.hpp:4940
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Only_Known_Masses
ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks ar...
Definition: cv.hpp:5126
UNIMOD_Diethyl
Diethyl: Diethylation, analogous to Dimethylation.
Definition: cv.hpp:7427
MS_ProteomeDiscoverer_SEQUEST_Calculate_Probability_Score
ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability...
Definition: cv.hpp:5255
UNIMOD_Val__Thr
Val-&gt;Thr: Val-&gt;Thr substitution.
Definition: cv.hpp:9011
UNIMOD_Asp__Lys
Asp-&gt;Lys: Asp-&gt;Lys substitution.
Definition: cv.hpp:8561
MS_EI_OBSOLETE
EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically acc...
Definition: cv.hpp:335
MS_PSD
PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where p...
Definition: cv.hpp:599
MS_frag__z_ion___NH3
frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.
Definition: cv.hpp:4793
UNIMOD_Ser__Cys
Ser-&gt;Cys: Ser-&gt;Cys substitution.
Definition: cv.hpp:7802
UNIMOD_Thr__Pro
Thr-&gt;Pro: Thr-&gt;Pro substitution.
Definition: cv.hpp:7826
MS_E_value_for_peptides
E-value for peptides: Peptide identification confidence metric E-value.
Definition: cv.hpp:5864
UO_milliliter_per_liter
milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of sol...
Definition: cv.hpp:9914
UNIMOD_Xlink_SSD
Xlink:SSD: Covalent modification of lysine by cross-linking reagent.
Definition: cv.hpp:6926
MS_Paragon_total_protscore
Paragon:total protscore: The Paragon result &#39;Total ProtScore&#39;.
Definition: cv.hpp:3794
MS_leukocyte_elastase
leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).
Definition: cv.hpp:5993
MS_ProteomeDiscoverer_Mass_Analyzer_OBSOLETE
ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS).
Definition: cv.hpp:5066
MS_Mascot_total_ions
Mascot:total ions: The Mascot result &#39;Total ions&#39;.
Definition: cv.hpp:3821
MS_CompassXtract
CompassXtract: Bruker software library for data access.
Definition: cv.hpp:2663
MS_peptide_PSM_count
peptide PSM count: The number of MS/MS spectra identified for this peptide in spectral counting...
Definition: cv.hpp:5774
MS_static_supply_electrospray
static supply electrospray: The sprayer is loaded with sample once.
Definition: cv.hpp:6077
MS_solid
solid: State if the sample is in solid form.
Definition: cv.hpp:257
UNIMOD_Pro__Ser
Pro-&gt;Ser: Pro-&gt;Ser substitution.
Definition: cv.hpp:7709
MS_ProteomeDiscoverer_Mascot_Weight_of_Y_Ions
ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching...
Definition: cv.hpp:5498
MS_precursor_activation
precursor activation: Terms to describe the precursor activation.
Definition: cv.hpp:1799
MS_electrospray_inlet
electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization sour...
Definition: cv.hpp:281
MS_PEAKS_Studio
PEAKS Studio: PEAKS Studio software for data analysis.
Definition: cv.hpp:6092
MS_flow_rate_array
flow rate array: A data array of flow rate measurements.
Definition: cv.hpp:2999
UNIMOD_Gly__Pro
Gly-&gt;Pro: Gly-&gt;Pro substitution.
Definition: cv.hpp:8678
MS_SILACAnalyzer
SILACAnalyzer: Software for SILAC workflow.
Definition: cv.hpp:5741
MS_Bruker_BAF_file
Bruker BAF file: Bruker BAF raw file format.
Definition: cv.hpp:2984
MS_TissueView_Software
TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.
Definition: cv.hpp:2501
UO_watt_per_square_meter
watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one ...
Definition: cv.hpp:9758
MS_unit
unit: Terms to describe units.
Definition: cv.hpp:1814
MS_MGF_scans_OBSOLETE
MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute...
Definition: cv.hpp:4475
MS_selected_ion_monitoring_chromatogram
selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements o...
Definition: cv.hpp:4646
MS_isotope_dilution_mass_spectrometry
isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopical...
Definition: cv.hpp:890
MS_SIM_chromatogram
SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of...
Definition: cv.hpp:4649
MS_ProteinExtractor_UseSequest
ProteinExtractor:UseSequest:
Definition: cv.hpp:4538
UNIMOD_dHex_1_Hex_3_HexNAc_4_
dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).
Definition: cv.hpp:6992
MS_atmospheric_pressure_ionization
atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at ...
Definition: cv.hpp:974
UNIMOD_Phe__Asp
Phe-&gt;Asp: Phe-&gt;Asp substitution.
Definition: cv.hpp:8624
MS_DB_MW_filter_minimum
DB MW filter minimum:
Definition: cv.hpp:3881
MS_glutamyl_endopeptidase
glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).
Definition: cv.hpp:5999
MS_E_value_for_proteins
E-value for proteins: Protein identification confidence metric E-value.
Definition: cv.hpp:5867
MS_crushed_crystal_MALDI_sample_preparation
crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method...
Definition: cv.hpp:6224
MS_analyzer_scan_offset
analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan...
Definition: cv.hpp:2942
MS_moving_average_smoothing
moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent ...
Definition: cv.hpp:2873
UNIMOD_TMT6plex
TMT6plex: Sixplex Tandem Mass Tag®.
Definition: cv.hpp:7958
UO_pascal
pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 ...
Definition: cv.hpp:9629
UNIMOD_Gln__Trp
Gln-&gt;Trp: Gln-&gt;Trp substitution.
Definition: cv.hpp:8909
UNIMOD_Pro__His
Pro-&gt;His: Pro-&gt;His substitution.
Definition: cv.hpp:7715
MS_Synapt_G2_MS
Synapt G2 MS: Waters oa-ToF based.
Definition: cv.hpp:5582
MS_ProteomeDiscoverer_Xtract_Required_Fitting_Accuracy
ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be consid...
Definition: cv.hpp:5165
MS_ion_optics_attribute
ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry...
Definition: cv.hpp:1901
MS_EIEIO
EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the...
Definition: cv.hpp:1049
MS_MaxQuant_LFQ_intensity
MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.
Definition: cv.hpp:5954
MS_Protein_Inference_Confidence_Category
Protein Inference Confidence Category: Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable).
Definition: cv.hpp:5048
MS_activation
activation (precursor activation): Terms to describe the precursor activation.
Definition: cv.hpp:1802
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5399
MS______EZ_____P_
(?&lt;=[EZ])(?!P):
Definition: cv.hpp:4265
MS_PI
PI (photoionization): The ionization of an atom or molecule by a photon, written M + h...
Definition: cv.hpp:1178
MS_protein_accession
protein accession: Accession number for a specific protein in a database.
Definition: cv.hpp:3197
MS_GC_Quantum
GC Quantum: GC Quantum.
Definition: cv.hpp:2123
UNIMOD_DTT_ST_2H_6_
DTT_ST:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of serines or threonines...
Definition: cv.hpp:8000
MS_two_sample_run
two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labeling)...
Definition: cv.hpp:5705
UNIMOD_Pro__Gln
Pro-&gt;Gln: Pro-&gt;Gln substitution.
Definition: cv.hpp:7718
UNIMOD_Val__Asp
Val-&gt;Asp: Val-&gt;Asp substitution.
Definition: cv.hpp:7850
MS_MALDI_Solutions_Microbial_Identification
MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition, processing, and analysis.
Definition: cv.hpp:5882
MS_instrument_additional_description
instrument additional description: Additional terms to describe the instrument as outlined in the mas...
Definition: cv.hpp:1793
MS_dalton_OBSOLETE
dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1...
Definition: cv.hpp:854
UNIMOD_Delta_Se_1_
Delta:Se(1): Selenyl.
Definition: cv.hpp:7262
MS_PinPoint
PinPoint: Thermo Scientific PinPoint SRM analysis software.
Definition: cv.hpp:5984
MS_focus_diameter_y
focus diameter y: Describes the diameter of the laser beam in y direction.
Definition: cv.hpp:3071
MS_HyStar
HyStar: Bruker software for hyphenated experiments.
Definition: cv.hpp:2990
MS_TagRecon_mzFidelity
TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks...
Definition: cv.hpp:5018
MS_TOF
TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration...
Definition: cv.hpp:395
MS_search_type
search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS-MS).
Definition: cv.hpp:3539
MS_reaction
reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z ...
Definition: cv.hpp:3272
UNIMOD_Amidino
Amidino: Amidino.
Definition: cv.hpp:7307
MS_Proteios
Proteios: Database application and analysis platform for proteomics.
Definition: cv.hpp:2300
UNIMOD_DTBP
DTBP: Dimethyl 3,3\&#39;-dithiobispropionimidate.
Definition: cv.hpp:7034
UNIMOD_Met__Gln
Met-&gt;Gln: Met-&gt;Gln substitution.
Definition: cv.hpp:8801
MS_TRACE_DSQ
TRACE DSQ: ThermoFinnigan TRACE DSQ MS.
Definition: cv.hpp:791
MS_Multiple_Ion_Monitoring
Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the ...
Definition: cv.hpp:818
UO_microgram
microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
Definition: cv.hpp:9368
MS_ProteomeDiscoverer_Mascot_Weight_of_X_Ions
ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching...
Definition: cv.hpp:5495
MS_transient_recorder
transient recorder: A detector acquisition mode used for detecting transient signals.
Definition: cv.hpp:530
UNIMOD_Propyl_2H_6_
Propyl:2H(6): Propyl:2H(6).
Definition: cv.hpp:9227
MS_reflectron_off
reflectron off: Reflectron is off.
Definition: cv.hpp:464
UNIMOD_Heme
Heme: Heme.
Definition: cv.hpp:7175
UNIMOD_DyLight_maleimide
DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.
Definition: cv.hpp:8147
MS_ITQ_900
ITQ 900: Thermo Scientific ITQ 900 GC-MS.
Definition: cv.hpp:2420
MS_onium_ion
onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methoni...
Definition: cv.hpp:1529
MS_enium_ion
enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is C...
Definition: cv.hpp:1502
MS_charge_deconvolution
charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that r...
Definition: cv.hpp:197
MS_MRMPilot_Software
MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.
Definition: cv.hpp:2507
MS_scan_rate
scan rate: Rate in Th/sec for scanning analyzers.
Definition: cv.hpp:137
UNIMOD_Carbamidomethyl
Carbamidomethyl: Iodoacetamide derivative.
Definition: cv.hpp:6461
UNIMOD_ICAT_D
ICAT-D: Applied Biosystems original ICAT(TM) d0.
Definition: cv.hpp:6488
UO_deciliter
deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.
Definition: cv.hpp:9920
UNIMOD_Tyr__Met
Tyr-&gt;Met: Tyr-&gt;Met substitution.
Definition: cv.hpp:9071
MS_tab_delimited_text_file
tab delimited text file: A file that has two or more columns of tabular data where each column is sep...
Definition: cv.hpp:3290
UO_millimolar
millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M...
Definition: cv.hpp:9488
MS_ProteinProspector_score
ProteinProspector:score: The ProteinProspector result &#39;Score&#39;.
Definition: cv.hpp:6410
UNIMOD_Label_15N_2_
Label:15N(2): 15N(2).
Definition: cv.hpp:8363
MS_Bruker_XML_file
Bruker XML file: Bruker data exchange xml.
Definition: cv.hpp:4010
MS_AXIMA_Confidence_MALDI_TOF
AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS...
Definition: cv.hpp:2333
MS_contact_name
contact name: Name of the contact person or organization.
Definition: cv.hpp:2249
MS_Feature_attribute
Feature attribute: Attribute describing a Feature.
Definition: cv.hpp:5732
MS_Mascot_matched_ions
Mascot:matched ions: The Mascot result &#39;Matched ions&#39;.
Definition: cv.hpp:3818
UO_gram_per_mole
gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element o...
Definition: cv.hpp:9563
MS_focus_diameter_x
focus diameter x: Describes the diameter of the laser beam in x direction.
Definition: cv.hpp:3068
MS_Compass_for_HCT_esquire
Compass for HCT/esquire: Bruker Compass for HCT/esquire software.
Definition: cv.hpp:2648
UNIMOD_SecCarbamidomethyl
SecCarbamidomethyl: Sec Iodoacetamide derivative.
Definition: cv.hpp:8399
MS_laser_desorption_ionization
laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser wit...
Definition: cv.hpp:1592
MS_Percolator_features
Percolator:features: List of Percolator features that were used in processing the peptide matches...
Definition: cv.hpp:5528
UNIMOD_Label_2H_4__GlyGly
Label:2H(4)+GlyGly: Ubiquitination 2H4 lysine.
Definition: cv.hpp:8096
MS_ITQ_700
ITQ 700: Thermo Scientific ITQ 700 GC-MS.
Definition: cv.hpp:2417
MS_buffer_gas
buffer gas: An inert gas used for collisional deactivation of internally excited ions.
Definition: cv.hpp:1649
UNIMOD_Gln__Phe
Gln-&gt;Phe: Gln-&gt;Phe substitution.
Definition: cv.hpp:8888
MS_Synapt_HDMS
Synapt HDMS: Waters oa-ToF based.
Definition: cv.hpp:5591
MS_ZCore_probScore
ZCore:probScore: The ZCore probability score.
Definition: cv.hpp:6110
MS_SIM
SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of sever...
Definition: cv.hpp:821
UNIMOD_FMNC
FMNC: S-(4a-FMN).
Definition: cv.hpp:7313
std::string version
the version of the CV from which the referred-to terms are drawn.
Definition: cv.hpp:10168
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5396
UNIMOD_IodoU_AMP
IodoU-AMP: Cross-link of (Iodo)-uracil MP with W,F,Y.
Definition: cv.hpp:6965
UNIMOD_Ala__Thr
Ala-&gt;Thr: Ala-&gt;Thr substitution.
Definition: cv.hpp:7487
MS_time_series__time_point_X
time series, time point X: The experimental design followed a time series design. The time point of t...
Definition: cv.hpp:5693
MS_frag__precursor_ion___H2O
frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water...
Definition: cv.hpp:4802
MS_elution_time
elution time: The time of elution from a chromatographic column, relative to the start of the chromat...
Definition: cv.hpp:3017
MS_multiple_stage_mass_spectrometry_spectrum
multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS/MS experiments...
Definition: cv.hpp:2207
UNIMOD_Pro__Phe
Pro-&gt;Phe: Pro-&gt;Phe substitution.
Definition: cv.hpp:8855
UNIMOD_Trp__Asn
Trp-&gt;Asn: Trp-&gt;Asn substitution.
Definition: cv.hpp:9041
MS_API_150EX
API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.
Definition: cv.hpp:629
MS_PROTEINEER_fc
PROTEINEER fc: Bruker PROTEINEER fc software.
Definition: cv.hpp:2702
UNIMOD_Cytopiloyne_water
Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.
Definition: cv.hpp:6920
MS_MS_GF_DeNovoScore
MS-GF:DeNovoScore: MS-GF de novo score.
Definition: cv.hpp:6428
MS_product_ion_spectrum_OBSOLETE
product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z sep...
Definition: cv.hpp:1439
MS_quality_estimation_by_manual_validation
quality estimation by manual validation: The quality estimation was done manually.
Definition: cv.hpp:3497
MS_None_____OBSOLETE
None ??: None.
Definition: cv.hpp:461
MS_DELTA_plusAdvantage
DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.
Definition: cv.hpp:659
UNIMOD_Phe__Thr
Phe-&gt;Thr: Phe-&gt;Thr substitution.
Definition: cv.hpp:8654
UNIMOD_Delta_H_6_C_3_O_1_
Delta:H(6)C(3)O(1): Reduced acrolein addition +58.
Definition: cv.hpp:9233
UO_sievert
sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by ...
Definition: cv.hpp:9707
UO_microliters_per_minute
microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a...
Definition: cv.hpp:10106
UNIMOD_AHA_SS
AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.
Definition: cv.hpp:9095
UNIMOD_Ala__Cys
Ala-&gt;Cys: Ala-&gt;Cys substitution.
Definition: cv.hpp:8483
MS_non_classical_ion
non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation...
Definition: cv.hpp:1526
UNIMOD_Biotin_Invitrogen_M1602
Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.
Definition: cv.hpp:8408
MS_ProteinLynx_Log_Likelihood
ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.
Definition: cv.hpp:4943
UNIMOD_Asn__Gly
Asn-&gt;Gly: Asn-&gt;Gly substitution.
Definition: cv.hpp:8825
MS_database_IPI_zebrafish
database IPI_zebrafish:
Definition: cv.hpp:4103
MS_unknown_modification
unknown modification: This term should be given if the modification was unknown.
Definition: cv.hpp:4613
UNIMOD_Cytopiloyne
Cytopiloyne: Nucleophilic addtion to cytopiloyne.
Definition: cv.hpp:6917
MS_nanoACQUITY_UPLC
nanoACQUITY UPLC: Waters LC-system.
Definition: cv.hpp:5546
MS_einzel_lens
einzel lens: Three element charged particle lens in which the first and third elements are held at th...
Definition: cv.hpp:1322
MS_exact_mass
exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom...
Definition: cv.hpp:869
UNIMOD_Decanoyl
Decanoyl: Lipid.
Definition: cv.hpp:7328
UNIMOD_PEO_Iodoacetyl_LC_Biotin
PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
Definition: cv.hpp:6494
MS_peptide_group_label
peptide group label: An arbitrary string label used to mark a set of peptides that belong together in...
Definition: cv.hpp:3224
UNIMOD_Arg__Lys
Arg-&gt;Lys: Arg-&gt;Lys substitution.
Definition: cv.hpp:7760
MS_database_original_uri
database original uri: URI, from where the search database was originally downloaded.
Definition: cv.hpp:3383
MS_decoy_DB_from_IPI_zebrafish
decoy DB from IPI_zebrafish:
Definition: cv.hpp:4130
MS_PEAKS_peptideScore
PEAKS:peptideScore: The PEAKS peptide &#39;-10lgP Score&#39;.
Definition: cv.hpp:6104
MS_conversion_dynode
conversion dynode: A surface that is held at high potential such that ions striking the surface produ...
Definition: cv.hpp:1451
MS_LXQ
LXQ: Finnigan LXQ MS.
Definition: cv.hpp:1775
MS_ProteomeXchange_accession_number
ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.
Definition: cv.hpp:6011
MS_precursor_ion_spectrum
precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product...
Definition: cv.hpp:1433
UNIMOD_CLIP_TRAQ_4
CLIP_TRAQ_4: CLIP_TRAQ_4.
Definition: cv.hpp:7475
UO_kilogram
kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the ...
Definition: cv.hpp:9326
MS_atmospheric_pressure_matrix_assisted_laser_desorption_ionization
atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption io...
Definition: cv.hpp:968
MS_null_terminated_ASCII_string
null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a sing...
Definition: cv.hpp:4676
UNIMOD_Biotin_Thermo_33033
Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.
Definition: cv.hpp:9101
UNIMOD_EthylAmide
EthylAmide: Solvolysis of amide group on Asn or Gln by ethanol.
Definition: cv.hpp:8222
UNIMOD_Oxidation
Oxidation: Oxidation or Hydroxylation.
Definition: cv.hpp:6530
MS_resonance_ion_ejection
resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary ra...
Definition: cv.hpp:1355
MS_autoflex_III_TOF_TOF_smartbeam
autoflex III TOF/TOF smartbeam: Bruker Daltonics&#39; autoflex III TOF/TOF smartbeam: MALDI TOF...
Definition: cv.hpp:4895
MS_homolytic_cleavage
homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons...
Definition: cv.hpp:1685
MS_sample_plate_type
sample plate type: The sample plate type.
Definition: cv.hpp:6065
MS_MaxQuant_sequence_length
MaxQuant:sequence length: The data type sequence length produced by MaxQuant.
Definition: cv.hpp:5948
MS_isolation_window_upper_offset
isolation window upper offset: The extent of the isolation window in m/z above the isolation window t...
Definition: cv.hpp:3026
UO_kilovolt_hour
kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.
Definition: cv.hpp:9983
MS_lowest_observed_m_z
lowest observed m/z: Lowest m/z value observed in the m/z array.
Definition: cv.hpp:2030
MS_iTRAQ_quantitation_analysis
iTRAQ quantitation analysis: Quantification analysis using the AB SCIEX iTRAQ isobaric labeling workf...
Definition: cv.hpp:5759
MS_fragmentation_information
fragmentation information: Fragmentation information like ion types.
Definition: cv.hpp:3929
MS_database_type_nucleotide
database type nucleotide: Database contains nucleid acid sequences.
Definition: cv.hpp:3536
MS_Sequest_selectCV
Sequest:selectCV: Branch containing the CV terms for Sequest Select Input Parameters.
Definition: cv.hpp:3683
MS_peak_intensity_OBSOLETE
peak intensity: The height or area of a peak in a mass spectrum.
Definition: cv.hpp:935
UNIMOD_CLIP_TRAQ_2
CLIP_TRAQ_2: CLIP_TRAQ_2.
Definition: cv.hpp:7442
UNIMOD_MDCC
MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).
Definition: cv.hpp:8138
UNIMOD_Asp__Gln
Asp-&gt;Gln: Asp-&gt;Gln substitution.
Definition: cv.hpp:8570
MS_delta_M
delta M: The difference between a theoretically calculated molecular mass M and the corresponding exp...
Definition: cv.hpp:6185
UNIMOD_Dansyl
Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.
Definition: cv.hpp:6722
UO_time_unit
time unit: A unit which is a standard measure of the dimension in which events occur in sequence...
Definition: cv.hpp:9308
MS_electrospray_ionization
electrospray ionization: A process in which ionized species in the gas phase are produced from an ana...
Definition: cv.hpp:338
MS_6210_Time_of_Flight_LC_MS
6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition: cv.hpp:1853
MS_quality_estimation_with_implicite_decoy_sequences
quality estimation with implicite decoy sequences: Decoy entries are generated during the search...
Definition: cv.hpp:4595
UNIMOD_lapachenole
lapachenole: Lapachenole photochemically added to cysteine.
Definition: cv.hpp:8018
UNIMOD_Delta_H_8_C_6_O_2_
Delta:H(8)C(6)O(2): Acrolein addition +112.
Definition: cv.hpp:6860
MS_sequence_same_set_protein
sequence same-set protein: A protein which is indistinguishable or equivalent to another protein...
Definition: cv.hpp:5030
MS_second_OBSOLETE
second: Acquisition time in seconds.
Definition: cv.hpp:212
UNIMOD_Phe__Trp
Phe-&gt;Trp: Phe-&gt;Trp substitution.
Definition: cv.hpp:8657
MS_suspension
suspension: State if the sample is in suspension form.
Definition: cv.hpp:263
UNIMOD_HexNAc
HexNAc: N-Acetylhexosamine.
Definition: cv.hpp:6551
UNIMOD_AHA_Alkyne
AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).
Definition: cv.hpp:8375
MS_error_on_peptide_ratio
error on peptide ratio: Error on peptide ratio.
Definition: cv.hpp:3698
UNIMOD_His__Met
His-&gt;Met: His-&gt;Met substitution.
Definition: cv.hpp:8708
MS_experimental_condition__case_
experimental condition &#39;case&#39;: The experimental condition is &#39;case&#39; in contrast to &#39;control&#39;...
Definition: cv.hpp:5678
MS_cluster_ion
cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with...
Definition: cv.hpp:1487
UO_microliter
microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
Definition: cv.hpp:9602
MS_error_on_protein_ratio
error on protein ratio: Error on protein ratio.
Definition: cv.hpp:3704
MS_negative_ion_mode_OBSOLETE
negative ion mode: OBSOLETE.
Definition: cv.hpp:356
UNIMOD_Bromobimane
Bromobimane: Monobromobimane derivative.
Definition: cv.hpp:6983
MS_DSQ_II
DSQ II: Thermo Scientific DSQ II GC-MS.
Definition: cv.hpp:2435
MS_Sequest_sort_by_RSp
Sequest:sort_by_RSp:
Definition: cv.hpp:3500
MS_selected_ion_detection
selected ion detection: Please see Single Ion Monitoring.
Definition: cv.hpp:419
MS_PSI_mzData_file
PSI mzData file: Proteomics Standards Inititative mzData file format.
Definition: cv.hpp:2141
UO_nanomolal
nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m...
Definition: cv.hpp:9512
UO_megavolt
megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V...
Definition: cv.hpp:10049
UNIMOD_Arg__Cys
Arg-&gt;Cys: Arg-&gt;Cys substitution.
Definition: cv.hpp:7772
MS_smoothing
smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real p...
Definition: cv.hpp:2267
MS_electron_affinity
electron affinity: The electron affinity of M is the minimum energy required for the process M- ...
Definition: cv.hpp:860
MS_gas
gas: State if the sample is in gaseous form.
Definition: cv.hpp:251
MS_TMT_quantitation_analysis
TMT quantitation analysis: Quantitation analysis using the Thermo Fisher tandem mass tag (TMT) labeli...
Definition: cv.hpp:6302
UNIMOD_NEM_2H_5_
NEM:2H(5): D5 N-ethylmaleimide on cysteines.
Definition: cv.hpp:8033
UNIMOD_Label_13C_1_2H_3_
Label:13C(1)2H(3): SILAC.
Definition: cv.hpp:8111
MS_MS2_tag_based_feature_level_quantitation
MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.
Definition: cv.hpp:6347
MS_REMPI
REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cro...
Definition: cv.hpp:1196
MS_Conventional_ion
Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin a...
Definition: cv.hpp:1490
MS_EMR_radiation_chromatogram
EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnet...
Definition: cv.hpp:2972
MS_retention_time_window_attribute
retention time window attribute: An attribute of a window in time about which a peptide might elute f...
Definition: cv.hpp:3293
MS_native_spectrum_identifier_format
native spectrum identifier format: Describes how the native spectrum identifiers are formated...
Definition: cv.hpp:2810
MS_ProteomeXchange_accession_number_version_number
ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number...
Definition: cv.hpp:6014
UO_nanogram_per_milliliter
nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided...
Definition: cv.hpp:10118
UNIMOD_Gln__Ala
Gln-&gt;Ala: Gln-&gt;Ala substitution.
Definition: cv.hpp:8879
MS_blackbody_infrared_radiative_dissociation
blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherei...
Definition: cv.hpp:986
UNIMOD_Val__Tyr
Val-&gt;Tyr: Val-&gt;Tyr substitution.
Definition: cv.hpp:9017
MS_HCTplus
HCTplus: Bruker Daltonics&#39; HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:683
MS_Spark_Source_Mass_Spectrometry_OBSOLETE
Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.
Definition: cv.hpp:1235
MS_inlet_type
inlet type: The nature of the sample inlet.
Definition: cv.hpp:113
MS_DIP
DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrome...
Definition: cv.hpp:1025
MS_Bruker_Daltonics_maXis_series
Bruker Daltonics maXis series:
Definition: cv.hpp:4880
MS_e_2_mass_spectrum
e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric se...
Definition: cv.hpp:1394
UNIMOD_Xle__Tyr
Xle-&gt;Tyr: Leu/Ile-&gt;Tyr substitution.
Definition: cv.hpp:8738
MS_ProteomeDiscoverer_Spectrum_Selector_Upper_RT_Limit
ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.
Definition: cv.hpp:5111
MS_sample_concentration
sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used...
Definition: cv.hpp:110
UNIMOD_Asn__Xle
Asn-&gt;Xle: Asn-&gt;Leu/Ile substitution.
Definition: cv.hpp:7706
MS_TRIZAIC_UPLC_nanoTile
TRIZAIC UPLC nanoTile: Waters LC-system.
Definition: cv.hpp:5555
MS_vendor_OBSOLETE
vendor: Name of instrument vendor.
Definition: cv.hpp:185
MS_unspecific_cleavage
unspecific cleavage: Unspecific cleavage.
Definition: cv.hpp:6122
UNIMOD_Myristoleyl
Myristoleyl: (cis-delta 5)-tetradecaenoyl.
Definition: cv.hpp:6710
UNIMOD_Tyr__Asn
Tyr-&gt;Asn: Tyr-&gt;Asn substitution.
Definition: cv.hpp:7880
UNIMOD_Delta_H_4_C_2_O__1_S_1_
Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.
Definition: cv.hpp:7040
MS_ProteinExtractor_UseProteinSolver
ProteinExtractor:UseProteinSolver:
Definition: cv.hpp:4550
MS_MultiQuant
MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.
Definition: cv.hpp:2531
MS_field_desorption
field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the...
Definition: cv.hpp:1076
UNIMOD_HNE_Delta_H_2_
HNE+Delta:H(2): Reduced 4-Hydroxynonenal.
Definition: cv.hpp:7055
MS_pressure_array
pressure array: A data array of pressure measurements.
Definition: cv.hpp:3002
MS_open_split
open split: A division of flowing stream of liquid into two streams.
Definition: cv.hpp:305
MS_product_ion_series_ordinal
product ion series ordinal: The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion).
Definition: cv.hpp:3254
MS_CLINPROT_robot
CLINPROT robot: Bruker CLINPROT robot software.
Definition: cv.hpp:2639
MS_4000_Series_Explorer_Software
4000 Series Explorer Software: AB SCIEX or Applied Biosystems software for data acquisition and analy...
Definition: cv.hpp:2489
UNIMOD_FNEM
FNEM: Fluorescein-5-maleimide.
Definition: cv.hpp:7424
MS_Thermo_Finnigan_instrument_model
Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model...
Definition: cv.hpp:545
UNIMOD_Arg__Pro
Arg-&gt;Pro: Arg-&gt;Pro substitution.
Definition: cv.hpp:7757
MS_Shimadzu_Biotech_software
Shimadzu Biotech software:
Definition: cv.hpp:4904
MS_AXIMA_CFR_plus
AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.
Definition: cv.hpp:2327
MS_linear
linear: The mass scan is done in linear mode.
Definition: cv.hpp:431
MS_ProteinExtractor_MascotUseIdentityScore
ProteinExtractor:MascotUseIdentityScore:
Definition: cv.hpp:4532
MS_TSQ_Quantum_Access
TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.
Definition: cv.hpp:2444
MS_mass_analyzed_ion_kinetic_energy_spectrometry
mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrome...
Definition: cv.hpp:1139
MS_journal_article_keyword
journal article keyword: Keyword present in a scientific publication.
Definition: cv.hpp:6023
MS_database_sequence_details
database sequence details: Details about a single database sequence.
Definition: cv.hpp:4268
MS_transition_validation_attribute
transition validation attribute: Attributes of the quality of a transition that affect its selection ...
Definition: cv.hpp:5894
UNIMOD_Thr__Lys
Thr-&gt;Lys: Thr-&gt;Lys substitution.
Definition: cv.hpp:7823
MS_predicted_retention_time
predicted retention time: A time interval relative to the beginning of a mass spectrometric run when ...
Definition: cv.hpp:3236
MS_CI
CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion...
Definition: cv.hpp:329
UNIMOD_Lys__Ser
Lys-&gt;Ser: Lys-&gt;Ser substitution.
Definition: cv.hpp:8762
MS_Shimadzu_Biotech_instrument_model
Shimadzu Biotech instrument model: Shimadzu Biotech instrument model.
Definition: cv.hpp:2306
MS_TOF_Total_Path_Length
TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer...
Definition: cv.hpp:158
UNIMOD_MolybdopterinGD
MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).
Definition: cv.hpp:7265
MS_precursor_ion_scan
precursor ion scan: The specific scan function or process that will record a precursor ion spectrum...
Definition: cv.hpp:449
MS_param__d_ion
param: d ion:
Definition: cv.hpp:4040
MS_laser
laser: Device that emits light (electromagnetic radiation) through a process called stimulated emissi...
Definition: cv.hpp:3056
MS_PTM_localization_score
PTM localization score: A score that assign confidence to the localization of an amino acid modificat...
Definition: cv.hpp:6158
MS_ProteinExtractor_MascotUniqueScore
ProteinExtractor:MascotUniqueScore:
Definition: cv.hpp:4529
MS_decreasing_m_z_scan
decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers...
Definition: cv.hpp:422
MS_experimental_condition__control_
experimental condition &#39;control&#39;: The experimental condition is &#39;control&#39; in contrast to &#39;case&#39;...
Definition: cv.hpp:5681
MS_residual_gas_analyzer
residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in ...
Definition: cv.hpp:1199
MS_taxonomy__scientific_name
taxonomy: scientific name: This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
Definition: cv.hpp:4637
MS_msmsEval_quality
msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.
Definition: cv.hpp:4316
MS_TRITON
TRITON: ThermoFinnigan TRITON MS.
Definition: cv.hpp:794
MS_Mascot_use_MudPIT_scoring_OBSOLETE
Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.
Definition: cv.hpp:5249
UO_nmole_disk
nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/con...
Definition: cv.hpp:10127
MS_q_value_for_peptides
q-value for peptides: Peptide identification confidence metric q-value.
Definition: cv.hpp:5852
MS_spectrum_sub_set_protein
spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein...
Definition: cv.hpp:5039
UNIMOD_NEIAA_2H_5_
NEIAA:2H(5): N-ethyl iodoacetamide-d5.
Definition: cv.hpp:6866
MS_Conversion_to_mzML
Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzData file format...
Definition: cv.hpp:2081
MS_fragment_mass_type_average
fragment mass type average: Mass type setting for fragment mass was average isotopic.
Definition: cv.hpp:4031
MS_TSQ_7000
TSQ 7000: ThermoFinnigan TSQ 7000 MS.
Definition: cv.hpp:2756
MS_command_line_parameters
command-line parameters: Parameters string passed to a command-line interface software application...
Definition: cv.hpp:5903
MS_MaxQuant
MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass sp...
Definition: cv.hpp:4985
MS_magnetic_deflection
magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to ...
Definition: cv.hpp:896
UNIMOD_Deamidated_18O_1_
Deamidated:18O(1): Deamidation in presence of O18.
Definition: cv.hpp:7121
MS______D_______D__
((?&lt;=D))|((?=D)):
Definition: cv.hpp:4244
UNIMOD_Glu__Gly
Glu-&gt;Gly: Glu-&gt;Gly substitution.
Definition: cv.hpp:7556
MS_WARP_LC
WARP-LC: Bruker WARP-LC software.
Definition: cv.hpp:2726
MS_low_intensity_threshold
low intensity threshold: Threshold below which some action is taken.
Definition: cv.hpp:2399
MS_standard
standard: Something, such as a practice or a product, that is widely recognized or employed...
Definition: cv.hpp:3239
MS_2_iodobenzoate
2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.
Definition: cv.hpp:6008
UNIMOD_Asn__Trp
Asn-&gt;Trp: Asn-&gt;Trp substitution.
Definition: cv.hpp:8843
MS_API_150EX_Prep
API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.
Definition: cv.hpp:632
UNIMOD_Galactosyl
Galactosyl: Galactosyl hydroxylysine.
Definition: cv.hpp:8192
MS_FD
FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface i...
Definition: cv.hpp:1079
UNIMOD_Methylmalonylation
Methylmalonylation: Methylmalonylation on Serine.
Definition: cv.hpp:8207
MS_Q_Tof_micro
Q-Tof micro: Waters Q-Tof micro MS.
Definition: cv.hpp:764
MS_full_spectrum
full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stag...
Definition: cv.hpp:2192
MS_photoionization
photoionization: The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
Definition: cv.hpp:1175
UNIMOD_Glycosyl
Glycosyl: Glycosyl-L-hydroxyproline.
Definition: cv.hpp:7220
UO_count_unit
count unit: A dimensionless unit which denotes a simple count of things.
Definition: cv.hpp:9860
MS_6510_Quadrupole_Time_of_Flight_LC_MS
6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid ch...
Definition: cv.hpp:2537
UNIMOD_DiLeu4plex117
DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.
Definition: cv.hpp:9257
UNIMOD_Arg__Val
Arg-&gt;Val: Arg-&gt;Val substitution.
Definition: cv.hpp:8927
MS______KR__
(?&lt;=[KR]):
Definition: cv.hpp:4259
MS_decoy_DB_from_SwissProt
decoy DB from SwissProt:
Definition: cv.hpp:4133
UO_absorbed_dose_unit
absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation t...
Definition: cv.hpp:9683
MS_Agilent_MassHunter_nativeID_format
Agilent MassHunter nativeID format: scanId=xsd:nonNegativeInteger.
Definition: cv.hpp:4763
MS_parent_mass_type_average
parent mass type average: Mass type setting for parent mass was average isotopic. ...
Definition: cv.hpp:3905
MS_SIC_chromatogram
SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of th...
Definition: cv.hpp:2393
MS_MyriMatch_MVH
MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into severa...
Definition: cv.hpp:5003
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr paramete...
Definition: cv.hpp:5369
MS_NoEnzyme_OBSOLETE
NoEnzyme:
Definition: cv.hpp:3572
UNIMOD_Arg__Orn
Arg-&gt;Orn: Ornithine from Arginine.
Definition: cv.hpp:7133
MS_LTQ_Velos_ETD
LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.
Definition: cv.hpp:3104
UNIMOD_Cysteinyl
Cysteinyl: Cysteinylation.
Definition: cv.hpp:7010
UNIMOD_SPITC_13C_6_
SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).
Definition: cv.hpp:7355
UNIMOD_MM_diphenylpentanone
MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.
Definition: cv.hpp:9242
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Method
ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more...
Definition: cv.hpp:5342
MS_LTQ_Orbitrap_Discovery
LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.
Definition: cv.hpp:2114
MS_peak_picking
peak picking: Spectral peak processing conducted on the acquired data to convert profile data to cent...
Definition: cv.hpp:200
MS_ProteomeDiscoverer_4__Dynamic_Modification
ProteomeDiscoverer:4. Dynamic Modification: Determine 4th dynamic post-translational modifications (P...
Definition: cv.hpp:5417
MS_spectra_data_details
spectra data details: Child-terms contain information to map the results back to spectra.
Definition: cv.hpp:4826
MS_ProteomeDiscoverer_Number_of_input5_spectra
ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.
Definition: cv.hpp:5444
MS_solid_state_laser
solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host w...
Definition: cv.hpp:3089
MS_MD5
MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used...
Definition: cv.hpp:2153
MS_intermediate_analysis_format
intermediate analysis format: Type of the source file, the mzIdentML was created from.
Definition: cv.hpp:3449
MS______HKR_P____P_
(?&lt;=[HKR]P)(?!P):
Definition: cv.hpp:6128
UNIMOD_QAT
QAT: APTA-d0.
Definition: cv.hpp:6830
MS_low_energy_collision_induced_dissociation
low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precu...
Definition: cv.hpp:1715
UO_force_unit
force unit: A unit which is a standard measure of the force is applied when a mass is accelerated...
Definition: cv.hpp:9620
UNIMOD_Biotin_Sigma_B1267
Biotin:Sigma-B1267: Was Biotin-maleimide.
Definition: cv.hpp:8357
MS_pulse_energy
pulse energy: Describes output energy of the laser system. May be attenuated by filters or other mean...
Definition: cv.hpp:3074
UNIMOD_Cation_Li
Cation:Li: Replacement of proton by lithium.
Definition: cv.hpp:8276
UNIMOD_Biotin_Cayman_10013
Biotin:Cayman-10013: Was PGA1-biotin.
Definition: cv.hpp:7481
MS_Chymotrypsin
Chymotrypsin:
Definition: cv.hpp:4163
UO_century
century: A time unit which is equal to 100 years.
Definition: cv.hpp:9746
MS_AB_SCIEX_TOF_TOF_nativeID_format
AB SCIEX TOF/TOF nativeID format: jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:non...
Definition: cv.hpp:4679
MS_multiple_reaction_monitoring_spectrum
multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from s...
Definition: cv.hpp:2237
UO_cells_per_milliliter
cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 millil...
Definition: cv.hpp:9896
MS_peptide_unique_to_one_protein
peptide unique to one protein:
Definition: cv.hpp:4331
UNIMOD_2_monomethylsuccinyl
2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.
Definition: cv.hpp:9107
MS_Phenyx_Turbo_Coverage
Phenyx:Turbo:Coverage:
Definition: cv.hpp:4385
UNIMOD_Pyro_carbamidomethyl
Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).
Definition: cv.hpp:6509
UNIMOD_HNE_BAHAH
HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.
Definition: cv.hpp:8204
MS_electron_energy_obsolete
electron energy obsolete: The potential difference through which electrons are accelerated before the...
Definition: cv.hpp:866
UO_light_unit
light unit: A unit which is a standard measure of the intensity of light.
Definition: cv.hpp:9764
UNIMOD_DNPS
DNPS: 2,4-Dinitrobenzenesulfenyl.
Definition: cv.hpp:8252
MS_Q3_spectrum
Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage ...
Definition: cv.hpp:2198
MS_ProteomeDiscoverer_Protein_Database_OBSOLETE
ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server)...
Definition: cv.hpp:5231
UNIMOD_Lys__Ala
Lys-&gt;Ala: Lys-&gt;Ala substitution.
Definition: cv.hpp:8741
UO_katal_per_liter
katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a ca...
Definition: cv.hpp:9905
MS_API_3200
API 3200: AB SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.
Definition: cv.hpp:2471
UNIMOD_Hydroxyheme
Hydroxyheme: Hydroxyheme.
Definition: cv.hpp:7295
UNIMOD_NA_LNO2
NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.
Definition: cv.hpp:7895
MS_ProteinExtractor_ProteinSolverUniqueScore
ProteinExtractor:ProteinSolverUniqueScore:
Definition: cv.hpp:4556
MS_transition_validated_with_an_MS_MS_spectrum_on_specified_instrument
transition validated with an MS/MS spectrum on specified instrument: The transition has been validate...
Definition: cv.hpp:3281
UNIMOD_EDT_iodoacetyl_PEO_biotin
EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.
Definition: cv.hpp:6674
MS_chemical_ionization
chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion...
Definition: cv.hpp:326
UO_picoliter
picoliter: A volume unit which is equal to 10^[-12] L.
Definition: cv.hpp:9608
MS_Mascot_SigThreshold
Mascot:SigThreshold:
Definition: cv.hpp:4193
UNIMOD_Phe__Val
Phe-&gt;Val: Phe-&gt;Val substitution.
Definition: cv.hpp:7574
UO_colony_forming_unit_per_volume
colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a...
Definition: cv.hpp:9929
MS_orbitrap
orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner ...
Definition: cv.hpp:1892
MS_mass_scan
mass scan: A variation of instrument where a selected mass is scanned.
Definition: cv.hpp:416
MS_ProteomeDiscoverer_Precursor_Mass_Tolerance_OBSOLETE
ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to b...
Definition: cv.hpp:5225
MS_impact_angle
impact angle: Describes the angle between the laser beam and the sample target.
Definition: cv.hpp:3083
UNIMOD_Tyr__Thr
Tyr-&gt;Thr: Tyr-&gt;Thr substitution.
Definition: cv.hpp:9083
MS_spectral_count_protein_level_quantitation
spectral count protein level quantitation: Spectral count protein level quantitation.
Definition: cv.hpp:6323
MS_ProteinExtractor_ProteinSolverWeighting
ProteinExtractor:ProteinSolverWeighting:
Definition: cv.hpp:4559
UNIMOD_Gln__Arg
Gln-&gt;Arg: Gln-&gt;Arg substitution.
Definition: cv.hpp:7742
UNIMOD_Piperidine
Piperidine: Piperidination.
Definition: cv.hpp:7433
MS_fragment_ion_OBSOLETE
fragment ion: A product ion that results from the dissociation of a precursor ion.
Definition: cv.hpp:1505
UNIMOD_Ser__Thr
Ser-&gt;Thr: Ser-&gt;Thr substitution.
Definition: cv.hpp:7790
MS_ProteinScape_PFFSolverExp
ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.
Definition: cv.hpp:4748
UO_kilogram_per_cubic_meter
kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divide...
Definition: cv.hpp:9548
MS_double_focusing_mass_spectrometer
double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing a...
Definition: cv.hpp:1268
MS_activation_energy
activation energy: Activation Energy.
Definition: cv.hpp:1973
MS_PD
PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or n...
Definition: cv.hpp:593
MS_negative_scan
negative scan: Polarity of the scan is negative.
Definition: cv.hpp:566
UNIMOD_Ala__Asn
Ala-&gt;Asn: Ala-&gt;Asn substitution.
Definition: cv.hpp:8501
MS_decoy_DB_generation_algorithm
decoy DB generation algorithm: Name of algorithm used for decoy generation.
Definition: cv.hpp:4586
MS_printed_MALDI_matrix_preparation
printed MALDI matrix preparation: Printed MALDI matrix preparation.
Definition: cv.hpp:3047
MS_retention_time_s_
retention time(s): Retention time of the spectrum from the source file.
Definition: cv.hpp:3641
UNIMOD_His__Thr
His-&gt;Thr: His-&gt;Thr substitution.
Definition: cv.hpp:8714
MS_amaZon_ETD
amaZon ETD: Bruker Daltonics&#39; amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR.
Definition: cv.hpp:4865
MS_constant_neutral_loss_spectrum
constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a ...
Definition: cv.hpp:1385
MS_ProteomeDiscoverer_Use_Neutral_Loss_y_Ions
ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for ...
Definition: cv.hpp:5306
MS_4800_Proteomics_Analyzer
4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.
Definition: cv.hpp:2486
MS_median_of_spectra
median of spectra: Spectra is combined by calculating the median of the spectra.
Definition: cv.hpp:2168
MS_prolate_traochoidal_mass_spectrometer
prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are sep...
Definition: cv.hpp:1295
MS_Pro_BLAST
Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.
Definition: cv.hpp:2522
MS_Scaffold_nativeID_format
Scaffold nativeID format: Scaffold native ID format.
Definition: cv.hpp:4919
UNIMOD_Glu__Ser
Glu-&gt;Ser: Glu-&gt;Ser substitution.
Definition: cv.hpp:8609
MS_MarkerView_Software
MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling...
Definition: cv.hpp:2504
UO_specific_volume_unit
specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (...
Definition: cv.hpp:9476
MS_MALDI_Synapt_G2_MS
MALDI Synapt G2 MS: Waters oa-ToF based.
Definition: cv.hpp:5564
MS_autoionization
autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy g...
Definition: cv.hpp:1565
MS_iRT_retention_time_normalization_standard
iRT retention time normalization standard: A de facto standard providing the retention times at which...
Definition: cv.hpp:6278
UO_picovolt
picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12...
Definition: cv.hpp:10046
MS_Element_2
Element 2: Thermo Scientific Element 2 HR-ICP-MS.
Definition: cv.hpp:2450
UO_nanomolar
nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9]...
Definition: cv.hpp:9494
UNIMOD_Pro__Glu
Pro-&gt;Glu: Pro-&gt;Glu substitution.
Definition: cv.hpp:8852
MS_PeptideAtlas_dataset_URI
PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.
Definition: cv.hpp:6371
UNIMOD_Label_13C_4_
Label:13C(4): 13C4 Methionine label.
Definition: cv.hpp:9140
MS_FDRScore
FDRScore: Quality measurement score.
Definition: cv.hpp:5870
MS_baseline
baseline: An attribute of resolution when recording the detector response in absence of the analyte...
Definition: cv.hpp:398
PWIZ_API_DECL bool cvIsA(CVID child, CVID parent)
returns true iff child IsA parent in the CV
MS_proportional
proportional: When resolution is proportional with respect to m/z.
Definition: cv.hpp:413
MS_TOPP_software
TOPP software: TOPP (The OpenMS proteomics pipeline) software.
Definition: cv.hpp:2765
MS_MaxQuant_MS_MS_count
MaxQuant:MS/MS count: The data type MS/MS count produced by MaxQuant.
Definition: cv.hpp:5960
MS_detector_type
detector type: Type of detector used in the mass spectrometer.
Definition: cv.hpp:173
UO_area_unit
area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface...
Definition: cv.hpp:9440
MS_DB_source_NCBI
DB source NCBI:
Definition: cv.hpp:4025
MS_HCD
HCD (high-energy collision-induced dissociation): A collision-induced dissociation process wherein th...
Definition: cv.hpp:1682
MS_DBImporter
DBImporter: Imports data to an OpenMS database.
Definition: cv.hpp:2774
MS_Waters_instrument_model
Waters instrument model: Waters Corporation instrument model.
Definition: cv.hpp:548
MS_ProteomeDiscoverer_Number_of_predicted_correct_proteins
ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein id...
Definition: cv.hpp:5447
MS_LECO_instrument_model
LECO instrument model: LECO instrument model.
Definition: cv.hpp:5648
MS_number_of_counts
number of counts: The number of counted events observed in one or a group of elements of a detector...
Definition: cv.hpp:572
MS_Quattro_micro_GC
Quattro micro GC: Waters quadrupole based.
Definition: cv.hpp:5615
UNIMOD_Lys__Asn
Lys-&gt;Asn: Lys-&gt;Asn substitution.
Definition: cv.hpp:7628
UNIMOD_Trimethyl
Trimethyl: Tri-Methylation.
Definition: cv.hpp:6536
MS_electron_capture_dissociation
electron capture dissociation: A process in which a multiply protonated molecules interacts with a lo...
Definition: cv.hpp:1034
UNIMOD_Leu__MetOx
Leu-&gt;MetOx: Leu-&gt;Met substitution and sulfoxidation.
Definition: cv.hpp:8186
UNIMOD_Thr__Tyr
Thr-&gt;Tyr: Thr-&gt;Tyr substitution.
Definition: cv.hpp:8984
MS_PMT
PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are ...
Definition: cv.hpp:512
MS_collision_activated_dissociation
collision activated dissociation (collision-induced dissociation): The dissociation of an ion after c...
Definition: cv.hpp:587
MS_pmf_search
pmf search: A peptide mass fingerprint search.
Definition: cv.hpp:3542
UNIMOD_Acetylhypusine
Acetylhypusine: Acetylhypusine.
Definition: cv.hpp:8480
UNIMOD_Xle__Met
Xle-&gt;Met: Leu/Ile-&gt;Met substitution.
Definition: cv.hpp:7667
MS_apex_Q
apex Q: Bruker Daltonics&#39; apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition: cv.hpp:626
MS_structural_formula
structural formula: A chemical formula showing the number of atoms of each element in a molecule...
Definition: cv.hpp:3143
MS_HCTultra_ETD_II
HCTultra ETD II: Bruker Daltonics&#39; HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD.
Definition: cv.hpp:2609
MS_percent_collision_energy
percent collision energy: Collision energy required to fragment an ion represented as a percent value...
Definition: cv.hpp:614
UO_microliter_per_kilogram
microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogr...
Definition: cv.hpp:9890
UNIMOD_MG_H1
MG-H1: Methylglyoxal-derived hydroimidazolone.
Definition: cv.hpp:8102
MS_analyzer
analyzer (mass analyzer): Terms used to describe the Analyzer.
Definition: cv.hpp:1781
MS_inclusive_high_intensity_threshold
inclusive high intensity threshold: Threshold at or above which some action is taken.
Definition: cv.hpp:2891
UNIMOD_CHDH
CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.
Definition: cv.hpp:7289
MS_QSTAR_Pulsar
QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.
Definition: cv.hpp:2480
MS_OBSOLETE_charge_number_OBSOLETE
OBSOLETE charge number: OBSOLETE. The total charge on an ion divided by the electron charge e...
Definition: cv.hpp:848
MS_6110_Quadrupole_LC_MS
6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1841
MS_ProteomeDiscoverer_Lowest_Charge_State
ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out...
Definition: cv.hpp:5171
MS_IT
IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in c...
Definition: cv.hpp:1121
MS_PepsinA
PepsinA:
Definition: cv.hpp:4178